BAC Information

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BAC

Clone NameB6Ng01-229D14
Chromosome13 (Build37)
Map Location 98,918,117 - 99,134,197
singlet/doubletdoublet
Overlap geneRgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1
Upstream geneGfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
Downstream geneLOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229D14.bB6Ng01-229D14.g
ACCGA042433GA042434
length1,2021,030
definitionB6Ng01-229D14.b B6Ng01-229D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,132,983 - 99,134,197)(98,918,117 - 98,919,138)
sequence
gaattctttaatttgtttcttatatttaaagggatttgcaatacagcagg
tgctccttaaacagtgcagcctaatcctacttttcaaagctcaggggtta
aagagatgatcattagatgaactagttgagggaagaaacagagcgagagg
ctagaagagcgtgtttaaaacattatccatttgtttattttagaaaaggt
gagaaagttatcagtccaaatactcatctgactgcagtaaaggcaaacca
tcatctcttttatcttcattatttctagaaaggactgagtaataaccgat
tttatacagagacaggttttttttttaagaaaaaaaaaaggtaagtgttt
agacatttataattcagggatttagttttctcatcccgtagtttggagat
ttttcttctcctttcttttattcctgaatgaataagatgtaggaagaagt
cacacagagatcatgattctctatgttaatgtgttttatattttccagaa
cattttcatataaactgttttattgttacatgcatcttctgagaaaagaa
aaagaagaaaaacatgagaaaagaggaagaaagaaagctacccaggagag
tggaaactgacctaacggttaatttcaatgtagcctttgttctatggctt
tagagaatgtttggatgatggtcaccacccttccacgtcatcagttattt
aacaatgtaatcttgcagccatttccatgcactcaaaactcaataggagt
aaggaaaagtagaatggagtagtttccattcacaaaagtcttttcctaca
gacttttcccaagatgtgttgttattttgattattgaaaacattttctta
tttcttttaaacaggaattgttagctaagtgtgcaaagtaagaattcatc
tgtgtcctcccctctttgtttgccaatctgtgattgatcaagttaccagt
agagccagctagtggttctgtcctggcttctctcttggagcatgggacct
cagcaaagcatctcttcctctgacactgctctctccgagtcagctgggac
ctgcttgtattgctaacaccagaacagttcaaccggtaagttccaccacg
cttatcactaaggatctgcctactgcaaatatcattggatataagtgcaa
aatctctatccggttcctaatttcagtttcaaatattcccaattgttgca
aa
gaattcaacttcgaaagctaaatttctgtgcagaagcactgaccctgcct
ctcttcctgtctgctgtgcactaggacagcagcagttcttcttgccatgt
tcacagttggaccgtatgtaatcccataccaaaagtgaaggcgaaactag
atttctatttaacatcaaaataaatatattattgtagcagtgcagtgatt
taaatagcagatacaataaataaaaaaaaactgaaacacatttcttcatg
aggaaaactatctcagagccatatgttaaataaataaaatggggtgaaaa
aaccaaggaacagattgaacaggttgtagttatgtattcaacacacacac
acacacataacttctatgtttgtcatataaattatggcaaccctgtttgt
cattcctggttcccatagtgattatctgtaaacacaaggacctctgtgcc
tctcacagaatacgttttaaaatatgtttaaaatacatatataccaaaag
aaccatagaaggtacattctgaagtggaaattacttcacatatatatata
taattaacacacacatacacatatatatttatatatatatggaagaaagg
ccataaatttgagagcaaggaggggtatatggtaaagtttaggagagagg
aagaagatcgagacaatgatgtaattataatctcaaaaagtaaaagaaaa
aaaaattttaaaacaatagcttttcataactcagcttatatttgctagaa
tttttttgtttggttatttgtttctaaacagggatcaaattcaaggtttt
gggcatttgtatgcaagcactctgacactgaactatagtctcagtctttg
ggtgtttttgagacaagagtcttagttataagctcagactggccctgaat
taataccctttcacttctgcctaagaagctttggagtgcagcgtacagca
cagcattctggctggatttttgttctgctaataagtataagttgtcccaa
gggaaaatggaaagagatagagtagtttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_99132983_99134197
seq2: B6Ng01-229D14.b_47_1248 (reverse)

seq1  TTTG-AACAATTTGGAAAGTTTGAACATGAAATTAGGAAACAGGATAGAA  49
      |||| ||||||| ||||  ||||||  |||||||||| ||| ||||    
seq2  TTTGCAACAATTGGGAATATTTGAAACTGAAATTAGG-AACCGGAT----  45

seq1  AGATATTTTCCACTCTTAT-CAATGATATTTTTCAAGGTAGGGCATTTCC  98
      ||| ||||| ||||  ||| |||||||| ||| ||  ||| ||||  |||
seq2  AGAGATTTTGCACTTATATCCAATGATA-TTTGCA--GTA-GGCAGATCC  91

seq1  TT-GTGTGTAGCGTGTTGGAAC-TACGCGTGGAACTGTTCTGGTTGGTTA  146
      || |||   |||||| |||||| |||  || |||||||||||||  ||| 
seq2  TTAGTGATAAGCGTGGTGGAACTTACCGGTTGAACTGTTCTGGT--GTT-  138

seq1  AGCCAAATACAAGCCAGGCCCAGCTGACTCGGAGAGAAGCAGTG-CAGAG  195
      |||  |||||||||  | |||||||||||||||||| ||||||| |||||
seq2  AGC--AATACAAGCAGGTCCCAGCTGACTCGGAGAG-AGCAGTGTCAGAG  185

seq1  GAAGAGAATGCTTTGCCTGA-GTCCCATTGCTCC-AGAGAG-AGCCAGGA  242
      |||||| |||||||| |||| |||||| |||||| |||||| ||||||||
seq2  GAAGAG-ATGCTTTG-CTGAGGTCCCA-TGCTCCAAGAGAGAAGCCAGGA  232

seq1  CAG-ACCACTAGCTGGCTCTTACTTGTAACTTGATCAATCACAGATTGGC  291
      ||| ||||||||||||||| |||| |||||||||||||||||||||||||
seq2  CAGAACCACTAGCTGGCTC-TACTGGTAACTTGATCAATCACAGATTGGC  281

seq1  AAACAAAAAGAGGGGAGGACACAGATGAATTCCTACTTTGCACACTTAGC  341
      ||||  |||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAC--AAAGAGGGGAGGACACAGATGAATTCTTACTTTGCACACTTAGC  329

seq1  TAACAATTCCTGTTTAAAAAGAAATAAGAAAATGTTTTCAATAATCAAAA  391
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAACAATTCCTGTTT-AAAAGAAATAAGAAAATGTTTTCAATAATCAAAA  378

seq1  TAACAACACATCTTGGGAAAAGTCTGTAGGAAAAGACTTTTGTGAATGGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACACATCTTGGGAAAAGTCTGTAGGAAAAGACTTTTGTGAATGGA  428

seq1  AACTACTCCATTCTACTTTTCCTTACTCCTATTGAGTTTTGAGTGCATGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTCCATTCTACTTTTCCTTACTCCTATTGAGTTTTGAGTGCATGG  478

seq1  AAATGGCTGCAAGATTACATTGTTAAATAACTGATGACGTGGAAGGGTGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTGCAAGATTACATTGTTAAATAACTGATGACGTGGAAGGGTGG  528

seq1  TGACCATCATCCAAACATTCTCTAAAGCCATAGAACAAAGGCTACATTGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATCATCCAAACATTCTCTAAAGCCATAGAACAAAGGCTACATTGA  578

seq1  AATTAACCGTTAGGTCAGTTTCCACTCTCCTGGGTAGCTTTCTTTCTTCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACCGTTAGGTCAGTTTCCACTCTCCTGGGTAGCTTTCTTTCTTCC  628

seq1  TCTTTTCTCATGTTTTTCTTCTTTTTCTTTTCTCAGAAGATGCATGTAAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCATGTTTTTCTTCTTTTTCTTTTCTCAGAAGATGCATGTAAC  678

seq1  AATAAAACAGTTTATATGAAAATGTTCTGGAAAATATAAAACACATTAAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAGTTTATATGAAAATGTTCTGGAAAATATAAAACACATTAAC  728

seq1  ATAGAGAATCATGATCTCTGTGTGACTTCTTCCTACATCTTATTCATTCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAATCATGATCTCTGTGTGACTTCTTCCTACATCTTATTCATTCA  778

seq1  GGAATAAAAGAAAGGAGAAGAAAAATCTCCAAACTACGGGATGAGAAAAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAAAGAAAGGAGAAGAAAAATCTCCAAACTACGGGATGAGAAAAC  828

seq1  TAAATCCCTGAATTATAAATGTCTAAACACTTACCTTTTTTTTTTCTTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCCTGAATTATAAATGTCTAAACACTTACCTTTTTTTTTTCTTAA  878

seq1  AAAAAAAACCTGTCTCTGTATAAAATCGGTTATTACTCAGTCCTTTCTAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCTGTCTCTGTATAAAATCGGTTATTACTCAGTCCTTTCTAG  928

seq1  AAATAATGAAGATAAAAGAGATGATGGTTTGCCTTTACTGCAGTCAGATG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGAAGATAAAAGAGATGATGGTTTGCCTTTACTGCAGTCAGATG  978

seq1  AGTATTTGGACTGATAACTTTCTCACCTTTTCTAAAATAAACAAATGGAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGGACTGATAACTTTCTCACCTTTTCTAAAATAAACAAATGGAT  1028

seq1  AATGTTTTAAACACGCTCTTCTAGCCTCTCGCTCTGTTTCTTCCCTCAAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTAAACACGCTCTTCTAGCCTCTCGCTCTGTTTCTTCCCTCAAC  1078

seq1  TAGTTCATCTAATGATCATCTCTTTAACCCCTGAGCTTTGAAAAGTAGGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATCTAATGATCATCTCTTTAACCCCTGAGCTTTGAAAAGTAGGA  1128

seq1  TTAGGCTGCACTGTTTAAGGAGCACCTGCTGTATTGCAAATCCCTTTAAA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTGCACTGTTTAAGGAGCACCTGCTGTATTGCAAATCCCTTTAAA  1178

seq1  TATAAGAAACAAATTAAAGAATTC  1215
      ||||||||||||||||||||||||
seq2  TATAAGAAACAAATTAAAGAATTC  1202

seq1: chr13_98918117_98919138
seq2: B6Ng01-229D14.g_68_1097

seq1  GAATTCAACTTCGAAAGCTAAATTTCTGTGCAGAAGCACTGACCCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTCGAAAGCTAAATTTCTGTGCAGAAGCACTGACCCTGCCT  50

seq1  CTCTTCCTGTCTGCTGTGCACTAGGACAGCAGCAGTTCTTCTTGCCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTGTCTGCTGTGCACTAGGACAGCAGCAGTTCTTCTTGCCATGT  100

seq1  TCACAGTTGGACCGTATGTAATCCCATACCAAAAGTGAAGGCGAAACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTGGACCGTATGTAATCCCATACCAAAAGTGAAGGCGAAACTAG  150

seq1  ATTTCTATTTAACATCAAAATAAATATATTATTGTAGCAGTGCAGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTTAACATCAAAATAAATATATTATTGTAGCAGTGCAGTGATT  200

seq1  TAAATAGCAGATACAATAAATAAAAAAAAACTGAAACACATTTCTTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCAGATACAATAAATAAAAAAAAACTGAAACACATTTCTTCATG  250

seq1  AGGAAAACTATCTCAGAGCCATATGTTAAATAAATAAAATGGGGTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACTATCTCAGAGCCATATGTTAAATAAATAAAATGGGGTGAAAA  300

seq1  AACCAAGGAACAGATTGAACAGGTTGTAGTTATGTATTCAACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGAACAGATTGAACAGGTTGTAGTTATGTATTCAACACACACAC  350

seq1  ACACACATAACTTCTATGTTTGTCATATAAATTATGGCAACCCTGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATAACTTCTATGTTTGTCATATAAATTATGGCAACCCTGTTTGT  400

seq1  CATTCCTGGTTCCCATAGTGATTATCTGTAAACACAAGGACCTCTGTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGGTTCCCATAGTGATTATCTGTAAACACAAGGACCTCTGTGCC  450

seq1  TCTCACAGAATACGTTTTAAAATATGTTTAAAATACATATATACCAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGAATACGTTTTAAAATATGTTTAAAATACATATATACCAAAAG  500

seq1  AACCATAGAAGGTACATTCTGAAGTGGAAATTACTTCACATATATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAGAAGGTACATTCTGAAGTGGAAATTACTTCACATATATATATA  550

seq1  TAATTAACACACACATACACATATATATTTATATATATATGGAAGAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACACACACATACACATATATATTTATATATATATGGAAGAAAGG  600

seq1  CCATAAATTTGAGAGCAAGGAGGGGTATATGGTAAAGTTTAGGAGAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATTTGAGAGCAAGGAGGGGTATATGGTAAAGTTTAGGAGAGAGG  650

seq1  AAGAAGATCGAGACAATGATGTAATTATAATCTCAAAAAGTAAAAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATCGAGACAATGATGTAATTATAATCTCAAAAAGTAAAAGAAAA  700

seq1  AAAAATTTTAAAACAATAGCTTTTCATAACTCAGCTTATATTTGCTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTAAAACAATAGCTTTTCATAACTCAGCTTATATTTGCTAGAA  750

seq1  TTTTTTTGTTTGGTTATTTGTTTCTAAACAGGGATCAAATTCAAGGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTGGTTATTTGTTTCTAAACAGGGATCAAATTCAAGGTTTT  800

seq1  GGGCA-TTGTATGCAAGCACTCTGACACTGAACTATAGTCTCAGTCTTT-  848
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGCATTTGTATGCAAGCACTCTGACACTGAACTATAGTCTCAGTCTTTG  850

seq1  GGTG-TTTTGAGACAAGAGTCTTAGTTATAAGCTCAGACTGGCCCTGAAT  897
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTTGAGACAAGAGTCTTAGTTATAAGCTCAGACTGGCCCTGAAT  900

seq1  TAATA-CCTTTCAC-TCTGCCTAAG-AGCTTT-GAGTGCAGGCGTACAGC  943
      ||||| |||||||| |||||||||| |||||| ||||||| |||||||||
seq2  TAATACCCTTTCACTTCTGCCTAAGAAGCTTTGGAGTGCA-GCGTACAGC  949

seq1  ACAGCA-TCTGGCTGGATTTT--GTCTGCTAATAAAGTATAAG-TGGCCC  989
      |||||| ||||||||||||||   ||||||||| ||||||||| || |||
seq2  ACAGCATTCTGGCTGGATTTTTGTTCTGCTAAT-AAGTATAAGTTGTCCC  998

seq1  AAGGG-AAATGGAAAGAGATAAGAGTAGGTTTGG  1022
      ||||| |||||||||||||| |||||| ||||||
seq2  AAGGGAAAATGGAAAGAGAT-AGAGTA-GTTTGG  1030