BAC Information

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BAC

Clone NameB6Ng01-230O10
Chromosome13 (Build37)
Map Location 63,770,521 - 63,917,434
singlet/doubletdoublet
Overlap geneC030010C08Rik, 0610007P08Rik
Upstream geneLOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
Downstream gene9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230O10.bB6Ng01-230O10.g
ACCGA043643GA043644
length5171,130
definitionB6Ng01-230O10.b B6Ng01-230O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,770,521 - 63,771,377)(63,916,333 - 63,917,434)
sequence
ttctagtcctgtcttcctctcacacccatctttctgcccttgatcccagg
gattctgcctgctggggcagccagccagctactgtgatggcaatggcctc
ccaccgagctgagggattgccaccagcccacaattatgctggattttgga
agcctctgtgtggcaaggagcaaggtcctgtgttcccaggtattattaac
tcaggttgaagcctgaggagcttgcacactctagattttaaaacacatgc
ctttttcgttagactatttagcataaatatgtcctaagtaggggctaagg
agctgttccatcaggccctactttgccccatagaacagggtgccacaacg
tttccaatgtggagagagtgtaagttgtggctgctctcaatttcaaaggt
agctcagttgctggatgtggggggtggggggaatactaacgaataacctt
ctattttctaagaagcatcttggggatgtgtgcttttataaaaaagcgat
gtttcagaaaccttttc
gaattcataaggagaactgactcacccaagctatcctctgactttcacat
gcctgatgcacacatatacacaaagtttgtaatctgttatatcaatcaat
tttattaataaaagctagagggcaagtctgcatccctgatggcttgtgag
ataactgcactttcaaaagctcttggtgatctactagaggcaaaattctg
cttcaatacgccatgtaagtgaactaaactaaataaataggcctttgatc
atctacctaacagatccctgctattgactaataactggcatatacaaaga
caaaaatgacatttactgaacgccaagggtcaaaagtggagtcacttgca
tctcatctcatctaatagtcacaagaagcaatagtcctcgttttacagat
gaggagtctgttcccactgctcggcgagtaactgtgagggacagcactaa
attctttcgtccaggcggctgagtcgcaaagccgaggacttcccgcgggg
caagagttcgaaacccgcagctgtcaatcacaggaagcacgcgggagccg
cttccggaagtgccctgaagacgtgtgcctgcgcagaggcgcgagctcgg
agctcatacctttgcgggagtctgcgcgggactgcggggcggagatgtcc
atcgggctaggggcaggcacccggcagccccgccgctctcggcggcgagg
agagcacggcacgtgggccggctgccgggcatcgcccgcccggagcgggg
ggcgctatgtggggcctgacgcggcggcgtcacctcagcgaccagccaac
gctcgccagagcccgtaaatcccgcgagaacgagcgcctctgcgcttcca
tcgctcgcctcccttccagattatcgcgagaaggaatgggactagccttt
cagcgggcggaagcggctttctcttccagacgaggtcagcctcgcgcagt
tcgcgaacgtcccaaatattcgcgagattgggcattagttcggcgaacct
cgacccttctttcgcttgaagaagttccacgaccttgaggtgttgtgaca
cttcctcccagggcggaaaaaagacggtgtgagccctgccaacagaactc
aattgacaccgtgtggtgggccttgatcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63770521_63771377
seq2: B6Ng01-230O10.b_48_570

seq1  GAATTCTTCTAGTCCTGTCTTCCTCTCACACCCATCTTTCTGCCCTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAGTCCTGTCTTCCTCTCACACCCATCTTTCTGCCCTTGAT  50

seq1  CCCAGGGATTCTGCCTGCTGGGGCAGCCAGCCAGCTACTGTGATGGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGATTCTGCCTGCTGGGGCAGCCAGCCAGCTACTGTGATGGCAAT  100

seq1  GGCCTCCCACCGAGCTGAGGGATTGCCACCAGCCCACAATTATGCTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCCACCGAGCTGAGGGATTGCCACCAGCCCACAATTATGCTGGAT  150

seq1  TTTGGAAGCCTCTGTGTGGCAAGGAGCAAGGTCCTGTGTTCCCAGGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGCCTCTGTGTGGCAAGGAGCAAGGTCCTGTGTTCCCAGGTATT  200

seq1  ATTAACTCAGGTTGAAGCCTGAGGAGCTTGCACACTCTAGATTTTAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCAGGTTGAAGCCTGAGGAGCTTGCACACTCTAGATTTTAAAAC  250

seq1  ACATGCCTTTTTCGTTAGACTATTTAGCATAAATATGTCCTAAGTAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTTTTTCGTTAGACTATTTAGCATAAATATGTCCTAAGTAGGGG  300

seq1  CTAAGGAGCTGTTCCATCAGGCCCTACTTTGCCCCATAGAACAGGGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAGCTGTTCCATCAGGCCCTACTTTGCCCCATAGAACAGGGTGCC  350

seq1  ACAACGTTTCCAATGTGGAGAGAGTGTAAGTTGTGGCTGCTCTCAATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTTTCCAATGTGGAGAGAGTGTAAGTTGTGGCTGCTCTCAATTTC  400

seq1  AAAGGTAGCTCAGTTGCTGGATGTGGGGGGTGGGGGGAATACAAACGAAT  450
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAGGTAGCTCAGTTGCTGGATGTGGGGGGTGGGGGGAATACTAACGAAT  450

seq1  AACCTTCTA-TTTCTAAGAAGCAGCTTGGGGATGTGTGC-TTTAT-AAAA  497
      ||||||||| ||||||||||||| ||||||||||||||| ||||| ||||
seq2  AACCTTCTATTTTCTAAGAAGCATCTTGGGGATGTGTGCTTTTATAAAAA  500

seq1  AGCGATGTTTCAGAAAC--TTTCCTAAAAGCCATGTGCACAGTATGTGTT  545
      |||||||||||||||||  ||||                           
seq2  AGCGATGTTTCAGAAACCTTTTC---------------------------  523

seq1  GAAGTTCCAACTGTGGCTTAGGGCTTCCTCAGTATCCCCTCTACTTGACA  595
                                                        
seq2  --------------------------------------------------  523

seq1  GGCACACACAGGCCAGCTGTGTCCTTAGCATACATAAATGCATTCCTTTC  645
                                                        
seq2  --------------------------------------------------  523

seq1  TTTCCTTTTAATGAAATAAGTATTGTTTTCTAACCATCTGAAGTGATTGA  695
                                                        
seq2  --------------------------------------------------  523

seq1  TGTCTTTTTTTTCCCTAGTAGAGTGTCCCAAGCACTATGTGTTTACAGCT  745
                                                        
seq2  --------------------------------------------------  523

seq1  TCCCTGATGTCTTGATCTTTTTCATAGCAAGCTTCCTGAAGAAACAACCT  795
                                                        
seq2  --------------------------------------------------  523

seq1  CTGGCTTCGTTATCTTTGATATCTTTGTATTACAAAGAAAATCTAGATTA  845
                                                        
seq2  --------------------------------------------------  523

seq1  TTATTTCTTTTC  857
                  
seq2  ------------  523

seq1: chr13_63916333_63917434
seq2: B6Ng01-230O10.g_71_1200 (reverse)

seq1  ACGA-CAAGG-CCACCACA--GTGTCAAT---GGTCTGT--GCAGGGCTC  41
      |||| ||||| ||||||||  ||||||||   | |||||  |||||||||
seq2  ACGATCAAGGCCCACCACACGGTGTCAATTGAGTTCTGTTGGCAGGGCTC  50

seq1  ACACTGTC-TTTTTCCGCCCTGGGAGGA--TGTCAC-ACACCTC-AGGTC  86
      |||| ||| |||||||||||||||||||  |||||| ||||||| |||||
seq2  ACACCGTCTTTTTTCCGCCCTGGGAGGAAGTGTCACAACACCTCAAGGTC  100

seq1  GTGG-ACTCCCTC-AGCGAA--GAGGGTCGAGG-TCGCCG-ACTAATGCC  130
      |||| ||| | || ||||||   |||||||||| |||||| |||||||||
seq2  GTGGAACTTCTTCAAGCGAAAGAAGGGTCGAGGTTCGCCGAACTAATGCC  150

seq1  AAATCTCGCG-ATATTTGGGACGTTCGCGAACTGCGCGAGGCTGACCTCG  179
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCGCGAATATTTGGGACGTTCGCGAACTGCGCGAGGCTGACCTCG  200

seq1  TCTGGAAG-GGAAGCCGCTTCCGCCCGCTGAAAGGCTAGT-CCAT--CTT  225
      |||||||| | ||||||||||||||||||||||||||||| ||||  |||
seq2  TCTGGAAGAGAAAGCCGCTTCCGCCCGCTGAAAGGCTAGTCCCATTCCTT  250

seq1  CTCGCGAT-ATCTGG-AGGGAGGCGAGCGATGG-AGCGCAGAGGCGCTCG  272
      |||||||| |||||| ||||||||||||||||| ||||||||||||||||
seq2  CTCGCGATAATCTGGAAGGGAGGCGAGCGATGGAAGCGCAGAGGCGCTCG  300

seq1  TTCTCGCGGGATTTACGGGCTCTGGCGAGCGTTGGCTGGTCGCTGAGGTG  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGCGGGATTTACGGGCTCTGGCGAGCGTTGGCTGGTCGCTGAGGTG  350

seq1  ACGCCGCCGCGTCAGGCCCCACATAGCGCCCCCCGCTCCGGGCGGGCGAT  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCGCCGCGTCAGGCCCCACATAGCGCCCCCCGCTCCGGGCGGGCGAT  400

seq1  GCCCGGCAGCCGGCCCACGTGCCGTGCTCTCCTCGCCGCCGAGAGCGGCG  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGCAGCCGGCCCACGTGCCGTGCTCTCCTCGCCGCCGAGAGCGGCG  450

seq1  GGGCTGCCGGGTGCCTGCCCCTAGCCCGATGGACATCTCCGCCCCGCAGT  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCGGGTGCCTGCCCCTAGCCCGATGGACATCTCCGCCCCGCAGT  500

seq1  CCCGCGCAGACTCCCGCAAAGGTATGAGCTCCGAGCTCGCGCCTCTGCGC  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCGCAGACTCCCGCAAAGGTATGAGCTCCGAGCTCGCGCCTCTGCGC  550

seq1  AGGCACACGTCTTCAGGGCACTTCCGGAAGCGGCTCCCGCGTGCTTCCTG  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACGTCTTCAGGGCACTTCCGGAAGCGGCTCCCGCGTGCTTCCTG  600

seq1  TGATTGACAGCTGCGGGTTTCGAACTCTTGCCCCGCGGGAAGTCCTCGGC  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACAGCTGCGGGTTTCGAACTCTTGCCCCGCGGGAAGTCCTCGGC  650

seq1  TTTGCGACTCAGCCGCCTGGACGAAAGAATTTAGTGCTGTCCCTCACAGT  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGACTCAGCCGCCTGGACGAAAGAATTTAGTGCTGTCCCTCACAGT  700

seq1  TACTCGCCGAGCAGTGGGAACAGACTCCTCATCTGTAAAACGAGGACTAT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCGCCGAGCAGTGGGAACAGACTCCTCATCTGTAAAACGAGGACTAT  750

seq1  TGCTTCTTGTGACTATTAGATGAGATGAGATGCAAGTGACTCCACTTTTG  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTGTGACTATTAGATGAGATGAGATGCAAGTGACTCCACTTTTG  800

seq1  ACCCTTGGCGTTCAGTAAATGTCATTTTTGTCTTTGTATATGCCAGTTAT  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGCGTTCAGTAAATGTCATTTTTGTCTTTGTATATGCCAGTTAT  850

seq1  TAGTCAATAGCAGGGATCTGTTAGGTAGATGATCAAAGGCCTATTTATTT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATAGCAGGGATCTGTTAGGTAGATGATCAAAGGCCTATTTATTT  900

seq1  AGTTTAGTTCACTTACATGGCGTATTGAAGCAGAATTTTGCCTCTAGTAG  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGTTCACTTACATGGCGTATTGAAGCAGAATTTTGCCTCTAGTAG  950

seq1  ATCACCAAGAGCTTTTGAAAGTGCAGTTATCTCACAAGCCATCAGGGATG  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAGAGCTTTTGAAAGTGCAGTTATCTCACAAGCCATCAGGGATG  1000

seq1  CAGACTTGCCCTCTAGCTTTTATTAATAAAATTGATTGATATAACAGATT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGCCCTCTAGCTTTTATTAATAAAATTGATTGATATAACAGATT  1050

seq1  ACAAACTTTGTGTATATGTGTGCATCAGGCATGTGAAAGTCAGAGGATAG  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTTGTGTATATGTGTGCATCAGGCATGTGAAAGTCAGAGGATAG  1100

seq1  CTTGGGTGAGTCAGTTCTCCTTATGAATTC  1102
      ||||||||||||||||||||||||||||||
seq2  CTTGGGTGAGTCAGTTCTCCTTATGAATTC  1130