BAC Information

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BAC

Clone NameB6Ng01-231H05
Chromosome13 (Build37)
Map Location 81,867,643 - 81,868,845
singlet/doubletsinglet
Overlap gene2900024O10Rik
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g
Downstream geneCetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231H05.bB6Ng01-231H05.g
ACCGA044051GA044052
length1,1991,184
definitionB6Ng01-231H05.b B6Ng01-231H05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagcaggtttcaggaaggaaacaaactgcatgtctgttcacctt
tttctggtacttgcagtttttgtttttaattttcataaatgacagtgtct
atctgaaactgctcctctcctgacataatttatcagggcaacattaggga
aactgtttatagaatgaggacaaagggaaaaatcacttgaacttgaacca
gcagaatactgtgaaaaatagacaaagtgatatgttctagttcaaaaggc
ctggactgtatctaaggtctactactttcatctgcagaaagttgctgttt
cactatagtacatgcattgttttccatcgaggtaatgcactcgaggagac
tgctaacctctttgaccttcaattagaggcagcttttaggttagagataa
cagtgtagatttatgctttgccttgacagcaaatcatctattcacttaat
gaaatgtagtgcctttgccttcgtgtcttctaaccaaagctattctatta
cagctgcataggagtgtgtgtgtgtgcagattgtaaatgaatttttaata
tctatctcttacatctccttccagacatctggactgggttacaattcact
tagcagcccacatcattcagaagacaggaaattaatcttccggagatgag
agagtagaggatgctggaaagcttgaggtgtccgtctcttaatgagaagc
cactttacacaacatggtcctgtcgctctcaaaacaaggctcaaagcacc
acataccagtaatttacaatgcttttccagctccaaaaatgtcaggattt
gccactgttgaggcccaatcctcttaacataactgaaggaagacattttg
tattcagtctccattttgctcataaaggtgaaattaagttcagttcttag
actccaattcccagaagtaattatctagagctgccactgaaaaatgtcac
taatagccaaaagttatgggttgaatccacttatgtctgttatctcaatg
tactgataagtcctgggcgctacctgtcaccaccccctctttcctcactc
agaccatctgctaaaagtcagctgaataatgctcttgtctagtagcatat
tccacctccacgcttgcctggtccaagtcgaactgggctttcctataaaa
gctggcctagaaatgttttgatgtcatgttcagaaccctaatttctgaa
gaattctcacccccagtgaataccaaatggcagagaagcacctgaaaaaa
tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
attccacctcacaccagtcagaatggctaagatcaaaaattcaggtgaca
gcagatgctggcgtggatgtggagaaagaggaacactcctccattgttag
tgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcct
cagaaaattggacatagtactaccggaggatccagcaatacctctcctgg
gcatatatccagaagatgccccaactggtaagaaggacacatgctccact
atgttcaaagcagccttatttataatagccagaagctggaaagaacctag
atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaa
tggagtactactcagctattaaaaagtgaatttataaaattcctatccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatataatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagggggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggccctagcaaa
cacagaagtggatgctcacagtcacctaatggaatggatcacagggctcc
caatggagagctagagaagtaccaagagctaaagggatctgcaacctaat
aggtgacacgttatgtactacccagtaccccagagctcttgactctagct
gcatatgtatcaaagatgcctagtccgcaatcactgtaaatagagcccat
ggtacggccaaattatatgcctcagtcacgaacgcaggctaacgggcatt
ggcgtgttaagcaagtcgctactatcctctcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81867643_81868845
seq2: B6Ng01-231H05.b_45_1243 (reverse)

seq1  TTCAG-AATTAGG--TCTGAAACTATGACATC-AAACATTTCTTAGAGCA  46
      ||||| |||||||  ||||||   |||||||| ||||||||| ||| || 
seq2  TTCAGAAATTAGGGTTCTGAA--CATGACATCAAAACATTTC-TAG-GCC  46

seq1  AACTTTTTATAGGAAAACCCAGGTTCCAAACTTTGAC--AGCAAGCCGTG  94
      | | |||||||||||| |||| ||||   |||| |||   ||||| ||||
seq2  AGC-TTTTATAGGAAAGCCCA-GTTC--GACTTGGACCAGGCAAG-CGTG  91

seq1  GA-GTG--ATATGCTTACTAGAC-AGAGCATTA-TCAGCTGACCTTTTAA  139
      || |||  |||||| |||||||| ||||||||| |||||||||  ||| |
seq2  GAGGTGGAATATGC-TACTAGACAAGAGCATTATTCAGCTGAC--TTTTA  138

seq1  GCAGATTGGTCCTGAGTGAGGAAAGA-GGGGTGGTGGACAGGTAGCGCCC  188
      ||||| |||| ||||||||||||||| |||||||| ||||||||||||||
seq2  GCAGA-TGGT-CTGAGTGAGGAAAGAGGGGGTGGT-GACAGGTAGCGCCC  185

seq1  AAGGGAC-TATCAGTACATTGAGATAACAGAACATAAGT-GATTCAA-CC  235
      |  |||| |||||||||||||||||||||| |||||||| ||||||| ||
seq2  A--GGACTTATCAGTACATTGAGATAACAG-ACATAAGTGGATTCAACCC  232

seq1  ATAACTTTTGGCTTATTAGTGACATTTTTCAGTGGCAGCTCTAGATAATT  285
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTTGGC-TATTAGTGACATTTTTCAGTGGCAGCTCTAGATAATT  281

seq1  ACTTCTGGGAATTGGAGTCTAAGAACCTGAACTTAATTTCACC-TTATGA  334
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  ACTTCTGGGAATTGGAGTCTAAGAA-CTGAACTTAATTTCACCTTTATGA  330

seq1  GCAAAATGGAGACTGAATACAAAATGTCTTCCTTCAGTTATGTTAAGAGG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATGGAGACTGAATACAAAATGTCTTCCTTCAGTTATGTTAAGAGG  380

seq1  ATTGGGCCTCAACAGTGGCAAATCCTGACATTTTTGGAGCTGGAAAAGCA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCCTCAACAGTGGCAAATCCTGACATTTTTGGAGCTGGAAAAGCA  430

seq1  TTGTAAATTACTGGTATGTGGTGCTTTGAGCCTTGTTTTGAGAGCGACAG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATTACTGGTATGTGGTGCTTTGAGCCTTGTTTTGAGAGCGACAG  480

seq1  GACCATGTTGTGTAAAGTGGCTTCTCATTAAGAGACGGACACCTCAAGCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGTTGTGTAAAGTGGCTTCTCATTAAGAGACGGACACCTCAAGCT  530

seq1  TTCCAGCATCCTCTACTCTCTCATCTCCGGAAGATTAATTTCCTGTCTTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCATCCTCTACTCTCTCATCTCCGGAAGATTAATTTCCTGTCTTC  580

seq1  TGAATGATGTGGGCTGCTAAGTGAATTGTAACCCAGTCCAGATGTCTGGA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATGTGGGCTGCTAAGTGAATTGTAACCCAGTCCAGATGTCTGGA  630

seq1  AGGAGATGTAAGAGATAGATATTAAAAATTCATTTACAATCTGCACACAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGTAAGAGATAGATATTAAAAATTCATTTACAATCTGCACACAC  680

seq1  ACACACTCCTATGCAGCTGTAATAGAATAGCTTTGGTTAGAAGACACGAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCCTATGCAGCTGTAATAGAATAGCTTTGGTTAGAAGACACGAA  730

seq1  GGCAAAGGCACTACATTTCATTAAGTGAATAGATGATTTGCTGTCAAGGC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGCACTACATTTCATTAAGTGAATAGATGATTTGCTGTCAAGGC  780

seq1  AAAGCATAAATCTACACTGTTATCTCTAACCTAAAAGCTGCCTCTAATTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAAATCTACACTGTTATCTCTAACCTAAAAGCTGCCTCTAATTG  830

seq1  AAGGTCAAAGAGGTTAGCAGTCTCCTCGAGTGCATTACCTCGATGGAAAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAAAGAGGTTAGCAGTCTCCTCGAGTGCATTACCTCGATGGAAAA  880

seq1  CAATGCATGTACTATAGTGAAACAGCAACTTTCTGCAGATGAAAGTAGTA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCATGTACTATAGTGAAACAGCAACTTTCTGCAGATGAAAGTAGTA  930

seq1  GACCTTAGATACAGTCCAGGCCTTTTGAACTAGAACATATCACTTTGTCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAGATACAGTCCAGGCCTTTTGAACTAGAACATATCACTTTGTCT  980

seq1  ATTTTTCACAGTATTCTGCTGGTTCAAGTTCAAGTGATTTTTCCCTTTGT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCACAGTATTCTGCTGGTTCAAGTTCAAGTGATTTTTCCCTTTGT  1030

seq1  CCTCATTCTATAAACAGTTTCCCTAATGTTGCCCTGATAAATTATGTCAG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCTATAAACAGTTTCCCTAATGTTGCCCTGATAAATTATGTCAG  1080

seq1  GAGAGGAGCAGTTTCAGATAGACACTGTCATTTATGAAAATTAAAAACAA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGCAGTTTCAGATAGACACTGTCATTTATGAAAATTAAAAACAA  1130

seq1  AAACTGCAAGTACCAGAAAAAGGTGAACAGACATGCAGTTTGTTTCCTTC  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCAAGTACCAGAAAAAGGTGAACAGACATGCAGTTTGTTTCCTTC  1180

seq1  CTGAAACCTGCTGGAATTC  1203
      |||||||||||||||||||
seq2  CTGAAACCTGCTGGAATTC  1199