BAC Information

Click to search

BAC

Clone NameB6Ng01-231J01
Chromosome13 (Build37)
Map Location 62,639,957 - 62,801,738
singlet/doubletdoublet
Overlap gene6720457D02Rik, LOC100041493, LOC630857, EG630978, EG435366
Upstream geneCtsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, EG665503
Downstream geneLOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231J01.bB6Ng01-231J01.g
ACCGA044132GA044133
length7941,184
definitionB6Ng01-231J01.b B6Ng01-231J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,801,201 - 62,801,738)(62,639,957 - 62,641,122)
sequence
gaattcatagtggagagaaaccctacaaatgtaatgaatgtgataaagta
tttagacaaagcagtgatctccaaaagcatagaaggacacacacaggaga
aaaaccctacaaatgtaatcagtgtgagaaagtcttctcccaacatcatc
atctccaaatccataaaagatcacatactggagagaaacccttcaaatgt
aatgaatgtgataaagccttttcacaacttggtaacctccagtcacatag
acgaattcatactggagagaaaccctacaaatgtaatacatgtgagaaag
ccttttcacaacatagtcatctccagtcacatagaagaattcatactgga
gagaaaccctacagatgtaataaatgtgagaaagccttttcacaacatag
taacctccagtcgcatagaagaattcataatggagagaaatcctttaaat
gtaataaatgtgagaaagcctttttacaacactatagcctccaaagacat
aaaagaatacatactggatagaaacacaatgaatgtgatctatgtgtgaa
agcctgtgtatgtcacaggcatcttcaaaagcataaaagaattcatactg
tagagaaagctttatgaatgtatacaatatgtaaaatctacaaatatcta
gtcttaatcatcatgaacatattgtattggcaagaaaccctctgaaatat
tatctgtgtggtaaaacgtatcccaacacacttatctcccaaatacatca
aggagcacatactgggggagacagaggtgggggggtttggggag
gaattcaaacgagtcagcgtgtggttctttaaaaaatgaaatttataaat
taatgccaaaaatggactttgggggaatatatataacgcacaagtatact
ggcactgcaggtcattccctggcagaggcaatggcattaataaaatactt
tttgatgttgtccctgtgtggactggtagttgctaagtcctgtaacctga
cacacacagctgcaactaatgaatggcctgtgtctcaaaaaatctgagct
gacttaaccatgtcaatgagcatcactcaaatccacataggacagtaccc
taactggaaattcagtattcacatgatcaccacataatacagtaccctaa
ctggaaattcagtattcattggaataacctaaatatttcaaattgtatag
tgtaaatatttcaaattgtacacccaccagtcttgtgtgtttatattaaa
atgtacaaattaacaaaggctaagaaatcacaaaatcacacaacctgtgc
aactcaggtccttcttcatattggtgagccctgtagctgagtgccttaaa
cttgacttagtctgagatctagctattgcctactctgttttactctgcac
tgtacaaaggacattgctcctcctgttctgttctgagggcagaaacaatg
cttcatgcaaatcctttccctgttactgcaaagcacagttcattcacgga
gccaaatgggtaacattaaaactctgttgtgctactaccctttaacttaa
gaatacagaaactttaatcaagaggaaagcaaggtcattgccctgggaaa
caacagactgggatcagggccctgtaaagcaatatacctcttgtcaggaa
aaatgtgccagaaaggctgaaaatccatctgttctagaatttagtatgcc
tttccctggggagggaaaaacttcaacacacaatttcaaaggattaatta
agaaaaaaaaaaaaatctaccttttgcctggtgaatttcttgccctggcc
tagctaggtctgcttctcctgagaaaccatattcttggaggcatccagag
aatcttgcttcacttaagcattctgaacaccacagctaagaacctcccag
gagaatctggctgcaacacagcacatttgagcaactgatcacagcttgtg
tatctctctgaagaccaacaaattgtaaggcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62801201_62801738
seq2: B6Ng01-231J01.b_295_838 (reverse)

seq1  CTCCCCAA--CCCCCCACCTCTGTCT-CCCCAGTATGTGCTCCTTGATGT  47
      ||||||||  |||||||||||||||| |||||||||||||||||||||||
seq2  CTCCCCAAACCCCCCCACCTCTGTCTCCCCCAGTATGTGCTCCTTGATGT  50

seq1  A-TTGGGAGATAAGTGTGTTGGGATACGTTTTACCACACAGATAATA-TT  95
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTTGGGAGATAAGTGTGTTGGGATACGTTTTACCACACAGATAATATTT  100

seq1  CAGAGGGTTTCTTGCCAATACAATATGTTCATGATGATTAAGACTAGATA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTTTCTTGCCAATACAATATGTTCATGATGATTAAGACTAGATA  150

seq1  TTTGTAGATTTTACATATTGTATACATTCAT-AAGCTTTCTCTACAGTAT  194
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTGTAGATTTTACATATTGTATACATTCATAAAGCTTTCTCTACAGTAT  200

seq1  GAATTCTTTTATGCTTTTGAAGATGCCTGTGACATACACAGGCTTTCACA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATGCTTTTGAAGATGCCTGTGACATACACAGGCTTTCACA  250

seq1  CATAGATCACATTCATTGTGTTTCTATCCAGTATGTATTCTTTTATGTCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATCACATTCATTGTGTTTCTATCCAGTATGTATTCTTTTATGTCT  300

seq1  TTGGAGGCTATAGTGTTGTAAAAAGGCTTTCTCACATTTATTACATTTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCTATAGTGTTGTAAAAAGGCTTTCTCACATTTATTACATTTAA  350

seq1  AGGATTTCTCTCCATTATGAATTCTTCTATGCGACTGGAGGTTACTATGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCTCTCCATTATGAATTCTTCTATGCGACTGGAGGTTACTATGT  400

seq1  TGTGAAAAGGCTTTCTCACATTTATTACATCTGTAGGGTTTCTCTCCAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGGCTTTCTCACATTTATTACATCTGTAGGGTTTCTCTCCAGT  450

seq1  ATGAATTCTTCTATGTGACTGGAGATGACTATGTTGTGAAAAGGCTTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCTTCTATGTGACTGGAGATGACTATGTTGTGAAAAGGCTTTCT  500

seq1  CACATGTATTACATTTGTAGGGTTTCTCTCCAGTATGAATTCGT  538
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTATTACATTTGTAGGGTTTCTCTCCAGTATGAATTCGT  544

seq1: chr13_62639957_62641122
seq2: B6Ng01-231J01.g_70_1253

seq1  GAATTCAAACGAGTCAGCGTGTGGTTCTTTAAAAAATGAAATTTATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACGAGTCAGCGTGTGGTTCTTTAAAAAATGAAATTTATAAAT  50

seq1  TAATGCCAAAAATGGACTTTGGGGGAATATATATAACGCACAAGTATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAAAAATGGACTTTGGGGGAATATATATAACGCACAAGTATACT  100

seq1  GGCACTGCAGGTCATTCCCTGGCAGAGGCAATGGCATTAATAAAATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCAGGTCATTCCCTGGCAGAGGCAATGGCATTAATAAAATACTT  150

seq1  TTTGATGTTGTCCCTGTGTGGACTGGTAGTTGCTAAGTCCTGTAACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTGTCCCTGTGTGGACTGGTAGTTGCTAAGTCCTGTAACCTGA  200

seq1  CACACACAGCTGCAACTAATGAATGGCCTGTGTCTCAAAAAATCTGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGCTGCAACTAATGAATGGCCTGTGTCTCAAAAAATCTGAGCT  250

seq1  GACTTAACCATGTCAATGAGCATCACTCAAATCCACATAGGACAGTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAACCATGTCAATGAGCATCACTCAAATCCACATAGGACAGTACCC  300

seq1  TAACTGGAAATTCAGTATTCACATGATCACCACATAATACAGTACCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGAAATTCAGTATTCACATGATCACCACATAATACAGTACCCTAA  350

seq1  CTGGAAATTCAGTATTCATTGGAATAACCTAAATATTTCAAATTGTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATTCAGTATTCATTGGAATAACCTAAATATTTCAAATTGTATAG  400

seq1  TGTAAATATTTCAAATTGTACACCCACCAGTCTTGTGTGTTTATATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATTTCAAATTGTACACCCACCAGTCTTGTGTGTTTATATTAAA  450

seq1  ATGTACAAATTAACAAAGGCTAAGAAATCACAAAATCACACAACCTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAAATTAACAAAGGCTAAGAAATCACAAAATCACACAACCTGTGC  500

seq1  AACTCAGGTCCTTCTTCATATTGGTGAGCCCTGTAGCTGAGTGCCTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGTCCTTCTTCATATTGGTGAGCCCTGTAGCTGAGTGCCTTAAA  550

seq1  CTTGACTTAGTCTGAGATCTAGCTATTGCCTACTCTGTTTTACTCTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTAGTCTGAGATCTAGCTATTGCCTACTCTGTTTTACTCTGCAC  600

seq1  TGTACAAAGGACATTGCTCCTCCTGTTCTGTTCTGAGGGCAGAAACAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAAGGACATTGCTCCTCCTGTTCTGTTCTGAGGGCAGAAACAATG  650

seq1  CTTCATGCAAATCCTTTCCCTGTTACTGCAAAGCACAGTTCATTCACGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCAAATCCTTTCCCTGTTACTGCAAAGCACAGTTCATTCACGGA  700

seq1  GCCAAATGGGTAACATTAAAACTCTGTTGTGCTACTACCCTTTAACTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGGGTAACATTAAAACTCTGTTGTGCTACTACCCTTTAACTTAA  750

seq1  GAATACAGAAACTTTAATCAAGAGGAAAGCAAGGTCATTGCCCTGGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGAAACTTTAATCAAGAGGAAAGCAAGGTCATTGCCCTGGGAAA  800

seq1  CAACAGACTGGGATCAGGGCCCTGTAAAGCAATATACCTCTTGTCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGACTGGGATCAGGGCCCTGTAAAGCAATATACCTCTTGTCAGGAA  850

seq1  AAATGTGCCAGAAAGGCTGAAAATCCATCTGTTCTAGAA-TTAGTATGCC  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATGTGCCAGAAAGGCTGAAAATCCATCTGTTCTAGAATTTAGTATGCC  900

seq1  -TTCCCT-GGGAGGGAAAAAC-TCAACACACAA-TTCAAA-GATTAATTA  944
       |||||| ||||||||||||| ||||||||||| |||||| |||||||||
seq2  TTTCCCTGGGGAGGGAAAAACTTCAACACACAATTTCAAAGGATTAATTA  950

seq1  AG-AAAAAAAAAAAATCTACCTTTTGCCTGGTG-ATTTCT--GCCTGG-C  989
      || |||||||||||||||||||||||||||||| ||||||   ||||| |
seq2  AGAAAAAAAAAAAAATCTACCTTTTGCCTGGTGAATTTCTTGCCCTGGCC  1000

seq1  TAGCTA-GTCTGC-TCTCCTGAAGAAACCATATCCT--GAGGCATCCCAG  1035
      |||||| |||||| ||||||| ||||||||||| ||  ||||||| ||||
seq2  TAGCTAGGTCTGCTTCTCCTG-AGAAACCATATTCTTGGAGGCAT-CCAG  1048

seq1  GAGATC-TGCTTCACTTAAGCA-TCTG-ACACCACAGCCAAAGACCTCCC  1082
         ||| ||||||||||||||| |||| |||||||||| ||  |||||||
seq2  AGAATCTTGCTTCACTTAAGCATTCTGAACACCACAGCTAAGAACCTCCC  1098

seq1  AGGAG-ATCT-GCTGC-ACACAGCACAATTGAGCAACTGATCACCAGCTT  1129
      ||||| |||| ||||| |||||||||| ||||||||||||||| ||||||
seq2  AGGAGAATCTGGCTGCAACACAGCACATTTGAGCAACTGATCA-CAGCTT  1147

seq1  GTGTACTCCCCTGAAGA-CAACACAATTTGAAGGCATC  1166
      |||||   | ||||||| ||||| ||||  ||||||||
seq2  GTGTATCTCTCTGAAGACCAACA-AATTGTAAGGCATC  1184