BAC Information

Click to search

BAC

Clone NameB6Ng01-231M03
Chromosome13 (Build37)7 (Build37)
Map Location 86,102,265 - 86,102,77311,456,590 - 11,457,587
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373, LOC675662
Downstream geneCox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231M03.bB6Ng01-231M03.g
ACCGA044268GA044269
length9891,000
definitionB6Ng01-231M03.b B6Ng01-231M03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,102,265 - 86,102,773)(11,456,590 - 11,457,587)
sequence
gaattccaggctcaatagaggtttagggtggggcttgaggtgagaatgct
gagggtaatcaggactctaggagctgcttgcaatgctctgagagtctggc
agttagcatctgctttgatatgttaataggcacctaaattagacatctgt
cctgagtgtctttgggagggtagaattttaagatgtagaaattctctagg
atgctgggtgatagggaatggccctccagaagcaaggccacgcaaatgga
tttttcttttttcttttttttctttttttttgtgatattttctttattta
catttcaaatgttagcccctttcctagttttccctctgaaaatctcctat
tccctttcccctccccctgatccccaacctaaccactctcattctgtgcc
ctggcattcccctatactgggacatagaaccttcacaggacctacggcct
ctcctcccatttatcaccaactaggccatcctctactacatataaagcta
gagccacaagtcccaccatgtgttttctttgattggtggtttagtcccaa
ggagctctgtgggtactggttagttcatattgaatttcctcctatgggac
tgcaaaccccttcagttccttgggtactttctttagctccttcattgggg
accctgtgctcagtctaacggatggctgtgagcatccacttctgtatttg
tcaggcactggcagagcctctcaggagacagctatatcaggctcctgtca
gcaagctcttgttggcatctgccctagtgtctgggtttggtggttgttta
tgggatggatccccaagtgggggagtctctggatgttccttccttcagtc
tctgctccaactttgtctctgtaactcactctatggttattttgttcccc
cttctaagaactattctgagattctgggcctaattatccacttattcagt
gagtacttatcatgtttgttcttttggtgatggggttac

gaattcatactccccattactttatatctgtgttagttcctagctcccac
tagttgttcaaaagctgtctacaaatctagctgtagaagacaagactctg
gcctgtggcagtaatgctcatatgtaacctctaaaacatatgcttaatta
aaagtaggataaatcttaaaataaattagttattctttactcttggaact
atgactttcaaatatttctatcatttctcttgatttagattgaaaagttt
tatggtattttacagataatgataccttttaatcattctgtatttgaaaa
ttgaatgcaattcattaaatttattcaaaagaaaaaatattaatctaatt
ttttttttggagtttttgtttgcttggttggttggctgatttttcgagac
agggattttctgtgtagtcttggctttcctggaactcactttgtagacca
gcctggccttgaactcagaaatttgtctgcatctgcctcccaagtgttgg
gattaaaggcatgttccaccacatccagcttaattttggatttttatagt
ggcttgtctgtgtataggctgaaattcatgaaacttcctccatacaccag
agtaaaagtaaatgcatagatatatgagtctctgtcttttaagtcgtaaa
attaaaaatgcctactaccacatctaaagaaagtactaaacttcagtaaa
catatctatttcccccattccattgaaatgatagatgacaatttatttat
agggaaaacacatttaaacaattttctttcagtaagagagctacataatt
acaaatgttgtgatgaaagcattatttaagctaaattcatgaaataatgc
agaaaattagaaagagctgtacttcaagactcatttataccacccatggg
catatacttaaaaatattccatcttaccacaaggatacttgctcaactat
attcataaaggctgtatttattaatagcaagagatggaaagtaacccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86102265_86102773
seq2: B6Ng01-231M03.b_296_806

seq1  TTTTTCTTTTTTCTTTTCTTTTCTTCTTTTTTTAAATTGATGTTTTCTTC  50
      ||||||||||||||||| ||||||| ||||||     |||| ||||||| 
seq2  TTTTTCTTTTTTCTTTT-TTTTCTTTTTTTTT----GTGATATTTTCTTT  45

seq1  ATTTACGTTTAAAATGTTATCCCCTTTCC-AGTT---CCTGTCTCAAACT  96
      |||||| ||| |||||||| ||||||||| ||||   ||| |   || ||
seq2  ATTTACATTTCAAATGTTAGCCCCTTTCCTAGTTTTCCCTCTGAAAATCT  95

seq1  TCTATGATAGTGTTCCCTTACCCATCCACCCACTCCTGCATCC---CCAC  143
       |||        ||||||| ||| ||| ||   |||  || ||   ||||
seq2  CCTA--------TTCCCTTTCCCCTCCCCCTGATCC-CCAACCTAACCAC  136

seq1  CCTCA-------------AATTTCCCTACACTGAGGTACCCATCGAGCTT  180
       ||||              ||| ||||| |||| |     ||| || | |
seq2  TCTCATTCTGTGCCCTGGCATTCCCCTATACTGGG----ACATAGAACCT  182

seq1  TCACAGAA-------CCTCTACCCCCATTGATGCCTGGCAAGGCCATCAT  223
      |||||| |       ||||| | |||||| ||  |   | |||||||| |
seq2  TCACAGGACCTACGGCCTCTCCTCCCATTTATCACCAACTAGGCCATCCT  232

seq1  CTGCTACATGTGCGGCTGGAGCCATGGGTCCCTCCATGTGTACTCTTTGG  273
      || |||||| |   ||| ||||||   ||||| ||||||||  |||||| 
seq2  CTACTACATATAAAGCTAGAGCCACAAGTCCCACCATGTGTTTTCTTTGA  282

seq1  TTGGTGGCTTAGTCCCTGGGAGCTCTGGGGTGTCTGGTTGGTTGATAGTG  323
      ||||||| ||||||||  ||||||||| ||   |||||| ||| ||| ||
seq2  TTGGTGGTTTAGTCCCAAGGAGCTCTGTGGGTACTGGTTAGTTCATATTG  332

seq1  TTGTTCTTCCTGTGTGATTGCAATCCCCTTCAGCTCCTTCAGTCCTTTCT  373
         ||| |||| || || ||||| ||||||||| |||||  || ||||||
seq2  AATTTCCTCCTATGGGACTGCAAACCCCTTCAGTTCCTTGGGTACTTTCT  382

seq1  ATAACTCTTCCATTGGGAACCCCATGCTTGCTCAGTCCAATGGTTGGCTG  423
       || ||| | ||||||| ||||  ||  ||||||||| || || ||||||
seq2  TTAGCTCCTTCATTGGGGACCC--TG--TGCTCAGTCTAACGGATGGCTG  428

seq1  CGAGTATCCACCTCTGTATTTGTCAGACACTGGCAGAACCTCGCAGGAGA  473
       ||| |||||| |||||||||||||| |||||||||| |||| |||||||
seq2  TGAGCATCCACTTCTGTATTTGTCAGGCACTGGCAGAGCCTCTCAGGAGA  478

seq1  CAACTATATCAGGCTCCTTTCAGCAAGCACTTCTTG  509
      || ||||||||||||||| |||||||||   |||||
seq2  CAGCTATATCAGGCTCCTGTCAGCAAGC---TCTTG  511


seq1: chr7_11456590_11457587
seq2: B6Ng01-231M03.g_74_1073

seq1  GAATTCATACT-CCTATTACTTTATATCTGTGTTAGTTCCTAGCTCCCAC  49
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTCCCCATTACTTTATATCTGTGTTAGTTCCTAGCTCCCAC  50

seq1  TAGTTGTTCAAAAGCTGTCTACAAATCTAGCTGTAGAAGACAAGACTCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTTCAAAAGCTGTCTACAAATCTAGCTGTAGAAGACAAGACTCTG  100

seq1  GCCTGTGGCAGTAATGCTCATATGTAACCTCTAAAACATATGCTTAATTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGCAGTAATGCTCATATGTAACCTCTAAAACATATGCTTAATTA  150

seq1  AAAGTAGGATAAATCTTAAAATAAATTAGTTATTCTTTACTCTTGGAACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGATAAATCTTAAAATAAATTAGTTATTCTTTACTCTTGGAACT  200

seq1  ATGACTTTCAAATATTTCTATCATTTCTCTTGATTTAGATTGAAAAGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTCAAATATTTCTATCATTTCTCTTGATTTAGATTGAAAAGTTT  250

seq1  TATGGTATTTTACAGATAATGATACCTTTTAATCATTCTGTATTTGAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTATTTTACAGATAATGATACCTTTTAATCATTCTGTATTTGAAAA  300

seq1  TTGAATGCAATTCATTAAATTTATTCAAAAGAAAAAATATTAATCTAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCAATTCATTAAATTTATTCAAAAGAAAAAATATTAATCTAATT  350

seq1  TTTTTTTTGGAGTTTTTGTTTGCTTGGTTGGTTGGCTGATTTTTCGAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGGAGTTTTTGTTTGCTTGGTTGGTTGGCTGATTTTTCGAGAC  400

seq1  AGGGATTTTCTGTGTAGTCTTGGCTTTCCTGGAACTCACTTTGTAGACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTTCTGTGTAGTCTTGGCTTTCCTGGAACTCACTTTGTAGACCA  450

seq1  GCCTGGCCTTGAACTCAGAAATTTGTCTGCATCTGCCTCCCAAGTGTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCTTGAACTCAGAAATTTGTCTGCATCTGCCTCCCAAGTGTTGG  500

seq1  GATTAAAGGCATGTTCCACCACATCCAGCTTAATTTTGGATTTTTATAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGTTCCACCACATCCAGCTTAATTTTGGATTTTTATAGT  550

seq1  GGCTTGTCTGTGTATAGGCTGAAATTCATGAAACTTCCTCCATACACCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCTGTGTATAGGCTGAAATTCATGAAACTTCCTCCATACACCAG  600

seq1  AGTAAAAGTAAATGCATAGATATATGAGTCTCTGTCTTTTAAGTCGTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGTAAATGCATAGATATATGAGTCTCTGTCTTTTAAGTCGTAAA  650

seq1  ATTAAAAATGCCTACTACCACATCTAAAGAAAGTACTAAACTTCAGTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATGCCTACTACCACATCTAAAGAAAGTACTAAACTTCAGTAAA  700

seq1  CATATCTATTTCCCCCATTCCATTGAAATGATAGATGACAATTTATTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTATTTCCCCCATTCCATTGAAATGATAGATGACAATTTATTTAT  750

seq1  AGGGAAAACACATTTAAACAATTTTCTTTCAGTAAGAGAGCTACATAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAACACATTTAAACAATTTTCTTTCAGTAAGAGAGCTACATAATT  800

seq1  ACAAATGTTGTGATGAAAGCATTATTTAAGCTAAATTCATGAAATAATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTTGTGATGAAAGCATTATTTAAGCTAAATTCATGAAATAATGC  850

seq1  AGAAAATTAGAAAGAGCTGTACTTCAAGACTCATTTATACCACCCATGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTAGAAAGAGCTGTACTTCAAGACTCATTTATACCACCCATGGG  900

seq1  CATATACTTAAAAATATTCCATCTTACCACAAGGATACTTGCTCAACTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTTAAAAATATTCCATCTTACCACAAGGATACTTGCTCAACTAT  950

seq1  ATTCATAAAGGCTGTATTTA-TAATAGCAAGAAGATGGAAA-TAACCCAT  997
      |||||||||||||||||||| |||||||||| ||||||||| ||||||||
seq2  ATTCATAAAGGCTGTATTTATTAATAGCAAG-AGATGGAAAGTAACCCAT  999

seq1  A  998
      |
seq2  A  1000


| Home | SequenceCutter | Blast | Download |