BAC Information

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BAC

Clone NameB6Ng01-232C14
Chromosome13 (Build37)
Map Location 27,112,240 - 27,113,389
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
Downstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232C14.bB6Ng01-232C14.g
ACCGA044567GA044568
length1,1621,191
definitionB6Ng01-232C14.b B6Ng01-232C14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcttaccttttactagttaagatgcaataatagtgtgttttag
aaaagttcaagatactaaccaattataaacagatgtagtttagcattacg
gttatataagataactaaaattccaaaataacgaaatagggatttacagc
tataaggaaactgtcttctctaacggaagaccaagcattgatgagtgtag
ggaatgatcacaatcgacacgattgcagccttcttgatttgtatctaaca
tgactgtttctgaataaccttgatgtttttttttctaatgtgattttttt
tcctagtcctgtaagtaaacaaagctgtcagcatgggatatgcagctcta
aaactattgacactgtcagctacaagaatatataggatatcttggaaaca
agattaaggtaaactaatgttttggtttatagtgaagtattcacgacaat
ctcaaaggtatgcacacttagtgctcagttggaggtgccagtttaggaga
tggtttaatatggctgggcactaatatttatgaccttccctgggcttctg
tctcagctatgctttctgggttgtggataagaagactctcagtgatgtgg
tcatagccaagagtcatttctatctctctgccatctcctccaccaaagag
tatactttaaactgtaaacctgaataaaaccttgttatgttgtattttgt
cagatatttggtctgagtcatgagtacattctagtttgaacaaaactttt
gttctgaaattttcagaagccccctttttactcaaattgcagtgatctgg
tcttgtggtcatttaagaactcttttctatcagcaacccaactctgcaat
cctccatctatagttctcttttagttagtcccatggtgtctttgggacta
gctctcaaatactgggaaccagttagtttcatgaaattttttttctgact
tcagacaagttatttttagattttttcttgcatatatggcttaaggcagt
agagtcatgtagacagagctgggcatgaaaacttctcttattcttttttt
taacctcccttattctaggacccacatgggtgtgtatatcaagaagaagc
attcatagcagttgctatcgaatgaaaatctgcctttctggctttccagc
tcaggtgccttt
gaattcacatcttctggttgtattccattttttttctaaccaagaatgaa
tgacaggctcataggagactccctcagaggcccttggtgaatagagtcaa
aggaaactcaatgatcaggttcattcttatccttcctgtatcagttgcct
gctccccagaagtaatggaatccttaatttggtaggaaaatttgtatttt
caaaaaatagatatcataagcaaattgaaagggaagaataaggttgaaat
aataaaatctttcccatcaaatgaaaattctggatctgtcaagttcgcta
gtgaaatccaaccaatatttgaacaggactttaactctttaaaaattatg
tcaaaagttaaaggagagaacttttccaaatgtgtttgtgtcgaccatca
ttaaatagataccagaactaggtaaggttcacaataacacaaaataatga
tgggcaaaatagaagacacaataaacaaaaagactatttatattcttaca
ttggtaaattaatattgttaaaatatcaatggtattgagaatgaccagtg
aatttaatgctgtcttaacataaaaataactttcccttttactcctgatt
attttcttatttacatttcaaatgttgtcccccttcacagtttcccctcc
aaaagccccctatgccatctcccgtcttccctctgcctgtatgggggtgc
tccatcacccacccacccacccactcctatctcaccctacaagcatccca
ctgtatcattctcctagcattaccttaaactgtgtcatggagccaacaga
ggaccaaaagtgtctccttccactgatctctgctacatatgcaacttgag
ccatggatccctccatgtatactctttggttggtggattaatccctggga
ggtctgggtcagttacttgatattgtttcttcctagcccaatagaaattc
ccagataccaatagaagcagatgttttctaaggacctaatggggtgacaa
ttagtcaaaatacaaaaaagagaaggggagaggtcctgtagtgacttata
ccaatgataggcattgacttcctcaatgaggatagcactcacccatctca
aaaattttaccgaatggttctgtctcaattactgcatggccagagtggac
tcagactgatgaaggccacctcagtaacccgctcccatcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27112240_27113389
seq2: B6Ng01-232C14.b_47_1208

seq1  GAATTCTTCTTACCTTTTACTAGTTAAGATGCAATAATAGTGTGTTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTACCTTTTACTAGTTAAGATGCAATAATAGTGTGTTTTAG  50

seq1  AAAAGTTCAAGATACTAACCAATTATAAACAGATGTAGTTTAGCATTACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCAAGATACTAACCAATTATAAACAGATGTAGTTTAGCATTACG  100

seq1  GTTATATAAGATAACTAAAATTCCAAAATAACGAAATAGGGATTTACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAAGATAACTAAAATTCCAAAATAACGAAATAGGGATTTACAGC  150

seq1  TATAAGGAAACTGTCTTCTCTAACGGAAGACCAAGCATTGATGAGTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGAAACTGTCTTCTCTAACGGAAGACCAAGCATTGATGAGTGTAG  200

seq1  GGAATGATCACAATCGACACGATTGCAGCCTTCTTGATTTGTATCTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATCACAATCGACACGATTGCAGCCTTCTTGATTTGTATCTAACA  250

seq1  TGACTGTTTCTGAATAACCTTGATGTTTTTTTTTCTAATGTGATTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTCTGAATAACCTTGATGTTTTTTTTTCTAATGTGATTTTTTT  300

seq1  TCCTAGTCCTGTAAGTAAACAAAGCTGTCAGCATGGGATATGCAGCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTCCTGTAAGTAAACAAAGCTGTCAGCATGGGATATGCAGCTCTA  350

seq1  AAACTATTGACACTGTCAGCTACAAGAATATATAGGATATCTTGGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTGACACTGTCAGCTACAAGAATATATAGGATATCTTGGAAACA  400

seq1  AGATTAAGGTAAACTAATGTTTTGGTTTATAGTGAAGTATTCACGACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGGTAAACTAATGTTTTGGTTTATAGTGAAGTATTCACGACAAT  450

seq1  CTCAAAGGTATGCACACTTAGTGCTCAGTTGGAGGTGCCAGTTTAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGTATGCACACTTAGTGCTCAGTTGGAGGTGCCAGTTTAGGAGA  500

seq1  TGGTTTAATATGGCTGGGCACTAATATTTATGACCTTCCCTGGGCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAATATGGCTGGGCACTAATATTTATGACCTTCCCTGGGCTTCTG  550

seq1  TCTCAGCTATGCTTTCTGGGTTGTGGATAAGAAGACTCTCAGTGATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTATGCTTTCTGGGTTGTGGATAAGAAGACTCTCAGTGATGTGG  600

seq1  TCATAGCCAAGAGTCATTTCTATCTCTCTGCCATCTCCTCCACCAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCCAAGAGTCATTTCTATCTCTCTGCCATCTCCTCCACCAAAGAG  650

seq1  TATACTTTAAACTGTAAACCTGAATAAAACCTTGTTATGTTGTATTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTAAACTGTAAACCTGAATAAAACCTTGTTATGTTGTATTTTGT  700

seq1  CAGATATTTGGTCTGAGTCATGAGTACATTCTAGTTTGAACAAAACTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTGGTCTGAGTCATGAGTACATTCTAGTTTGAACAAAACTTTT  750

seq1  GTTCTGAAATTTTCAGAAGCCCCCTTTTTACTCAAATTGCAGTGATCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAATTTTCAGAAGCCCCCTTTTTACTCAAATTGCAGTGATCTGG  800

seq1  TCTTGTGGTCATTTAAGAACTCTTTTCTATCAGCAACCCAACTCTGCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGGTCATTTAAGAACTCTTTTCTATCAGCAACCCAACTCTGCAAT  850

seq1  CCTCCATCTATAGTTCTC-TTTAGTTAGTCCCATGGTGTCTTTGGGACTA  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTCCATCTATAGTTCTCTTTTAGTTAGTCCCATGGTGTCTTTGGGACTA  900

seq1  GCTCTCAAATACT-GGAACCAGTTAGTTTCATGAAA-TTTTTTTCTGACT  947
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  GCTCTCAAATACTGGGAACCAGTTAGTTTCATGAAATTTTTTTTCTGACT  950

seq1  TCAGACAAGT--ATTTTAGATTTTT--CTGCATATA-GGCTTAA-GCAGT  991
      ||||||||||   ||||||||||||   |||||||| ||||||| |||||
seq2  TCAGACAAGTTATTTTTAGATTTTTTCTTGCATATATGGCTTAAGGCAGT  1000

seq1  AGAGTCATGTAAGACAGAGCT-GGCATG-AAACCTCCCTAATTCTTTTTT  1039
      |||||||||| |||||||||| |||||| |||| || || ||||||||||
seq2  AGAGTCATGT-AGACAGAGCTGGGCATGAAAACTTCTCTTATTCTTTTTT  1049

seq1  TTAAACCTCCCTAATTCTAAGA-CCACAT-GGTGTGTATATCAAG-AGAA  1086
      || ||||||||| |||||| || |||||| ||||||||||||||| ||||
seq2  TT-AACCTCCCTTATTCTAGGACCCACATGGGTGTGTATATCAAGAAGAA  1098

seq1  GCATCCATAGCAGTTGCTATCGAATGAAAAACTGCC-TTCTTGCTTTCCA  1135
      |||| ||||||||||||||||||||||||| ||||| |||| ||||||||
seq2  GCATTCATAGCAGTTGCTATCGAATGAAAATCTGCCTTTCTGGCTTTCCA  1148

seq1  GCTCAAGTTGCCTTT  1150
      |||| || |||||||
seq2  GCTC-AGGTGCCTTT  1162