BAC Information

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BAC

Clone NameB6Ng01-232F05
Chromosome13 (Build37)
Map Location 25,626,279 - 25,753,075
singlet/doubletdoublet
Overlap geneLOC214973
Upstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
Downstream geneLOC666221, LOC100042180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232F05.bB6Ng01-232F05.g
ACCGA044691GA044692
length1,0831,170
definitionB6Ng01-232F05.b B6Ng01-232F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,626,279 - 25,627,334)(25,751,915 - 25,753,075)
sequence
gaattctctgtttaactctatgccacctttttaattaggcttggtttttt
ttctaatgattttttttggttgttgtggagttctttgtatattctaatgc
taaccctttaatcaaatgaatattagtaaagttttttttttaaccttctg
tgttctgcctcttcattccatggttttatttattaattgttgctcttaat
ggttgtgctattgacttcttgttgaaaaagcctttttctgtgccaatgaa
ttgtttgcatttctcactttcttctctatcagatacaggttattagatct
tcttgaggaagggtgtatggatggggttcaggaaagaaggtgaagaaaat
tggtctacaagcaggaggcgatggtggaaggaaatgctcacatgggtcta
gtgtacttatacatcattttaagattgcagagagttcatacttttaggct
tggcttttgtgtactcagaacagttttctaggaactaaatctaggtagcg
attaatccacacgtggataatttctttatattgagaaatattaccccatt
acagagatgtataatggtgacatctgtatgggcaatagtgccatctgaca
ttaggctagccttactctttgccattttgtgtacttttttttcccatgcc
ttatgcaccagccagtatttccagcatttgttaaatgagagtggaagtga
acattcttgcctgcctcttagtcttgtataaaatccttcaactcttcatg
tatcgcaatttgttcaccccactggttcacctactgaaaggtcaatctgg
ggcatttttagtgcattgattttttacaaagttgataaaaaaaatgctgc
ccagctttctgtagtaatgtaaaccttcccagctatctgacattaatgcc
tggagagaaaattttttggtttgtacatttttgcatttcccacagtcatc
atcattatcaatcatcaatgattttgccttactggaattagactgaaaga
gttggcctgctattttcattttttggtgagtaactttttttaaaaataca
catatagacatgaatttttgatatatgacttct
gaattctttaaataatgcatctgtaaaaattcattagtgagtatattgat
aagtatataataataataaatgaactatagagtaatgataaaagtattat
attaagcatatgtaactttaaagcaattttaaatgaaaggttatttttaa
taaattgcagatttaaactaactatatctcaaagtaatttaaatatatac
accactaacagtgaaataattttaggtcatctgtatatttatgactttta
tcagagcatcagactttcccagatggattccaaggaagcttattattttc
tagttaaaattcaggagaagttttcaataagaaattgagttgccaaccac
agagagaatcagaattggagatggccagagaaatttggccaaacagtcca
aagatttgaggttaactttaccagtgctcatgtctgatcttaccacatga
agtgtaatggtttccattattgctggcccaggtatgaccactcatataag
cgtatttattacagcttataatggcaattttaaaaaaataattgagccat
ttttgtattagaatggtgtgcagcagagcaaatgaataatttaagagtat
agtgaaatttctagtttacagttttataaagaatcacacgaatgaaatat
tgagaatgaaggaagctgagagactgtcttagtcagggtttctattcctg
cacaaacatcatgaccaagaagcaagttggggaggaaacggtttattcag
cttacaattccacactgctatttatcaccaaggaagtcaggactggaact
caagcaggtcaggaagcaggagctgatacagaggccatggagggatgttc
tttactggcttgcttcccctggctgctcaacctgcttttcttatagaccc
aagactaccagcccagagatggtcccacccacaaggggcctttccccctt
gatcactaattgagaaaaatgccttacagttggatctcatggaggcattt
cctcaactgaagcttcctttctcttgtgataactccagctgtgtcagttg
acccaaaaacttagccaggtaccaggagacaagcattcactggtatcctc
tggctgcttgatccttcatgaatgctgcctccactgagaaaggacacgct
gttctactggctagaatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25626279_25627334
seq2: B6Ng01-232F05.b_47_1129

seq1  GAATTCTCTGTTTAACTCTATGCCACCTTTTTAATTAGGCTTGGTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAACTCTATGCCACCTTTTTAATTAGGCTTGGTTTTTT  50

seq1  TTCTAATGATTTTTTTTGGTTGTTGTGGAGTTCTTTGTATATTCTAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGATTTTTTTTGGTTGTTGTGGAGTTCTTTGTATATTCTAATGC  100

seq1  TAACCCTTTAATCAAATGAATATTAGTAAAGTTTTTTTTTTAACCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTTAATCAAATGAATATTAGTAAAGTTTTTTTTTTAACCTTCTG  150

seq1  TGTTCTGCCTCTTCATTCCATGGTTTTATTTATTAATTGTTGCTCTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCCTCTTCATTCCATGGTTTTATTTATTAATTGTTGCTCTTAAT  200

seq1  GGTTGTGCTATTGACTTCTTGTTGAAAAAGCCTTTTTCTGTGCCAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGCTATTGACTTCTTGTTGAAAAAGCCTTTTTCTGTGCCAATGAA  250

seq1  TTGTTTGCATTTCTCACTTTCTTCTCTATCAGATACAGGTTATTAGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCATTTCTCACTTTCTTCTCTATCAGATACAGGTTATTAGATCT  300

seq1  TCTTGAGGAAGGGTGTATGGATGGGGTTCAGGAAAGAAGGTGAAGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGAAGGGTGTATGGATGGGGTTCAGGAAAGAAGGTGAAGAAAAT  350

seq1  TGGTCTACAAGCAGGAGGCGATGGTGGAAGGAAATGCTCACATGGGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAAGCAGGAGGCGATGGTGGAAGGAAATGCTCACATGGGTCTA  400

seq1  GTGTACTTATACATCATTTTAAGATTGCAGAGAGTTCATACTTTTAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTATACATCATTTTAAGATTGCAGAGAGTTCATACTTTTAGGCT  450

seq1  TGGCTTTTGTGTACTCAGAACAGTTTTCTAGGAACTAAATCTAGGTAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGTGTACTCAGAACAGTTTTCTAGGAACTAAATCTAGGTAGCG  500

seq1  ATTAATCCACACGTGGATAATTTCTTTATATTGAGAAATATTACCCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCCACACGTGGATAATTTCTTTATATTGAGAAATATTACCCCATT  550

seq1  ACAGAGATGTATAATGGTGACATCTGTATGGGCAATAGTGCCATCTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATGTATAATGGTGACATCTGTATGGGCAATAGTGCCATCTGACA  600

seq1  TTAGGCTAGCCTTACTCTTTGCCA-TTTGTGTAC--TTTTTTCCCATGCC  647
      |||||||||||||||||||||||| |||||||||  ||||||||||||||
seq2  TTAGGCTAGCCTTACTCTTTGCCATTTTGTGTACTTTTTTTTCCCATGCC  650

seq1  TTATGCACCAGCCAGTATTTCCAGCA-TTGTTAAATGAGAGTGGAAGTGA  696
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTATGCACCAGCCAGTATTTCCAGCATTTGTTAAATGAGAGTGGAAGTGA  700

seq1  ACATTCTTGCCTGCCTCTTAGTCTTGTATAAAATCCTTCAGCTCTTCATG  746
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACATTCTTGCCTGCCTCTTAGTCTTGTATAAAATCCTTCAACTCTTCATG  750

seq1  TATCGCAATTTGTTCA-CCCACTGGTTCACCTACTGAAAGG-CAATCTGG  794
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  TATCGCAATTTGTTCACCCCACTGGTTCACCTACTGAAAGGTCAATCTGG  800

seq1  GGCATTTTTAGTGCATTGA-TTTTTACAAAGTTGAT-AAAAAAATGCTGC  842
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  GGCATTTTTAGTGCATTGATTTTTTACAAAGTTGATAAAAAAAATGCTGC  850

seq1  CCAGCTTTCTGTAGTAATGTAAACCT--CCAGCTATCTGACATTAATGCC  890
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  CCAGCTTTCTGTAGTAATGTAAACCTTCCCAGCTATCTGACATTAATGCC  900

seq1  T-GAGAG-AAATTTTTTGG-TTGTACA-TTTTGCA-TTCCCACAGTCATC  935
      | ||||| ||||||||||| ||||||| ||||||| ||||||||||||||
seq2  TGGAGAGAAAATTTTTTGGTTTGTACATTTTTGCATTTCCCACAGTCATC  950

seq1  ATCATTATC-ATCATC-ATGATTTTGCC-TACT-GTATTAGACTGAAAGA  981
      ||||||||| |||||| ||||||||||| |||| | ||||||||||||||
seq2  ATCATTATCAATCATCAATGATTTTGCCTTACTGGAATTAGACTGAAAGA  1000

seq1  GTT-GCCTGCTA-TTTCATTTTT--GTGAGTA---CTTTTTAAAAATACA  1024
      ||| |||||||| ||||||||||  |||||||    ||||||||||||||
seq2  GTTGGCCTGCTATTTTCATTTTTTGGTGAGTAACTTTTTTTAAAAATACA  1050

seq1  CATATAGACATTGAATTTTGATA-ATGACTTCT  1056
      |||||||||||  | |||||||| |||||||||
seq2  CATATAGACATGAATTTTTGATATATGACTTCT  1083

seq1: chr13_25751915_25753075
seq2: B6Ng01-232F05.g_69_1238 (reverse)

seq1  GAGATTCTTTGGCAAGTAG-ACAGC-TGTCCTTTCTCAGTG--AGCAGCA  46
      |||||||  | || ||||| ||||| |||||||||||||||   ||||||
seq2  GAGATTC--TAGCCAGTAGAACAGCGTGTCCTTTCTCAGTGGAGGCAGCA  48

seq1  TTTCATGGAAGATC-AGCAG-CAGAGATAACCAGTTGATGGTTTGTCTC-  93
       |||||| | |||| ||||| |||||   ||||| |||  | ||||||| 
seq2  -TTCATGAAGGATCAAGCAGCCAGAGGATACCAG-TGAATGCTTGTCTCC  96

seq1  -TGTA-CTGGCTA--GTTTTGTGTCAACTTGACACAGCTGGAGTTATCAC  139
        ||| |||||||   ||||| |||||| |||||||||||||||||||||
seq2  TGGTACCTGGCTAAGTTTTTGGGTCAAC-TGACACAGCTGGAGTTATCAC  145

seq1  -AGAGAAAGG-AGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGT  187
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGGAAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGT  195

seq1  AAGGCA-TTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTG  236
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTG  245

seq1  GGACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAG-AAAGCAGGTTGA  285
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  GGACCATCTCTGGGCTGGTAGTCTTGGG-TCTATAAGAAAAGCAGGTTGA  294

seq1  GCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGT  335
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-AGCCAGGGGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGT  343

seq1  ATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGG  393

seq1  TGATAAATAGCAGTGTGGAATTGTAAGCTGAATAAACCGTTTCCTCCCCA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATAGCAGTGTGGAATTGTAAGCTGAATAAACCGTTTCCTCCCCA  443

seq1  ACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAG  493

seq1  ACAGTCTCTCAGCTTCCTTCATTCTCAATATTTCATTCGTGTGATTCTTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCTCAGCTTCCTTCATTCTCAATATTTCATTCGTGTGATTCTTT  543

seq1  ATAAAACTGTAAACTA-AAATTTCACTATACTCTTAAATTATTCATTTGC  584
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAAAACTGTAAACTAGAAATTTCACTATACTCTTAAATTATTCATTTGC  593

seq1  TCTGCTGCACACCATTCTAATACAAAAATGGCTCAATTATTTTTTTAAAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCACACCATTCTAATACAAAAATGGCTCAATTATTTTTTTAAAA  643

seq1  TTGCCATTATAAGCTGTAATAAATACGCTTATATGAGTGGTCATACCTGG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTATAAGCTGTAATAAATACGCTTATATGAGTGGTCATACCTGG  693

seq1  GCCAGCAATAATGGAAACCATTACACTTCATGTGGTAAGATCAGACATGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAATAATGGAAACCATTACACTTCATGTGGTAAGATCAGACATGA  743

seq1  GCACTGGTAAAGTTAACCTCAAATCTTTGGACTGTTTGGCCAAATTTCTC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGTAAAGTTAACCTCAAATCTTTGGACTGTTTGGCCAAATTTCTC  793

seq1  TGGCCATCTCCAATTCTGATTCTCTCTGTGGTTGGCAACTCAATTTCTTA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCTCCAATTCTGATTCTCTCTGTGGTTGGCAACTCAATTTCTTA  843

seq1  TTGAAAACTTCTCCTGAATTTTAACTAGAAAATAATAAGCTTCCTTGGAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACTTCTCCTGAATTTTAACTAGAAAATAATAAGCTTCCTTGGAA  893

seq1  TCCATCTGGGAAAGTCTGATGCTCTGATAAAAGTCATAAATATACAGATG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGGGAAAGTCTGATGCTCTGATAAAAGTCATAAATATACAGATG  943

seq1  ACCTAAAATTATTTCACTGTTAGTGGTGTATATATTTAAATTACTTTGAG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAATTATTTCACTGTTAGTGGTGTATATATTTAAATTACTTTGAG  993

seq1  ATATAGTTAGTTTAAATCTGCAATTTATTAAAAATAACCTTTCATTTAAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTAGTTTAAATCTGCAATTTATTAAAAATAACCTTTCATTTAAA  1043

seq1  ATTGCTTTAAAGTTACATATGCTTAATATAATACTTTTATCATTACTCTA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTAAAGTTACATATGCTTAATATAATACTTTTATCATTACTCTA  1093

seq1  TAGTTCATTTATTATTATTATATACTTATCAATATACTCACTAATGAATT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATTTATTATTATTATATACTTATCAATATACTCACTAATGAATT  1143

seq1  TTTACAGATGCATTATTTAAAGAATTC  1161
      |||||||||||||||||||||||||||
seq2  TTTACAGATGCATTATTTAAAGAATTC  1170