BAC Information

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BAC

Clone NameB6Ng01-233B19
Chromosome13 (Build37)
Map Location 22,337,989 - 22,485,064
singlet/doubletdoublet
Overlap geneV1ri6, LOC665726, V1rh21, V1ri3, V1rh4
Upstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
Downstream geneV1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233B19.bB6Ng01-233B19.g
ACCGA045264GA045265
length9931,135
definitionB6Ng01-233B19.b B6Ng01-233B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,484,077 - 22,485,064)(22,337,989 - 22,339,117)
sequence
gaattccaagtttcccaagccaaaatttcttcctctgtttctcattcctt
ttcatcatatttccccacccaattcccaaagcctgaggttcatgctaaac
ctggctgtcttccccacatcacacaaagactctgggaaacagctagtcaa
cagctgcaacatgtctctcatttagtaactttatcttccacatctacctt
cttttgttccatattcctttcacatctgcattttgatgtgtcaacaattt
ctataatgacatttgaattcaaaggcttataacttcaatttctacatctt
aatatgttatggtttttatattgaccattatttgatttcactctgtatga
atgtttactagatacttttaaaaggtagtccttggtgtgcattcaagttg
tataacttttctgggtaaaacctcagttagagctgaatcaccagacgatg
tcctgaaaagcctcttgtgtgaaaaattcatgtaaacatcgggttgcagc
cagggacagtgccctgtagaaacctgggatgcttcctaggagagttggta
ggaagtcatctgattccattggatgactcagtgcatctgtggccccagtg
aatgttctcagagcacctaagaaaccatggagcagctctggacaatatac
tactatggatgagggggatggggaaaggggactcatgagatgttagctac
tgccatttgatgagtgtagtttatgagttaagagctctcaatatggctgc
atgtagcacagtaggttaggccataacattgtgagcagggactctcccat
ctaagaggtcatggtggcatttgcctctgtggggccgtgggagcaacagt
ttatgtcagttttgctttacagcctgcttctcctcctgtttctttcccaa
cctgtttgtcatgcaagatgctttgttctaagttaaaaacatagcccttc
ttcaccaatgttggtatttaacctagtttgaatattattacaa
gaattcctaaaattatgtcattattttttaagctcttttaaaatgggact
gctattaggtcctttctgatagtcaaaacttcaatgaattcttggccagt
ccctaagtttcaccagtaattgcttctgagataataaacaattattctat
tacttagagcacattccaaaagattgtaaaaccattaaccaaatgtctta
aaaggggaattaataatttattacaggtggtagaacagaatataaagcat
ttactggatttatctatataaatttcagtcatagcttagttatggttttt
aattgttcaatttaatttaaattgttcaatttatgatttgaatttatgtg
taaacctgtgataaactttttaccatgtgatcatgtattcggaaagatgt
ataagtgctgagtacaagagaagaggggcacagctccttatccccttttc
ttagcaattctccttgttcctacttttcttggcattattctccttatgtt
cctcttcttagcactccttatcctctttttcttagatcccacctattccc
ttttcctagatcccttatctcccttttcttatgagcctgtttcccctttt
ttcttcgaagctttcataggaaactttttacaacttagagataaatacta
aaatcactttcaaaagtgtccctttttcttttccattttttattaggtat
ttagctcatttatatttccaatgctataccaaaagtcccccatacccacc
cacccccactcccctatccacccactccccctttttggccctggcgttcc
cctgtactggggcatataaagtttgcaagtccaatgggcctctctttgca
gtgatggccgactaggccatcttttgatacatatgcagctagagacaaag
agctccggggtactgcttagttcatattgttgttccacctatagggttgc
agttccctttagttccttgggtgctttctctagttcctccattgggggcc
ctgtgtccattcatagctgactgtgagcatcacttctgtgtttgctaggc
cctggccatagtctcaacaagagacagccattatctgggttccttccagc
aatcttgtctgatggttatgcaattgggttgtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22484077_22485064
seq2: B6Ng01-233B19.b_44_1036 (reverse)

seq1  TTTTAATAATA-TCCAACTAGGTTAAATACC-ACATTGGTG-AGAAGGGC  47
      || |||||||| || |||||||||||||||| ||||||||| ||||||||
seq2  TTGTAATAATATTCAAACTAGGTTAAATACCAACATTGGTGAAGAAGGGC  50

seq1  TATGTCTCTAACTTAGAACAAAGCATCCTGCCTGACAAACAGGTTGGGAA  97
      ||||| | ||||||||||||||||||| ||| ||||||||||||||||||
seq2  TATGTTTTTAACTTAGAACAAAGCATCTTGCATGACAAACAGGTTGGGAA  100

seq1  AGAAACAGGAGGAGAAGCAGGCTGTAAAGC-AAACTGACAT-AACTGTTG  145
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  AGAAACAGGAGGAGAAGCAGGCTGTAAAGCAAAACTGACATAAACTGTTG  150

seq1  CTCCCACGGCCCCACAGAGGCAAATGCCACCATGACCTCTTAGATGGGAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACGGCCCCACAGAGGCAAATGCCACCATGACCTCTTAGATGGGAG  200

seq1  AGTCCCTGCTCACAATGTTATGGCCTAACCTACTGTGCTACATGCAGCCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGCTCACAATGTTATGGCCTAACCTACTGTGCTACATGCAGCCA  250

seq1  TATTGAGAGCTCTTAACTCATAAACTACACTCATCAAATGGCAGTAGCTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGAGCTCTTAACTCATAAACTACACTCATCAAATGGCAGTAGCTA  300

seq1  ACATCTCATGAGTCCCCTTTCCCCATCCCCCTCATCCATAGTAGTATATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCATGAGTCCCCTTTCCCCATCCCCCTCATCCATAGTAGTATATT  350

seq1  GTCCAGAGCTGCTCCATGGTTTCTTAGGTGCTCTGAGAACATTCACTGGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGCTGCTCCATGGTTTCTTAGGTGCTCTGAGAACATTCACTGGG  400

seq1  GCCACAGATGCACTGAGTCATCCAATGGAATCAGATGACTTCCTACCAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGATGCACTGAGTCATCCAATGGAATCAGATGACTTCCTACCAAC  450

seq1  TCTCCTAGGAAGCATCCCAGGTTTCTACAGGGCACTGTCCCTGGCTGCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGGAAGCATCCCAGGTTTCTACAGGGCACTGTCCCTGGCTGCAA  500

seq1  CCCGATGTTTACATGAATTTTTCACACAAGAGGCTTTTCAGGACATCGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATGTTTACATGAATTTTTCACACAAGAGGCTTTTCAGGACATCGTC  550

seq1  TGGTGATTCAGCTCTAACTGAGGTTTTACCCAGAAAAGTTATACAACTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTCAGCTCTAACTGAGGTTTTACCCAGAAAAGTTATACAACTTG  600

seq1  AATGCACACCAAGGACTACCTTTTAAAAGTATCTAGTAAACATTCATACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACACCAAGGACTACCTTTTAAAAGTATCTAGTAAACATTCATACA  650

seq1  GAGTGAAATCAAATAATGGTCAATATAAAAACCATAACATATTAAGATGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAATCAAATAATGGTCAATATAAAAACCATAACATATTAAGATGT  700

seq1  AGAAATTGAAGTTATAAGCCTTTGAATTCAAATGTCATTATAGAAATTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGAAGTTATAAGCCTTTGAATTCAAATGTCATTATAGAAATTGT  750

seq1  TGACACATCAAAATGCAGATGTGAAAGGAATATGGAACAAAAGAAGGTAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATCAAAATGCAGATGTGAAAGGAATATGGAACAAAAGAAGGTAG  800

seq1  ATGTGGAAGATAAAGTTACTAAATGAGAGACATGTTGCAGCTGTTGACTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAGATAAAGTTACTAAATGAGAGACATGTTGCAGCTGTTGACTA  850

seq1  GCTGTTTCCCAGAGTCTTTGTGTGATGTGGGGAAGACAGCCAGGTTTAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCCCAGAGTCTTTGTGTGATGTGGGGAAGACAGCCAGGTTTAGC  900

seq1  ATGAACCTCAGGCTTTGGGAATTGGGTGGGGAAATATGATGAAAAGGAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTCAGGCTTTGGGAATTGGGTGGGGAAATATGATGAAAAGGAAT  950

seq1  GAGAAACAGAGGAAGAAATTTTGGCTTGGGAAACTTGGAATTC  988
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAGAGGAAGAAATTTTGGCTTGGGAAACTTGGAATTC  993

seq1: chr13_22337989_22339117
seq2: B6Ng01-233B19.g_65_1199

seq1  GAATTCCTAAAATTATGTCATTATTTTTTAAGCTCTTTTAAAATGGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAATTATGTCATTATTTTTTAAGCTCTTTTAAAATGGGACT  50

seq1  GCTATTAGGTCCTTTCTGATAGTCAAAACTTCAATGAATTCTTGGCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAGGTCCTTTCTGATAGTCAAAACTTCAATGAATTCTTGGCCAGT  100

seq1  CCCTAAGTTTCACCAGTAATTGCTTCTGAGATAATAAACAATTATTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGTTTCACCAGTAATTGCTTCTGAGATAATAAACAATTATTCTAT  150

seq1  TACTTAGAGCACATTCCAAAAGATTGTAAAACCATTAACCAAATGTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAGCACATTCCAAAAGATTGTAAAACCATTAACCAAATGTCTTA  200

seq1  AAAGGGGAATTAATAATTTATTACAGGTGGTAGAACAGAATATAAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGAATTAATAATTTATTACAGGTGGTAGAACAGAATATAAAGCAT  250

seq1  TTACTGGATTTATCTATATAAATTTCAGTCATAGCTTAGTTATGGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGATTTATCTATATAAATTTCAGTCATAGCTTAGTTATGGTTTTT  300

seq1  AATTGTTCAATTTAATTTAAATTGTTCAATTTATGATTTGAATTTATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCAATTTAATTTAAATTGTTCAATTTATGATTTGAATTTATGTG  350

seq1  TAAACCTGTGATAAACTTTTTACCATGTGATCATGTATTCGGAAAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGTGATAAACTTTTTACCATGTGATCATGTATTCGGAAAGATGT  400

seq1  ATAAGTGCTGAGTACAAGAGAAGAGGGGCACAGCTCCTTATCCCCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGCTGAGTACAAGAGAAGAGGGGCACAGCTCCTTATCCCCTTTTC  450

seq1  TTAGCAATTCTCCTTGTTCCTACTTTTCTTGGCATTATTCTCCTTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATTCTCCTTGTTCCTACTTTTCTTGGCATTATTCTCCTTATGTT  500

seq1  CCTCTTCTTAGCACTCCTTATCCTCTTTTTCTTAGATCCCACCTATTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTAGCACTCCTTATCCTCTTTTTCTTAGATCCCACCTATTCCC  550

seq1  TTTTCCTAGATCCCTTATCTCCCTTTTCTTATGAGCCTGTTTCCCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAGATCCCTTATCTCCCTTTTCTTATGAGCCTGTTTCCCCTTTT  600

seq1  TTCTTCGAAGCTTTCATAGGAAACTTTTTACAACTTAGAGATAAATACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCGAAGCTTTCATAGGAAACTTTTTACAACTTAGAGATAAATACTA  650

seq1  AAATCACTTTCAAAAGTGTCCCTTTTTCTTTTCCATTTTTTATTAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTTTCAAAAGTGTCCCTTTTTCTTTTCCATTTTTTATTAGGTAT  700

seq1  TTAGCTCATTTATATTTCCAATGCTATACCAAAAGTCCCCCATACCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCATTTATATTTCCAATGCTATACCAAAAGTCCCCCATACCCACC  750

seq1  CACCCCCACTCCCCTATCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACTCCCCTATCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCC  800

seq1  CCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCA  850

seq1  GTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGAC-AAG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAAG  900

seq1  AGCTCCGGGGTACTGCTTAGTTCATATTGTTGTTCCACCTATAGGGTTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGGGGTACTGCTTAGTTCATATTGTTGTTCCACCTATAGGGTTGC  950

seq1  AGTTCCCTTTAGTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTTTAGTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGGCC  1000

seq1  CTGTGGTCCATTCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA  1049
      |||| |||||||| |||||||||||||||||| |||||||||||||||||
seq2  CTGT-GTCCATTC-ATAGCTGACTGTGAGCAT-CACTTCTGTGTTTGCTA  1047

seq1  GGCCCTGG-CATAGTCTC-ACAAGAGACAGCTA-TATCTGGG-TCCTTTC  1095
      |||||||| ||||||||| |||||||||||| | |||||||| ||||| |
seq2  GGCCCTGGCCATAGTCTCAACAAGAGACAGCCATTATCTGGGTTCCTTCC  1097

seq1  AGCAAAATCTTG-CTAGTG--TATGCAAT---GGTGTCAG  1129
      |||  ||||||| ||  ||  ||||||||   | ||||||
seq2  AGC--AATCTTGTCTGATGGTTATGCAATTGGGTTGTCAG  1135