BAC Information

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BAC

Clone NameB6Ng01-234B16
Chromosome13 (Build37)
Map Location 46,638,506 - 46,639,650
singlet/doubletsinglet
Overlap geneCap2
Upstream geneGmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24
Downstream geneC78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234B16.bB6Ng01-234B16.g
ACCGA045960GA045961
length1,1571,204
definitionB6Ng01-234B16.b B6Ng01-234B16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggaattcttgtcttgctttcttaagctgcctaagagccagtttttcaact
gttccctatctacagccacaaaacaaaacaggagcaaagagatagaggga
gctagctaaaagattgtcagagtgttgataaattcagtgtgtgtgtacgt
gtgtatatgtgtgtgtgcctgtgtagagtataggtgtgtgtgtgtatgtt
aaacttctacagagatacaaaaatctaactctctctctttctctttctct
gtttctctctctctctcaatactttattgctaatttatgccttaaaaatc
tggccttggtcatttatttctgactgctagtctagactcggcttaattca
aatcatcagctccagcaaatcaactcatccgctgattaaattacatatca
ataatttgattcattcacctagatattaatttttatgctattgtttggca
aacgcttgttactcatttcttgtggccatagttctggaaactgagaggtt
gggagaaaactatttgtttcttgaatcttgcaataacccctagcattcag
ccagtgggcctgaacaatctctaactaaagtagctaaaactcaagtattc
gtcaagaggcctaatggctccggtctgcactcccagcgcttagggggcca
aggcaggagatttgtcatgagtttaaggccagcctgtgttacagagtaag
gcccatcctcaaagagtttagtgaaaagggaacacatttacccatggacc
acacatgagagagaaattcttagttcattgaacatcctgttcatgagtaa
ggtattatatatgtgatgttttaaaaggatttgacttacactatgttaaa
aacataatttatacataaaacgtatttatgaatacacatgtgaactgtca
ggttttaaaaacaatccaattttttgtttaccctactatttaattacact
agaaagggaaaaatatagtgaagatgagaggcaaagtttttgttcattgc
ttttgtgcacggtaacagaatcggcagaacacttctcttaaaatcaaaga
atcatgacttggcacccacgtgtttgacagacactgtgttgtacttgtag
taaccaattatgcattagaaaggaatttttttggaaaacggtgtgtataa
ttttcat
gaattcaatgaaaatgaaggcatagcatacccaaacttatgggacacaat
gaaagcaatgctaagaggaaaattcatagcactaggagcagtcattaaaa
gtctcccagccaaaactaagcctaggaccagatggctttagtgcagaatt
ctaccagaccatcaaagaaatctaataccaatactcctcaaactattcca
caaaaaagaaacagacggaacactacctaattcattctatgaagccacag
ttactctgatacctaaactacacaaagacccaacaatgaaagagaacttc
agaataattttgtttataaatattgatgcaaaaatactcagtaaaattct
tgcaaattgaatccaagaacacatcaaaacaatcattcaccacgataaag
taggctttgtcccagggatgcaggaatggttcaatatatggaaatccatc
aatgtaatccactatataaacaaactcaaaggttaaaaaaattataggat
catctcattagatgctggagaagtctttgacaaaatacaacaccccttca
ggttaaagatcttggaatgatcaggaaatcaaggctcatacctaaacata
ataaaagcaatattctgcaaaccaacagccaacattaaattaaatggaga
gaaacttgaagcaatcccatcaaaatcagggacaaaacaagactgtccac
tctctccctatttattcaatatagtactcaaagttctaactagagcaatt
agaacaacaaaaggaaatcaaagagatacaaattggaaaggaagaattct
aggtatcactatttgcatatgatatgacagtacacataagcaactgcaaa
aattctactagagaactcctacacctgataaacaacttcaacaaagtggc
aaaattataaaattaaattcaaacaatcagtagccttcctctatacaaaa
gatcaacaaggctgagaaagaaattagggaaacaacaaccttcatgatat
cataaataatataaaatgtcttggtggtaactctaacaacaaaataaaaa
gatctgtatgacagaacttcaagtccttgaagaaggattcaaagaaggat
ctcaaaaggatgggaaagatcgccatcctcaatggattcaatggataatt
atagggtaacatccccaatccaaaattcccgaaacaagtgaaattctttc
accg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46638506_46639650
seq2: B6Ng01-234B16.b_47_1202 (reverse)

seq1  ATGAAA--TATACACACCGTTCT-CAAAAAAATTCC-TCATAATGCCATA  46
      ||||||  ||||||||||||| | |||||||||||| |  ||||| ||||
seq2  ATGAAAATTATACACACCGTTTTCCAAAAAAATTCCTTTCTAATG-CATA  49

seq1  TTTGGTACCTACAAG-AC-ACACAGTGTCTGTCAAACACGTGGGTGCCCA  94
       |||||  ||||||| || ||||||||||||||||||||||||||||| |
seq2  ATTGGTTACTACAAGTACAACACAGTGTCTGTCAAACACGTGGGTGCCAA  99

seq1  GTCCATGAATCTTTGATTTTAAGAGAAGTG-TCTGCCGA-TCTGTTACCG  142
      || ||||| ||||||||||||||||||||| |||||||| ||||||||||
seq2  GT-CATGATTCTTTGATTTTAAGAGAAGTGTTCTGCCGATTCTGTTACCG  148

seq1  TGCAC-ATAGCAATG---ACAAACTTTGCCTCTCATCTTCACTATATTTT  188
      ||||| | |||||||   | ||||||||||||||||||||||||||||||
seq2  TGCACAAAAGCAATGAACAAAAACTTTGCCTCTCATCTTCACTATATTTT  198

seq1  TCCCTTTCTAGTTGTAATTAAATAGTA-GGTTAACAAAAAATTGGATTGT  237
      ||||||||||| ||||||||||||||| ||| ||||||||||||||||||
seq2  TCCCTTTCTAG-TGTAATTAAATAGTAGGGTAAACAAAAAATTGGATTGT  247

seq1  TTTTAAAACCTGACAGTTCACATGTGTATTCATAAATACGTTTTATGTAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACCTGACAGTTCACATGTGTATTCATAAATACGTTTTATGTAT  297

seq1  AAA-TATGTTTTTAACATAGTGTAAGTCAAATCCTTTTAAAACATCACAT  336
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGTTTTTAACATAGTGTAAGTCAAATCCTTTTAAAACATCACAT  347

seq1  ATATAATACCTTACTCATTGAACAGGATGTTCAATGAACTAAGAATTTCT  386
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATATAATACCTTACTCA-TGAACAGGATGTTCAATGAACTAAGAATTTCT  396

seq1  CTCTCATGTGTGGTCCATGGGTAAATGTGTTCCC-TTTCACTAAACTCTT  435
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTCATGTGTGGTCCATGGGTAAATGTGTTCCCTTTTCACTAAACTCTT  446

seq1  TGAGGATGGGCCTTACTCTGTAACACAGGCTGGCCTTAAACTCATGACAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGGGCCTTACTCTGTAACACAGGCTGGCCTTAAACTCATGACAA  496

seq1  ATCTCCTGCCTTGGCCCCCTAAGCGCTGGGAGTGCAGACCGGAGCCATTA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGCCTTGGCCCCCTAAGCGCTGGGAGTGCAGACCGGAGCCATTA  546

seq1  GGCCTCTTGACGAATACTTGAGTTTTAGCTACTTTAGTTAGAGATTGTTC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTGACGAATACTTGAGTTTTAGCTACTTTAGTTAGAGATTGTTC  596

seq1  AGGCCCACTGGCTGAATGCTAGGGGTTATTGCAAGATTCAAGAAACAAAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCACTGGCTGAATGCTAGGGGTTATTGCAAGATTCAAGAAACAAAT  646

seq1  AGTTTTCTCCCAACCTCTCAGTTTCCAGAACTATGGCCACAAGAAATGAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTCCCAACCTCTCAGTTTCCAGAACTATGGCCACAAGAAATGAG  696

seq1  TAACAAGCGTTTGCCAAACAATAGCATAAAAATTAATATCTAGGTGAATG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGCGTTTGCCAAACAATAGCATAAAAATTAATATCTAGGTGAATG  746

seq1  AATCAAATTATTGATATGTAATTTAATCAGCGGATGAGTTGATTTGCTGG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATTATTGATATGTAATTTAATCAGCGGATGAGTTGATTTGCTGG  796

seq1  AGCTGATGATTTGAATTAAGCCGAGTCTAGACTAGCAGTCAGAAATAAAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGATTTGAATTAAGCCGAGTCTAGACTAGCAGTCAGAAATAAAT  846

seq1  GACCAAGGCCAGATTTTTAAGGCATAAATTAGCAATAAAGTATTGAGAGA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGCCAGATTTTTAAGGCATAAATTAGCAATAAAGTATTGAGAGA  896

seq1  GAGAGAGAAACAGAGAAAGAGAAAGAGAGAGAGTTAGATTTTTGTATCTC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAACAGAGAAAGAGAAAGAGAGAGAGTTAGATTTTTGTATCTC  946

seq1  TGTAGAAGTTTAACATACACACACACACCTATACTCTACACAGGCACACA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGTTTAACATACACACACACACCTATACTCTACACAGGCACACA  996

seq1  CACATATACACACGTACACACACACTGAATTTATCAACACTCTGACAATC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACACACGTACACACACACTGAATTTATCAACACTCTGACAATC  1046

seq1  TTTTAGCTAGCTCCCTCTATCTCTTTGCTCCTGTTTTGTTTTGTGGCTGT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTAGCTCCCTCTATCTCTTTGCTCCTGTTTTGTTTTGTGGCTGT  1096

seq1  AGATAGGGAACAGTTGAAAAACTGGCTCTTAGGCAGCTTAAGAAAGCAAG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGGAACAGTTGAAAAACTGGCTCTTAGGCAGCTTAAGAAAGCAAG  1146

seq1  ACAAGAATTC  1145
      ||||||||||
seq2  ACAAGAATTC  1156