BAC Information

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BAC

Clone NameB6Ng01-234N23
Chromosome13 (Build37)
Map Location 27,646,911 - 27,803,032
singlet/doubletdoublet
Overlap genePrl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1
Upstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8
Downstream genePrl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234N23.bB6Ng01-234N23.g
ACCGA046503GA046504
length1,1351,018
definitionB6Ng01-234N23.b B6Ng01-234N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,801,880 - 27,803,032)(27,646,911 - 27,647,847)
sequence
gaattctgagcctcaattgaatcaagcacacacttttagtcatatgctcc
tggcgacctgtattgttatcactttcacacagtcctttccttcattttca
catttctcttaaagtatctattaaatcctgctttaagtgttgttctcctc
agcactagattagttaaaaagacagcaacatagcaaacattttgaaatca
gttatgaggtacatatatatttctgacctattcctaagggtaaattttca
cttatggtttctatgcattcaatgagctccattgtccttcaggtatactt
gttgacattgctctgttctgttagaggcattggtgttgtaggctgaggaa
ccatatttataaatgacaggtcatcttcaaggtacctttctattaatatc
ctaaactttataatgagttttttttaaaatataattttttcagcattcta
ttctctggtgtcataaatatgagttaagtgacttgcagttgaaactggta
gtatctgtctttctgattcaagactagtaggcagccccaaagtctcaaga
aagccttattagggtttcatggagaaacaaaatagtttttggtaaggaat
ataatgccttaccaaaagggctgatgatagatttcagacaaaaaaaaaaa
aaaaccaaaaaacaaacaaacaaacaaaaaaaaacagaacatgttcaata
atatagttcattataaattatttacataaactgtttcatttttgcaaact
acaggtgaccagtctaacttatacactgctacatcattttcatctccaga
aaaaaaatttttttctccattaggatagcacatagctgtgttcgttaaag
ttttttgattaaaagccacatgtaaataatgctctatgtttcatttacct
tactatggttgttcaacaactgtttcatagtttgaagagtttttgaaaat
ggtgctcatatgctgctagcctggaaagagcctctgaaacatctagtgac
agaactcagtgctttgccagatgcccttataggatcctatcaagccgagc
cattgagcaaaacaagacttctagagtacatcataagataaatctaaagt
gagtattcttacctctcatttgtctttatgaatga
gaattcaaacctttcatagcagtcacaaataagattaaaaaaaaaacaaa
caaacaaaaaaaaccttgatgtaactctaactaaacaagtgaaagaccca
tatgacaagaagttcaagtctatgaagaaagaaattgaggaagatatcag
aagataggaagatctcccatgctcatgaattgataggattagcatagtag
aaatggccaaaagaattgttgaccttgaaagtgcaatgctcagcttacat
agaaaaacagaaaagcccacgatagctaaatagatccactacagtaaatg
aacttctagaggtatcaccatctctgattgcaagctacattgtgtgccat
tggatcccttttccctggctggtctgcctggatgcacctcagtggaagag
ggtgcacttagtcctattgacactaaatgtctcagggcagagtggtaccc
agtggaggtttctccatctctgagaagaaggggagaagataatggaggga
gaaaaatgtaaagtgggactgagaggagaggaggagtagactgtcattgg
gatgcaaagttaataaatatatattaattggaaatgacaataatgtgatt
tctatcccttggtttctagctgctatcctaactttgaggttttatgagta
gtctttatataccttaattaaaatagcttaatcatggtcaacaaccatct
tatcatatgctaagctatgcttacatgtagtgtattatatatttgtgcct
ctgtgctcatcagaaaaaaatggtttgtaattttgtgatttttaatatag
tttttatttttctgagattacaatataattagattatattttccttttac
ttcagcactacagccccacttcttttatctctcatggccactctttttgt
tattctattgtatttggaattgtggtcatgctggctctataaaatatatt
tgggaatttatgccctttttgcatgtttaaaacttttgtagaacttttaa
tattagcaatttgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27801880_27803032
seq2: B6Ng01-234N23.b_48_1182 (reverse)

seq1  TCATTCATAAAAGACAAAATTGAAGAGTAAGAAAATTACTCACCTTAGAT  50
      |||||||| |||||||||  |||   |||||||   ||||||| ||||||
seq2  TCATTCAT-AAAGACAAA--TGAGAGGTAAGAA---TACTCACTTTAGAT  44

seq1  ATTATTCTTATGATGTACTCTAGAAGGTCTTTGTTTTTTGCCTCAATGGC  100
       ||| |||||||||||||||||||| ||| |||||||    |||||||||
seq2  -TTA-TCTTATGATGTACTCTAGAA-GTC-TTGTTTT---GCTCAATGGC  87

seq1  TTCGGCCTTTGATAGGATCCTATAAGGGCATTCTGGCAAAGCACTGAGTT  150
       |||||  |||||||||||||||||||||| |||||||||||||||||||
seq2  -TCGGC--TTGATAGGATCCTATAAGGGCA-TCTGGCAAAGCACTGAGTT  133

seq1  CTGTCACTAGATGTTTCAGAGGCTCTTTCCAGGCTAGCAGCATATGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGTCACTAGATGTTTCAGAGGCTCTTTCCAGGCTAGCAGCATAT-GAGC  182

seq1  ACCATTTTCAAAAACTCTTCAAACTATGAAACAGTTGTTGAACAACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTCAAAAACTCTTCAAACTATGAAACAGTTGTTGAACAACCATA  232

seq1  GTAAGGTAAATGAAACATAGAGCATTATTTACATGTGGCTTTTAATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTAAATGAAACATAGAGCATTATTTACATGTGGCTTTTAATCAAA  282

seq1  AAACTTTAACGAACACAGCTATGTGCTATCCTAATGGAGAAAAAAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTAACGAACACAGCTATGTGCTATCCTAATGGAGAAAAAAATTTT  332

seq1  TTTTCTGGAGATGAAAATGATGTAGCAGTGTATAAGTTAGACTGGTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGAGATGAAAATGATGTAGCAGTGTATAAGTTAGACTGGTCACC  382

seq1  TGTAGTTTGCAAAAATGAAACAGTTTATGTAAATAATTTATAATGAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTGCAAAAATGAAACAGTTTATGTAAATAATTTATAATGAACTA  432

seq1  TATTATTGAACATGTTCTGTTTTTTTTTGTTTGTTTGTTTGTTTTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGAACATGTTCTGTTTTTTTTTGTTTGTTTGTTTGTTTTTTGGT  482

seq1  TTTTTTTTTTTTTTGTCTGAAATCTATCATCAGCCCTTTTGGTAAGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGTCTGAAATCTATCATCAGCCCTTTTGGTAAGGCAT  532

seq1  TATATTCCTTACCAAAAACTATTTTGTTTCTCCATGAAACCCTAATAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCTTACCAAAAACTATTTTGTTTCTCCATGAAACCCTAATAAGG  582

seq1  CTTTCTTGAGACTTTGGGGCTGCCTACTAGTCTTGAATCAGAAAGACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGAGACTTTGGGGCTGCCTACTAGTCTTGAATCAGAAAGACAGA  632

seq1  TACTACCAGTTTCAACTGCAAGTCACTTAACTCATATTTATGACACCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCAGTTTCAACTGCAAGTCACTTAACTCATATTTATGACACCAGA  682

seq1  GAATAGAATGCTGAAAAAATTATATTTTAAAAAAAACTCATTATAAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAATGCTGAAAAAATTATATTTTAAAAAAAACTCATTATAAAGTT  732

seq1  TAGGATATTAATAGAAAGGTACCTTGAAGATGACCTGTCATTTATAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATATTAATAGAAAGGTACCTTGAAGATGACCTGTCATTTATAAATA  782

seq1  TGGTTCCTCAGCCTACAACACCAATGCCTCTAACAGAACAGAGCAATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTCAGCCTACAACACCAATGCCTCTAACAGAACAGAGCAATGTC  832

seq1  AACAAGTATACCTGAAGGACAATGGAGCTCATTGAATGCATAGAAACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTATACCTGAAGGACAATGGAGCTCATTGAATGCATAGAAACCAT  882

seq1  AAGTGAAAATTTACCCTTAGGAATAGGTCAGAAATATATATGTACCTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAATTTACCCTTAGGAATAGGTCAGAAATATATATGTACCTCAT  932

seq1  AACTGATTTCAAAATGTTTGCTATGTTGCTGTCTTTTTAACTAATCTAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTCAAAATGTTTGCTATGTTGCTGTCTTTTTAACTAATCTAGT  982

seq1  GCTGAGGAGAACAACACTTAAAGCAGGATTTAATAGATACTTTAAGAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGAGAACAACACTTAAAGCAGGATTTAATAGATACTTTAAGAGAA  1032

seq1  ATGTGAAAATGAAGGAAAGGACTGTGTGAAAGTGATAACAATACAGGTCG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAATGAAGGAAAGGACTGTGTGAAAGTGATAACAATACAGGTCG  1082

seq1  CCAGGAGCATATGACTAAAAGTGTGTGCTTGATTCAATTGAGGCTCAGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCATATGACTAAAAGTGTGTGCTTGATTCAATTGAGGCTCAGAA  1132

seq1  TTC  1153
      |||
seq2  TTC  1135

seq1: chr13_27646911_27647847
seq2: B6Ng01-234N23.g_141_1082

seq1  CTAACTAAACAAGTGAAAGACCCATATGACAAGAAGTTCAAGTCTATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAAACAAGTGAAAGACCCATATGACAAGAAGTTCAAGTCTATGAA  50

seq1  GAAAGAAATTGAGGAAGATATCAGAAGATAGGAAGATCTCCCATGCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATTGAGGAAGATATCAGAAGATAGGAAGATCTCCCATGCTCAT  100

seq1  GAATTGATAGGATTAGCATAGTAGAAATGGCCAAAAGAATTGTTGACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATAGGATTAGCATAGTAGAAATGGCCAAAAGAATTGTTGACCTT  150

seq1  GAAAGTGCAATGCTCAGCTTACATAGAAAAACAGAAAAGCCCACGATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCAATGCTCAGCTTACATAGAAAAACAGAAAAGCCCACGATAGC  200

seq1  TAAATAGATCCACTACAGTAAATGAACTTCTAGAGGTATCACCATCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGATCCACTACAGTAAATGAACTTCTAGAGGTATCACCATCTCTG  250

seq1  ATTGCAAGCTACATTGTGTGCCATTGGATCCCTTTTCCCTGGCTGGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGCTACATTGTGTGCCATTGGATCCCTTTTCCCTGGCTGGTCTG  300

seq1  CCTGGATGCACCTCAGTGGAAGAGGGTGCACTTAGTCCTATTGACACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATGCACCTCAGTGGAAGAGGGTGCACTTAGTCCTATTGACACTAA  350

seq1  ATGTCTCAGGGCAGAGTGGTACCCAGTGGAGGTTTCTCCATCTCTGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCAGGGCAGAGTGGTACCCAGTGGAGGTTTCTCCATCTCTGAGAA  400

seq1  GAAGGGGAGAAGATAATGGAGGGAGAAAAATGTAAAGTGGGACTGAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAGAAGATAATGGAGGGAGAAAAATGTAAAGTGGGACTGAGAGG  450

seq1  AGAGGAGGAGTAGACTGTCATTGGGATGCAAAGTTAATAAATATATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGAGTAGACTGTCATTGGGATGCAAAGTTAATAAATATATATTA  500

seq1  ATTGGAAATGACAATAATGTGATTTCTATCCCTTGGTTTCTAGCTGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAATGACAATAATGTGATTTCTATCCCTTGGTTTCTAGCTGCTAT  550

seq1  CCTAACTTTGAGGTTTTATGAGTAGTCTTTATATACCTTAATTAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTTGAGGTTTTATGAGTAGTCTTTATATACCTTAATTAAAATAG  600

seq1  CTTAATCATGGTCAACAACCATCTTATCATATGCTAAGCTATGCTTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCATGGTCAACAACCATCTTATCATATGCTAAGCTATGCTTACAT  650

seq1  GTAGTGTATTATATATTTGTGCCTCTGTGCTCATCAGAAAAAAATGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTATTATATATTTGTGCCTCTGTGCTCATCAGAAAAAAATGGTTT  700

seq1  GTAATTTTGTGATTTTTAATATAGTTTTTATTTTTCTGAGATTACAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTGTGATTTTTAATATAGTTTTTATTTTTCTGAGATTACAATAT  750

seq1  AATTAGATTATATTT--CCTTTACTTCAGCACTACAGCCCCAC-TCTTTT  797
      |||||||||||||||  | |||||||||||||||||||||||| ||||||
seq2  AATTAGATTATATTTTCCTTTTACTTCAGCACTACAGCCCCACTTCTTTT  800

seq1  ATCTCTCATGGCCACTCTTTTTGTTATTCTATTTGTATTTGGAATTGTGG  847
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCTCTCATGGCCACTCTTTTTGTTATTCTA-TTGTATTTGGAATTGTGG  849

seq1  TCATGCTGGCTCTATAAAATATATTT-GGAATTTATGCCCTTTTTGCATG  896
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCATGCTGGCTCTATAAAATATATTTGGGAATTTATGCCCTTTTTGCATG  899

seq1  TTTTAAAACTTTGTAGAACTTTT-ATATTAGC-ATTTGGGGGG  937
      ||| |||  |||||||||||||| |||||||| ||||||||||
seq2  TTTAAAACTTTTGTAGAACTTTTAATATTAGCAATTTGGGGGG  942