BAC Information

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BAC

Clone NameB6Ng01-236A24
Chromosome13 (Build37)
Map Location 66,557,752 - 66,600,914
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik
Downstream geneC330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236A24.bB6Ng01-236A24.g
ACCGA047376GA047377
length1,1091,164
definitionB6Ng01-236A24.b B6Ng01-236A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,557,752 - 66,558,858)(66,599,626 - 66,600,914)
sequence
gaattccaggttcttggataacccacttgccacttttgttgtggcaggaa
agaagatgttgatactatgaaaaagagaactaggaaggcagatgagagaa
aagagagaagctaattttacatagcacagcaaattctttgccctaactct
gagtctaaccctaaccctgatatttcttctttatgtaatagagatcctag
agattcaatgggatataagaataatagtggccacctcaagcctacccctg
agcctacccctgatttatcctaaacctttaaccctatcttaaacctcaca
ccttaatttcctaaccaccctaaccctaatcctaaccacccttatcctaa
tcctaaccataaccctctgatcgcctaatcctaactccagtcctgcttac
tgtgggggatatctcttaatatataatatttcttaattatacctttgaat
tgagaaactcttgcttaatctcgatcttttgagatgttcagatccacctt
taatctaggcaatagattcttttggcatcccgcatatatgaaagacattg
aacagggtagttctttcactttttttatacgtgccattcttttttataaa
acaaaggtgatttgcttgtgtggtttttctaactagcattaaaaagtact
tatttctttagaattctggtacatcagctataataacccgcagcaggaaa
tcaaccagtccttgatttttctagtttctgttggctgagagcctttattg
ggacattctattaaatttcctttctatctacatagagagattcattctat
atttgagatatgtttatctagagaacctgtactaatccaactgtggtttt
tctctatttcgccactgatgaagatgtgctgtctattaagagggcacaaa
cagtgtttcccttatgtttctgggcttttctcccaggggttatttaatgc
ctatcattggtgaaaggttgctggtggtttcctgagccagcatggaagca
caaatcaaaactctcgtttcctaaaaatccctctttaatgtaattgccta
ggcattctccactcagtgggtcagattgaatacttacactgcacagggag
taatgggct
gaattctaaacataataaaaaaataaatcttagggaaaagaaaagaaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaggaagaaaattccttatggaag
tttcttatagatttgggaattttgactggatgagcgatcctgctttcatt
tctccttccaggcgtcttcaagagctgagggtctgctctcagggccgctc
agagggagacagagatgaaatgaggtcaggagctgtaatgagacgagctc
atcactagtgggcaaccttcccgggatgggaactggaagtagcagcccca
ccccagtgcctccagcgcctgcagcaacttagggtcatgggggcctgggc
tcagggacagagagctcgtgcacgttcctatgtgtgtggcagggcggggt
ccatgggacaggctgggaggcagggcctgaaggcgagggcaatgaccccg
agctctcagcaggatcccagcagcaggcatggccatgttggagagcttag
ggttcacgaggggtcatgcgttgtcacaccctactctgtcctccttctgg
tcggtccagccaatgctcaggccctccccttaaccccctccctcctctct
cttccccctcaggcttgggtcaggcagctgtcatggggctgggcgagagg
gcgaggctggagggtggccagagttcacccggggtctcctggatggcttg
gtgatcccagtccctggtggcagtgaccaacaaccacctatgtgatccct
gacctatgacttggataccgactttacacctaacctggatatcatatgta
aaccccaacctttgatcccatcatgacctctatattgccctgtgccctgg
atgacactgtcctgtaaccctgacatgacctcgacactgtccacctcact
ccaacccagcctcagccctgcccactaggcactccaggttctgaccccta
gcccactacatatgcacagtgatcatgtgacatcgggatccgccccctcc
ccagcccaatgttcacatgccttggccagacctccagagtgggggtgggg
ttactcacccacctcgttgctccactaccatcaggctcgctcagttgtga
gctgaatgggcgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66557752_66558858
seq2: B6Ng01-236A24.b_45_1153

seq1  GAATTCCAGGTTCTTGGATAACCCACTTGCCACTTTCGTTGTGGCAGGAA  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAATTCCAGGTTCTTGGATAACCCACTTGCCACTTTTGTTGTGGCAGGAA  50

seq1  AGAAGATGTTGATACTATGAAAAAGAGGACTAGGAAGGCAGATGAGAGAA  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAAGATGTTGATACTATGAAAAAGAGAACTAGGAAGGCAGATGAGAGAA  100

seq1  AAGAGAGAAGCTAATTTTACATAGCACAGCAAATTCTTTGCCCTAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAAGCTAATTTTACATAGCACAGCAAATTCTTTGCCCTAACTCT  150

seq1  GAGTCTAACCCTAACCCTGATATTTCTTCTTTATGTAATAGAGATACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGTCTAACCCTAACCCTGATATTTCTTCTTTATGTAATAGAGATCCTAG  200

seq1  AGATTCAATTGGATATAAGAATAATAGTGGCCACCTCAAGCCTACCCCTG  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAATGGGATATAAGAATAATAGTGGCCACCTCAAGCCTACCCCTG  250

seq1  AGCCTAACCCTGATTTATCCTAAACCTTTAACCCTATCTTAAACCTCACA  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACCCCTGATTTATCCTAAACCTTTAACCCTATCTTAAACCTCACA  300

seq1  CCTTAATTTCCTAACCACCCTAACCCTAATCCTAACCACCCTTATCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTTCCTAACCACCCTAACCCTAATCCTAACCACCCTTATCCTAA  350

seq1  TCCTAACCATAACCCTCTGATCGCCTAATCCTAACTCCAGTCCTGCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACCATAACCCTCTGATCGCCTAATCCTAACTCCAGTCCTGCTTAC  400

seq1  TGTGGGGGATATCTCTTAATATATAATATTTCTTAATTATACCTTTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGGATATCTCTTAATATATAATATTTCTTAATTATACCTTTGAAT  450

seq1  TGAGAAACTCTTGCTTAATCTCGATCTTTTGAGATGTTCAGATCCACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACTCTTGCTTAATCTCGATCTTTTGAGATGTTCAGATCCACCTT  500

seq1  TAATCTAGGCAATAGATTCTTTTGGCATCCCGCATATATGAAAGACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGGCAATAGATTCTTTTGGCATCCCGCATATATGAAAGACATTG  550

seq1  AACAGGGTAGTTCTTTCACTTTTTTTATACGTGCCATTCTTTTTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTAGTTCTTTCACTTTTTTTATACGTGCCATTCTTTTTTATAAA  600

seq1  ACAAAGGTGATTTGCTTGTGTGATTTTTCTAACTAGCATTAAAAAGTACT  650
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACAAAGGTGATTTGCTTGTGTGGTTTTTCTAACTAGCATTAAAAAGTACT  650

seq1  TATTTCTTTAGAATTCTGGTACATCAGCTATAATAACCCACAGCAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATTTCTTTAGAATTCTGGTACATCAGCTATAATAACCCGCAGCAGGAAA  700

seq1  TCAACCAGTCCTTGATTTTTCTAATTTCTGTTGGCTGAGAGCCTTTATTG  750
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAACCAGTCCTTGATTTTTCTAGTTTCTGTTGGCTGAGAGCCTTTATTG  750

seq1  GGACATTCTATTAAATTTCCTTTCTATCTACATAGAGAGATTCATTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCTATTAAATTTCCTTTCTATCTACATAGAGAGATTCATTCTAT  800

seq1  ATTTGAGATATGTTTATCTAGAGAACCTGTACTAATCCAACTGTGGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGATATGTTTATCTAGAGAACCTGTACTAATCCAACTGTGGTTTT  850

seq1  TCTCTATTTCGCCACTGATGAAGATGTGCTGTCTATTAAGAGGGCAC-AA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTCTATTTCGCCACTGATGAAGATGTGCTGTCTATTAAGAGGGCACAAA  900

seq1  CAGTGTTTCCCTTATGTTTCT-GGCTTTTCTCCCA-GGGTTATTTAATGC  947
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  CAGTGTTTCCCTTATGTTTCTGGGCTTTTCTCCCAGGGGTTATTTAATGC  950

seq1  CTATCATTGGTGAAAGGGTGCT-GTGGTTTCCCTGAGCCCAGCACGAAGC  996
      ||||||||||||||||| |||| ||||||| |||||| |||||| | |  
seq2  CTATCATTGGTGAAAGGTTGCTGGTGGTTT-CCTGAG-CCAGCATGGAAG  998

seq1  CACAAATCAAAACTCTCGTTTCCTAAAAATCCCTCTTTAATGTTAATTGC  1046
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACAAATCAAAACTCTCGTTTCCTAAAAATCCCTCTTTAATG-TAATTGC  1047

seq1  CTAGGCATCCTTCCACTCAGTGGGTCAGATTG-ATACCTACACTGCACA-  1094
      |||||||| | ||||||||||||||||||||| |||| ||||||||||| 
seq2  CTAGGCATTC-TCCACTCAGTGGGTCAGATTGAATACTTACACTGCACAG  1096

seq1  GGAGTAATGGGCT  1107
      |||||||||||||
seq2  GGAGTAATGGGCT  1109

seq1: chr13_66599626_66600914
seq2: B6Ng01-236A24.g_63_1226 (reverse)

seq1  GGCGCCCCATTCAGCTCACAACCTGAGCGAGGCCTTTTGATGATGATGGG  50
      |||| |||||||||||||||| ||||||||| |    ||||| |  ||| 
seq2  GGCG-CCCATTCAGCTCACAA-CTGAGCGAGCC----TGATGGTAGTGGA  44

seq1  ACACAGAG--TGGTGAGTGACCCCCACCCCCCAACTCCTGGGAAGTCTGG  98
       ||  |||   ||||||| | ||||||||||  ||||   ||| |||| |
seq2  GCAACGAGGTGGGTGAGT-AACCCCACCCCC--ACTC--TGGAGGTCT-G  88

seq1  GCCAAGGCATGTG-ACATTGGGCTGGGGGAGGGGGGCGGATCCTGATGTC  147
      ||||||||||||| ||||||||||||||   |||||||||||| ||||||
seq2  GCCAAGGCATGTGAACATTGGGCTGGGG--AGGGGGCGGATCCCGATGTC  136

seq1  ACCATGAATCACTGGTGCATATGGTAGGGGGCTAGGGGTCAGAACCTGGA  197
      | |||| |||||| |||||||| |||| ||||||||||||||||||||||
seq2  A-CATG-ATCACT-GTGCATAT-GTAGTGGGCTAGGGGTCAGAACCTGGA  182

seq1  GTGCCTAGTGGGCAGGACTGAGGCTGGGTTGGAGTGAGGTAGACAGTGTC  247
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  GTGCCTAGTGGGCAGGGCTGAGGCTGGGTTGGAGTGAGGTGGACAGTGTC  232

seq1  GAGGTCATGTCAGGGTTACAGGACAGTGTCATCCAGGGCACAGGGCAATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATGTCAGGGTTACAGGACAGTGTCATCCAGGGCACAGGGCAATA  282

seq1  TAGAGGTCATGATGGGATCAAAGGTTGGGGTTTACATATGATATCCAGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTCATGATGGGATCAAAGGTTGGGGTTTACATATGATATCCAGGT  332

seq1  TAGGTGTAAAGTCGGTGTCCAAGTCATAGGTCAGGGATCACATAGGTGGT  397
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGGTGTAAAGTCGGTATCCAAGTCATAGGTCAGGGATCACATAGGTGGT  382

seq1  TGTTGGTCACTGCCATCAGGGACTGGGATCACCAAGCCATCCAGGAGACC  447
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTTGGTCACTGCCACCAGGGACTGGGATCACCAAGCCATCCAGGAGACC  432

seq1  CGGGGTGAACTCTGGCCACCCTCCAGCCTCGCCCTCTTGCCCAGCCCGCA  497
      | ||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  CCGGGTGAACTCTGGCCACCCTCCAGCCTCGCCCTCTCGCCCAGCCC-CA  481

seq1  TGACAGCTGCCTGACCCAAGCCTGAGGGGGAAGAGAGAGGAGGGAGGGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTGCCTGACCCAAGCCTGAGGGGGAAGAGAGAGGAGGGAGGGGG  531

seq1  TTAAGGGGAGGGCCTGAGCATTGGCTGGACCGACCAGAAGGAGGACAGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGGAGGGCCTGAGCATTGGCTGGACCGACCAGAAGGAGGACAGAG  581

seq1  CAGGGTGTGACAACG----------CGTGACCCCTAAGCTCTCCAACATG  637
       ||||||||||||||          ||||| |||||||||||||||||||
seq2  TAGGGTGTGACAACGCATGACCCCTCGTGAACCCTAAGCTCTCCAACATG  631

seq1  GCCATGCCTGCTGCTGGGATCCTGCTGAGAGCTCGGGGTCATTGCCCTAG  687
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCATGCCTGCTGCTGGGATCCTGCTGAGAGCTCGGGGTCATTGCCCTCG  681

seq1  CCTTCAGGCCCTGCCTCCCAGCCTGTCCCATGGACCCCGCCCCGCCACAC  737
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTTCAGGCCCTGCCTCCCAGCCTGTCCCATGGACCCCGCCCTGCCACAC  731

seq1  ACATATGAACGTGCAGGAGCTCTCTGTCCTTGAGCCCGGACCCCCATGAC  787
      ||||| ||||||||| ||||||||||||| ||||||| | ||||||||||
seq2  ACATAGGAACGTGCACGAGCTCTCTGTCCCTGAGCCCAGGCCCCCATGAC  781

seq1  CCTAAGTTGCTGCAGGCACTGGAGGCACTGGGGTGGGGCTGCTACTTCCA  837
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTAAGTTGCTGCAGGCGCTGGAGGCACTGGGGTGGGGCTGCTACTTCCA  831

seq1  GTTCCCATCCCGGGAAGGTTGCCCACTAGTGATGAGCTCGTCTCATTACA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATCCCGGGAAGGTTGCCCACTAGTGATGAGCTCGTCTCATTACA  881

seq1  GCTCCTGACCTCACTTCATCTCTGTCTCCCTCTGAGCGGCCCTGAGAGCA  937
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGACCTCATTTCATCTCTGTCTCCCTCTGAGCGGCCCTGAGAGCA  931

seq1  GACCCTCAGCTCTTAAAGACGCCTGGAAGGAGAAATGGAAGCAGGATCGC  987
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  GACCCTCAGCTCTTGAAGACGCCTGGAAGGAGAAATGAAAGCAGGATCGC  981

seq1  TCATCCAGTCAAAATTCCCAAATCTATAAGAAACTTCCATAAGGAATTTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGTCAAAATTCCCAAATCTATAAGAAACTTCCATAAGGAATTTT  1031

seq1  CTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  1081

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  1137
      |||||||||||||||||||||||||||||||||||               
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT---------------  1116

seq1  TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  1187
                                                        
seq2  --------------------------------------------------  1116

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  1237
                                                        
seq2  --------------------------------------------------  1116

seq1  TTTCTTTCTTTCTTTTCCCTAATATTTATTTTTTTTATTATGTTTAGAAT  1287
      |||||   |||||||||||||| ||||| |||||||||||||||||||||
seq2  TTTCT---TTTCTTTTCCCTAAGATTTA-TTTTTTTATTATGTTTAGAAT  1162

seq1  TC  1289
      ||
seq2  TC  1164