BAC Information

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BAC

Clone NameB6Ng01-236B23
Chromosome13 (Build37)
Map Location 40,821,287 - 40,822,171
singlet/doubletsinglet
Overlap geneTcfap2a
Upstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894, LOC100039048
Downstream geneEG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236B23.bB6Ng01-236B23.g
ACCGA047418GA047419
length8851,187
definitionB6Ng01-236B23.b B6Ng01-236B23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgatacctgtgtggtaactctttgtggtgaaattggtcagtag
gagaaattaaccaaatgatcacatgaaagcaggaagccttgtgctcttct
caccctcccccacctttcaaggggaaaaaaaaatctttcaaaggaatttg
ggtcaggaaaagggttgttttcaattttctcattgctgccacagttaact
tttaataagaatgactgctaaatatttaagaaaatcaagtcgatggtgaa
aattacttaatcattaatatctcagtggggttttaaacttaacagtcttc
cctgtatggacaaggtctagctagaaataacagaaataaaagtattattc
cacactacatttactttatgggtttagggtgcaagcataaagggatcata
tttccccatatagttaaaacacaagaactgcagcagtagtcatttctgaa
catttctcaatttaattatacttaaatccagaagcactttaggcaagtta
caaatgagagcattgagtataataaaacctgtaataaagcaacttagtgc
catccacccggaatcatagcgatcagccacaattaacatgagcataaatc
caaggcagaatggaaaaggttcgaatcagtattattgttggacaaagact
agagaaggaagtaatagttttttaaatggcaatgcctgtgcttggtaacg
attgcgaaaccctctatctcagcagccctggtgctaatttgtaaacacag
ccagacattatattgcctgtcagtttctgcattagaaaacatgatttcat
tttactttctaatcacgtttggattctagcatatacgcatacccatccat
ctgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaat
acagaagtggatgctcacagtcagctaatggatggatcacaggtctccca
atgggaggagctagagaaagtaccacgagctaagggatcttcaccctata
ggtggaacaacattatgacctaaccagtacccctgagctcttgactctag
ctgcatatgttatcaaagatggcctagttcgcccatcactgaagaagagg
ctcattgaccccgtcagacttgtgtgtccctattacagggatcggcaagg
ttctaaagggggaggaagatgttggcgtcagcgtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40821287_40822171
seq2: B6Ng01-236B23.b_44_928 (reverse)

seq1  CACACACACACACACACACACACACTCTCACACAGATGGATGGGTATGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACTCTCACACAGATGGATGGGTATGCG  50

seq1  TATATGCTAGAATCCAAACGTGATTAGAAAGTAAAATGAAATCATGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTAGAATCCAAACGTGATTAGAAAGTAAAATGAAATCATGTTTT  100

seq1  CTAATGCAGAAACTGACAGGCAATATAATGTCTGGCTGTGTTTACAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCAGAAACTGACAGGCAATATAATGTCTGGCTGTGTTTACAAATT  150

seq1  AGCACCAGGGCTGCTGAGATAGAGGGTTTCGCAATCGTTACCAAGCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGGGCTGCTGAGATAGAGGGTTTCGCAATCGTTACCAAGCACAG  200

seq1  GCATTGCCATTTAAAAAACTATTACTTCCTTCTCTAGTCTTTGTCCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCCATTTAAAAAACTATTACTTCCTTCTCTAGTCTTTGTCCAACA  250

seq1  ATAATACTGATTCGAACCTTTTCCATTCTGCCTTGGATTTATGCTCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTGATTCGAACCTTTTCCATTCTGCCTTGGATTTATGCTCATGT  300

seq1  TAATTGTGGCTGATCGCTATGATTCCGGGTGGATGGCACTAAGTTGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTGGCTGATCGCTATGATTCCGGGTGGATGGCACTAAGTTGCTTT  350

seq1  ATTACAGGTTTTATTATACTCAATGCTCTCATTTGTAACTTGCCTAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGTTTTATTATACTCAATGCTCTCATTTGTAACTTGCCTAAAGT  400

seq1  GCTTCTGGATTTAAGTATAATTAAATTGAGAAATGTTCAGAAATGACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGATTTAAGTATAATTAAATTGAGAAATGTTCAGAAATGACTAC  450

seq1  TGCTGCAGTTCTTGTGTTTTAACTATATGGGGAAATATGATCCCTTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGTTCTTGTGTTTTAACTATATGGGGAAATATGATCCCTTTATG  500

seq1  CTTGCACCCTAAACCCATAAAGTAAATGTAGTGTGGAATAATACTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACCCTAAACCCATAAAGTAAATGTAGTGTGGAATAATACTTTTAT  550

seq1  TTCTGTTATTTCTAGCTAGACCTTGTCCATACAGGGAAGACTGTTAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTATTTCTAGCTAGACCTTGTCCATACAGGGAAGACTGTTAAGTT  600

seq1  TAAAACCCCACTGAGATATTAATGATTAAGTAATTTTCACCATCGACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCCACTGAGATATTAATGATTAAGTAATTTTCACCATCGACTTG  650

seq1  ATTTTCTTAAATATTTAGCAGTCATTCTTATTAAAAGTTAACTGTGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTAAATATTTAGCAGTCATTCTTATTAAAAGTTAACTGTGGCAG  700

seq1  CAATGAGAAAATTGAAAACAACCCTTTTCCTGACCCAAATTCCTTTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGAAAATTGAAAACAACCCTTTTCCTGACCCAAATTCCTTTGAAA  750

seq1  GATTTTTTTTTCCCCTTGAAAGGTGGGGGAGGGTGAGAAGAGCACAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTCCCCTTGAAAGGTGGGGGAGGGTGAGAAGAGCACAAGGC  800

seq1  TTCCTGCTTTCATGTGATCATTTGGTTAATTTCTCCTACTGACCAATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTTCATGTGATCATTTGGTTAATTTCTCCTACTGACCAATTTC  850

seq1  ACCACAAAGAGTTACCACACAGGTATCAAGAATTC  885
      |||||||||||||||||||||||||||||||||||
seq2  ACCACAAAGAGTTACCACACAGGTATCAAGAATTC  885