BAC Information

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BAC

Clone NameB6Ng01-237N05
Chromosome13 (Build37)
Map Location 21,332,770 - 21,457,554
singlet/doubletdoublet
Overlap geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream geneLOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237N05.bB6Ng01-237N05.g
ACCGA048682GA048683
length1,1541,168
definitionB6Ng01-237N05.b B6Ng01-237N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,456,398 - 21,457,554)(21,332,770 - 21,333,938)
sequence
gaattcattgactattttaaactttttggctccttttctctctccctttt
attttatacctggatgccaggttgcacttcttttatttcacaggttcatc
ctctttgtactgtgatgtcctaagtttagctcttctcacatgctcatggc
aaatgcattgattggtgtctgaagctggcttgtgtgttgtaacatgtgta
gaatcatcctgtgctcatcaattataacaaccaaatttctctaagaaact
gacaaacgtcctctttggctcggaattaccactggttgaaaaccagcctt
gtcacagttaagacaaagataaaaagggttataaatgattcttttttctg
cctcttttatgtaattttttatagcttatttagactatagagaaaagatt
tagagcttttgtactagaagaaaattcaaactgaggggtttatggtcaat
gtcataaactgtatctcaactttcctactcaaaagttctcgtttccaaca
caaatgggctttctatccctcaagcatgtatcccccacacggaccctccc
atctaactctccattctgctcccatatctcactcattcaggatagtgacc
tccacctccatcttttaactgtttactacagaaatcagggcagtggatat
atgtttttcctggagagatgtgagaaagcttcttttcactccagataggg
cactgaccaaccaaataaagatcccagctaagtctagcttggccaaccaa
gagttccttgagcttgcttatagcacaagtgagaggtttcttaagacacc
aggtggcaagtcccaccctagcactggtgaagaatccatcaaattcacac
cactgaagtcttgctgtccaccaacagatctggacaaagaggattaacag
ctggtatcctccaccagtgttctacttgggagttattaacagctccataa
ctgtgtacatagctatcactgggattaaacacatagcaccgtggattaaa
caacagaccttgcacatactaagcagtctctagcactgaaacaatatccc
catctgttatttttggacagggaacttggcagtatagccatattgtttcc
tcaaccccatcctatgtgcttcattcattctgaatgctagttgacgcatg
tgct
gaattcatttctagggaatcattaaagagagtctttcaggagcagggggt
gtagctcagtggtagagcgcatgctttgcatgcatgaggccccgggttcg
atccccggcacctccacttcccttttgtcctgtgtcaaacctttgcaaga
taccttgccagaatgcttaaaactgttggtgttattgaggatatctcgcc
agggaactgtcaacggatacagaagatagttcctacctgcttagctgttt
aaacctcctgtcagcagaaagctgtctttgcctgctcccaagacagcaag
atctccttccatttttcctcaggttttaagtttatacccatagtctattt
tccctgaacggtactacttctgccgctctgtataaaaacagttaggacta
tctgtgggagtttgctcattgtagagacacagagacacgggatagaatag
aacagaagaatcaacagtcctaggaattgcagttacataatagtagatta
tctacctatcaggtagattggtcctgtgatacattgtttaggagagtttc
agctattataattgtatacacatttattagagttgttatgactttctata
cacattttaaaatcgtctactctatatctacaaaatattttgctgggatt
aaaaaaaaatggttgtggagctggatgtctggctcaatgattaaaaacaa
gtaaacaaactagttgctctttcagaaacccaggttgaaggcccagcctc
tacacagcagctcacagccttgtataattccagttccagtgggtccaatg
ccctcttctggcctctgtgggtaccaggaacatacatccacgcaggcaaa
acacccatgcacatcacacacgcccacacacaccagaccacacaccacag
accacaccacccccccccccacccctgctgttagacagaatgctggcatt
gagcagtctatcgtgaaaccacacaccggcctcttgtcgactttaataag
attttttattaacctctgctttatgaagttaactttgcaaactatggaac
gttagtggagttcttatatatttgtcaatactgaacattcaaatgtgaaa
cgattgtacctggtggctggcctggcgtcacaccctgcctgccaatcttg
cctgcacatcttctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21456398_21457554
seq2: B6Ng01-237N05.b_44_1197 (reverse)

seq1  AGCACATGCCTGTCAACTAGCACTCAG-ATGATGGAAGCACATAGATTGG  49
      |||||||||  ||||||||||| |||| ||||  |||||||||||  |||
seq2  AGCACATGC--GTCAACTAGCATTCAGAATGAATGAAGCACATAGGATGG  48

seq1  GGTTTGAG--AACAATATGGGCTATACTG-CAAG-TCCCTGTCCAAAAAA  95
      || |||||  |||||||| |||||||||| |||| ||||||||| |||||
seq2  GG-TTGAGGAAACAATAT-GGCTATACTGCCAAGTTCCCTGTCC-AAAAA  95

seq1  TAACAAGATTGGGGATA-TGTTTCAGTGCTAGAGGACTTGCTTAGTATGT  144
      |||| ||| |||||||| ||||||||||||||| ||| ||||||||||||
seq2  TAAC-AGA-TGGGGATATTGTTTCAGTGCTAGA-GAC-TGCTTAGTATGT  141

seq1  GCAAGGTCCTGTGTTTAATCCACGGTGCTATGTGTTTAAT-CCAGTGATA  193
      ||||||||   ||||||||||||||||||||||||||||| |||||||||
seq2  GCAAGGTCTGTTGTTTAATCCACGGTGCTATGTGTTTAATCCCAGTGATA  191

seq1  GCTATGTACACAGTTATGGAGCTGTTAAT-ACTCCCAAGTAGAAACACTG  242
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  GCTATGTACACAGTTATGGAGCTGTTAATAACTCCCAAGTAG-AACACTG  240

seq1  GTGGAGGATACCAGCTGTTAATCCCTCTTTGTCCAGATCTGTTGGTGGAC  292
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTGGAGGATACCAGCTGTTAAT-CCTCTTTGTCCAGATCTGTTGGTGGAC  289

seq1  AGCAAGACTTCAGTGGTGTGAATTTGATGGATTCTTCACCAGTGCTAGGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACTTCAGTGGTGTGAATTTGATGGATTCTTCACCAGTGCTAGGG  339

seq1  TGGGACTTGCCACCTGGTGTCTTAAGAAACCTCTCACTTGTGCTATAAGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTGCCACCTGGTGTCTTAAGAAACCTCTCACTTGTGCTATAAGC  389

seq1  AAGCTCAAGGAACTCTTGGTTGGCCAAGCTAGACTTAGCTGGGATCTTTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAAGGAACTCTTGGTTGGCCAAGCTAGACTTAGCTGGGATCTTTA  439

seq1  TTTGGTTGGTCAGTGCCCTATCTGGAGTGAAAAGAAGCTTTCTCACATCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGGTCAGTGCCCTATCTGGAGTGAAAAGAAGCTTTCTCACATCT  489

seq1  CTCCAGGAAAAACATATATCCACTGCCCTGATTTCTGTAGTAAACAGTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGAAAAACATATATCCACTGCCCTGATTTCTGTAGTAAACAGTTA  539

seq1  AAAGATGGAGGTGGAGGTCACTATCCTGAATGAGTGAGATATGGGAGCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGAGGTGGAGGTCACTATCCTGAATGAGTGAGATATGGGAGCAG  589

seq1  AATGGAGAGTTAGATGGGAGGGTCCGTGTGGGGGATACATGCTTGAGGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAGTTAGATGGGAGGGTCCGTGTGGGGGATACATGCTTGAGGGA  639

seq1  TAGAAAGCCCATTTGTGTTGGAAACGAGAACTTTTGAGTAGGAAAGTTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCCCATTTGTGTTGGAAACGAGAACTTTTGAGTAGGAAAGTTGA  689

seq1  GATACAGTTTATGACATTGACCATAAACCCCTCAGTTTGAATTTTCTTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTTTATGACATTGACCATAAACCCCTCAGTTTGAATTTTCTTCT  739

seq1  AGTACAAAAGCTCTAAATCTTTTCTCTATAGTCTAAATAAGCTATAAAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAAAGCTCTAAATCTTTTCTCTATAGTCTAAATAAGCTATAAAAA  789

seq1  ATTACATAAAAGAGGCAGAAAAAAGAATCATTTATAACCCTTTTTATCTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATAAAAGAGGCAGAAAAAAGAATCATTTATAACCCTTTTTATCTT  839

seq1  TGTCTTAACTGTGACAAGGCTGGTTTTCAACCAGTGGTAATTCCGAGCCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAACTGTGACAAGGCTGGTTTTCAACCAGTGGTAATTCCGAGCCA  889

seq1  AAGAGGACGTTTGTCAGTTTCTTAGAGAAATTTGGTTGTTATAATTGATG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACGTTTGTCAGTTTCTTAGAGAAATTTGGTTGTTATAATTGATG  939

seq1  AGCACAGGATGATTCTACACATGTTACAACACACAAGCCAGCTTCAGACA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGATGATTCTACACATGTTACAACACACAAGCCAGCTTCAGACA  989

seq1  CCAATCAATGCATTTGCCATGAGCATGTGAGAAGAGCTAAACTTAGGACA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAATGCATTTGCCATGAGCATGTGAGAAGAGCTAAACTTAGGACA  1039

seq1  TCACAGTACAAAGAGGATGAACCTGTGAAATAAAAGAAGTGCAACCTGGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTACAAAGAGGATGAACCTGTGAAATAAAAGAAGTGCAACCTGGC  1089

seq1  ATCCAGGTATAAAATAAAAGGGAGAGAGAAAAGGAGCCAAAAAGTTTAAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGTATAAAATAAAAGGGAGAGAGAAAAGGAGCCAAAAAGTTTAAA  1139

seq1  ATAGTCAATGAATTC  1157
      |||||||||||||||
seq2  ATAGTCAATGAATTC  1154

seq1: chr13_21332770_21333938
seq2: B6Ng01-237N05.g_67_1234

seq1  GAATTCATTTCTAGGGAATCATTAAAGAGAGTCTTTCAGGAGCAGGGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTAGGGAATCATTAAAGAGAGTCTTTCAGGAGCAGGGGGT  50

seq1  GTAGCTCAGTGGTAGAGCGCATGCTTTGCATGCATGAGGCCCCGGGTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCAGTGGTAGAGCGCATGCTTTGCATGCATGAGGCCCCGGGTTCG  100

seq1  ATCCCCGGCACCTCCACTTCCCTTTTGTCCTGTGTCAAACCTTTGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCGGCACCTCCACTTCCCTTTTGTCCTGTGTCAAACCTTTGCAAGA  150

seq1  TACCTTGCCAGAATGCTTAAAACTGTTGGTGTTATTGAGGATATCTCGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCCAGAATGCTTAAAACTGTTGGTGTTATTGAGGATATCTCGCC  200

seq1  AGGGAACTGTCAACGGATACAGAAGATAGTTCCTACCTGCTTAGCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACTGTCAACGGATACAGAAGATAGTTCCTACCTGCTTAGCTGTTT  250

seq1  AAACCTCCTGTCAGCAGAAAGCTGTCTTTGCCTGCTCCCAAGACAGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCTGTCAGCAGAAAGCTGTCTTTGCCTGCTCCCAAGACAGCAAG  300

seq1  ATCTCCTTCCATTTTTCCTCAGGTTTTAAGTTTATACCCATAGTCTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTCCATTTTTCCTCAGGTTTTAAGTTTATACCCATAGTCTATTT  350

seq1  TCCCTGAACGGTACTACTTCTGCCGCTCTGTATAAAAACAGTTAGGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAACGGTACTACTTCTGCCGCTCTGTATAAAAACAGTTAGGACTA  400

seq1  TCTGTGGGAGTTTGCTCATTGTAGAGACACAGAGACACGGGATAGAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGAGTTTGCTCATTGTAGAGACACAGAGACACGGGATAGAATAG  450

seq1  AACAGAAGAATCAACAGTCCTAGGAATTGCAGTTACATAATAGTAGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGAATCAACAGTCCTAGGAATTGCAGTTACATAATAGTAGATTA  500

seq1  TCTACCTATCAGGTAGATTGGTCCTGTGATACATTGTTTAGGAGAGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTATCAGGTAGATTGGTCCTGTGATACATTGTTTAGGAGAGTTTC  550

seq1  AGCTATTATAATTGTATACACATTTATTAGAGTTGTTATGACTTTCTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTATAATTGTATACACATTTATTAGAGTTGTTATGACTTTCTATA  600

seq1  CACATTTTAAAATCGTCTACTCTATATCTACAAAATATTTTGCTGGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTAAAATCGTCTACTCTATATCTACAAAATATTTTGCTGGGATT  650

seq1  AAAAAAAAATGGTTGTGGAGCTGGATGTCTGGCTCAATGATTAAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATGGTTGTGGAGCTGGATGTCTGGCTCAATGATTAAAAACAA  700

seq1  GTAAACAAACTAGTTGCTCTTTCAGAAACCCAGGTTGAAGGCCCAGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAACTAGTTGCTCTTTCAGAAACCCAGGTTGAAGGCCCAGCCTC  750

seq1  TACACAGCAGCTCACAGCCTTGTATAATTCCAGTTCCAGTGGGTCCAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCAGCTCACAGCCTTGTATAATTCCAGTTCCAGTGGGTCCAATG  800

seq1  CCCTCTTCTGGCCTCTGTGGGTACCAGGAACATACATCCACGCAGGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGGCCTCTGTGGGTACCAGGAACATACATCCACGCAGGCAAA  850

seq1  ACACCCATGCACATCACACACGCACACACACACACAGACACACACACACA  900
      ||||||||||||||||||||||| ||||||||| ||||| ||||||| ||
seq2  ACACCCATGCACATCACACACGCCCACACACAC-CAGAC-CACACAC-CA  897

seq1  CAGACACACACACACACACACACACACACACACACACACACTGCTGTTAG  950
      |||||           ||||| ||| | | | | ||| | ||||||||||
seq2  CAGAC-----------CACAC-CACCCCCCCCCCCAC-CCCTGCTGTTAG  934

seq1  ACAGAATGCTGGGCATTGAGCAGTCTATCGTTGACACACACACCGGCCTC  1000
      |||||||||| ||||||||||||||||||||  |  ||||||||||||||
seq2  ACAGAATGCT-GGCATTGAGCAGTCTATCGTGAAACCACACACCGGCCTC  983

seq1  TTGTCGGACTTTAATAAGA-TTTTTATTAA-CTCTGC-TTATGAAGTTAA  1047
      ||||| ||||||||||||| |||||||||| |||||| ||||||||||||
seq2  TTGTC-GACTTTAATAAGATTTTTTATTAACCTCTGCTTTATGAAGTTAA  1032

seq1  C-TTGCAAACTATGG-ACG-TAGT-GAGT--CTATATA-TTGTC-ATACT  1089
      | ||||||||||||| ||| |||| ||||   |||||| ||||| |||||
seq2  CTTTGCAAACTATGGAACGTTAGTGGAGTTCTTATATATTTGTCAATACT  1082

seq1  G-ACATTCAAATGTG-AACGATTGTACCT-GTGGCTG--CT-GCGTCCAC  1133
      | ||||||||||||| ||||||||||||| |||||||  || |||| |||
seq2  GAACATTCAAATGTGAAACGATTGTACCTGGTGGCTGGCCTGGCGT-CAC  1131

seq1  CCCTTCCCTGCCCATCTTCCCTGCACATCTTC-CTCA  1169
       || | |||||| ||||| ||||||||||||| ||||
seq2  ACCCTGCCTGCCAATCTTGCCTGCACATCTTCTCTCA  1168