BAC Information

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BAC

Clone NameB6Ng01-237P21
Chromosome13 (Build37)
Map Location 23,798,808 - 23,953,429
singlet/doubletdoublet
Overlap geneHfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Upstream geneLOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c
Downstream geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237P21.bB6Ng01-237P21.g
ACCGA048805GA048806
length1,1471,068
definitionB6Ng01-237P21.b B6Ng01-237P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,798,808 - 23,799,955)(23,952,371 - 23,953,429)
sequence
gaattccaggtgatcttgcccgtcataaccatatctccagaagccgctgg
tactgttgtcttcatgcacctcacagcctaggaccacctgcaggatgtgg
gactcggacaccactcccaacttcgtgactggaaataaaaaggttggttt
tgtcttcaccatctccaagtatcgagtgatctgaggcacacaactatctc
cctctggatttccccccaaccccaggatctcacttcaagatatgatacag
gataattgaacctatttctagtttgtggggctgagcacacatcttcaatc
cctctgtctagaacacagactcaccctactattcgagtttaatcccaaac
aacaaaggtaaagttagtttgtagaaggaagcactcatatttgaaagtga
tgtctgattaagaggcagatgaagtgacaaatcagagttgacagaaaagg
atatgcccaactgtcacaagaagatagaggaaaagtgagagacagacagc
acgggaggaggagcgtccagtccaggaacacaggagattccatggagaca
gtgcagtagagctgtgagggagagtggagaagcacagggagggagaagga
ggcagtgttaccagaagagttttacggagaccgactgaagagagaacgag
ctagacacaggtgaagacagaacaagtaagagaaggagaagaagccagga
gattagaaaacattgccagagtttgtgtgaggccaagcagaacctctgaa
gagcctgagagaaaagccatattgaataaccagctgtgagaggagtcgga
gccagaacagctgagttgaaccagccagccagagttcagagagagctaga
aaaagtcagcttgttgagcagcaagtctcagaggctgagaacattctagg
ccgagattagattgtacggaggctagaagcttccctgagtaggcctaggt
tagcagacagaggcagagagcctcctagacatcaagtaacaccaggagaa
taaaagtttcttttaacaaagctatatcccaaggttggaaaaatagtgct
atgcttctgagcatctcaggggagtgactctgctccacgtacctactggt
ggtataggtggccatgattgttcagagctactatgaacatgtagtcc
gaattcatgtaaaggccagaaagagagagactgccacccttggttttacc
catcctcaggagagagaggtgtttgagagaactctcctgtgagattaggg
tgatattttgatggctcacctatgcatataatgtcttctttctgtggtct
tcaacaaccatggtgaaaaaggagctaccgtgtgcattggagagacagat
agaggtgtggagggggcatgggctgtctttggtttgcaacagctcctgag
ctaatgagtcaatttttcatttaccaagacccagcagcataagacaatgt
attgtgtagtgtaatatctgcaacttctttagagattaatagaagtatta
accaagattaatagtatgtttattctgtgcaatgaaattttatccatgat
aaattgactgcctctaatgtaatactttgaggaagctatttaacctcaga
gttataagaaaaattgaaataataactgccagccaatggggttgtcataa
agatttaataaaaggacaagtatagtttgttgacttttggcaaatgttcc
tgatccaagtagaacacaccttcatgagcagtgttaggcagaagttccaa
gaacagtctcttgggttggactgctcagaactgacccccaacctgttgct
catggttgggcattcatcatgttactaagccactcttggagtgtccatga
tgttagctattgttattactcaagaacaatcagttttctccttagtcatt
gtcctggttggtttactttatcaaggtgacacaagctagaggtatctggg
gagaagaaccacagatgtgaaaaagcttcccatcaggcctataggacaag
tcttgattaatattttattgattgatgatgtatgttggggagacctagac
cactggtggtgggttccatccttgggcaggtaggtggccccgagttaata
taaggaagcagcatggaaaaacccacagagaacaagtctgtaagcagcac
ctccccccatggcttctgtttcagtttctgcattgaagtttctgccctta
agtcctgtacctgactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23798808_23799955
seq2: B6Ng01-237P21.b_47_1193

seq1  GAATTCCAGGTGATCTTGCCCGTCATAACCATATCTCCAGAAGCCGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGATCTTGCCCGTCATAACCATATCTCCAGAAGCCGCTGG  50

seq1  TACTGTTGTCTTCATGCACCTCACAGCCTAGGACCACCTGCAGGATGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTGTCTTCATGCACCTCACAGCCTAGGACCACCTGCAGGATGTGG  100

seq1  GACTCGGACACCACTCCCAACTTCGTGACTGGAAATAAAAAGGTTGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGGACACCACTCCCAACTTCGTGACTGGAAATAAAAAGGTTGGTTT  150

seq1  TGTCTTCACCATCTCCAAGTATCGAGTGATCTGAGGCACACAACTATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCACCATCTCCAAGTATCGAGTGATCTGAGGCACACAACTATCTC  200

seq1  CCTCTGGATTTCCCCCCAACCCCAGGATCTCACTTCAAGATATGATACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGATTTCCCCCCAACCCCAGGATCTCACTTCAAGATATGATACAG  250

seq1  GATAATTGAACCTATTTCTAGTTTGTGGGGCTGAGCACACATCTTCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTGAACCTATTTCTAGTTTGTGGGGCTGAGCACACATCTTCAATC  300

seq1  CCTCTGTCTAGAACACAGACTCACCCTACTATTCGAGTTTAATCCCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTAGAACACAGACTCACCCTACTATTCGAGTTTAATCCCAAAC  350

seq1  AACAAAGGTAAAGTTAGTTTGTAGAAGGAAGCACTCATATTTGAAAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGTAAAGTTAGTTTGTAGAAGGAAGCACTCATATTTGAAAGTGA  400

seq1  TGTCTGATTAAGAGGCAGATGAAGTGACAAATCAGAGTTGACAGAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATTAAGAGGCAGATGAAGTGACAAATCAGAGTTGACAGAAAAGG  450

seq1  ATATGCCCAACTGTCACAAGAAGATAGAGGAAAAGTGAGAGACAGACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCCAACTGTCACAAGAAGATAGAGGAAAAGTGAGAGACAGACAGC  500

seq1  ACGGGAGGAGGAGCGTCCAGTCCAGGAACACAGGAGATTCCATGGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAGGAGGAGCGTCCAGTCCAGGAACACAGGAGATTCCATGGAGACA  550

seq1  GTGCAGTAGAGCTGTGAGGGAGAGTGGAGAAGCACAGGGAGGGAGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTAGAGCTGTGAGGGAGAGTGGAGAAGCACAGGGAGGGAGAAGGA  600

seq1  GGCAGTGTTACCAGAAGAGTTTTACGGAGACCGACTGAAGAGAGAACGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTTACCAGAAGAGTTTTACGGAGACCGACTGAAGAGAGAACGAG  650

seq1  CTAGACACAGGTGAAGACAGAACAAGTAAGAGAAGGAGAAGAAGCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACACAGGTGAAGACAGAACAAGTAAGAGAAGGAGAAGAAGCCAGGA  700

seq1  GATTAGAAAACATTGCCAGAGTTTGTGTGAGGCCAAGCAGAACCTCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAAAACATTGCCAGAGTTTGTGTGAGGCCAAGCAGAACCTCTGAA  750

seq1  GAGCCTGAGAGAAAAGCCATATTGAATAACCAGCTGTGAGAGGAGTCGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGAGAGAAAAGCCATATTGAATAACCAGCTGTGAGAGGAGTCGGA  800

seq1  GCCAGAACAGCTGAGTTGAACCAGCCAGCCAGAGTTCAGAGAGAGCTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAACAGCTGAGTTGAACCAGCCAGCCAGAGTTCAGAGAGAGCTAGA  850

seq1  AAAAGTCAGCTTGTTGAGCAGCAAGTCTCAGAGGCTGAGAACATTCTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAGCTTGTTGAGCAGCAAGTCTCAGAGGCTGAGAACATTCTAGG  900

seq1  CCGAGATTAGATTGTACGGAGGCTAGAAGCTTCCCTGAGTAGGCCTAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATTAGATTGTACGGAGGCTAGAAGCTTCCCTGAGTAGGCCTAGGT  950

seq1  TAGCAGACAGAGGCAGAGAGCCTCCTAGACATCAAGT-ACACCAGGAGAA  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGCAGACAGAGGCAGAGAGCCTCCTAGACATCAAGTAACACCAGGAGAA  1000

seq1  TAAAAGTTTCTTTT-ACAAAGCTATATCCCCAGGGTTGGAAAATAGTGCT  1048
      |||||||||||||| ||||||||||||||| ||| | | |||||||||||
seq2  TAAAAGTTTCTTTTAACAAAGCTATATCCCAAGGTTGGAAAAATAGTGCT  1050

seq1  ATGC-TCTGAGCATCTCAGGGGAGTGACTCTGCTCCACGTACCCTTACTG  1097
      |||| ||||||||||||||||||||||||||||||||||||||  |||||
seq2  ATGCTTCTGAGCATCTCAGGGGAGTGACTCTGCTCCACGTACC--TACTG  1098

seq1  TGGTTATAGTTGCCCATGATGGTCCAGAAGTCTACTATGAACATGTAGTC  1147
        | ||||| || ||||||| || ||||   |||||||||||||||||||
seq2  GTGGTATAGGTGGCCATGATTGTTCAGA--GCTACTATGAACATGTAGTC  1146

seq1  C  1148
      |
seq2  C  1147

seq1: chr13_23952371_23953429
seq2: B6Ng01-237P21.g_65_1132 (reverse)

seq1  GGAGTCA-GTACAGGAACTTAA-GGCAGAAACCTCAATGCAGAAACTGAA  48
      ||||||| ||||||| |||||| ||||||||| |||||||||||||||||
seq2  GGAGTCAGGTACAGG-ACTTAAGGGCAGAAACTTCAATGCAGAAACTGAA  49

seq1  ACAGAAGCCATGGGGG--AGTGCTGCTTACAGACTTGTTCTCTGTGGGTT  96
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  ACAGAAGCCATGGGGGGAGGTGCTGCTTACAGACTTGTTCTCTGTGGGTT  99

seq1  TTT-CATGCTGCTTTCTTATA-TAACTCGGGGCCACCTACCTGCCCAAGG  144
      ||| |||||||||| |||||| ||||||||||||||||||||||||||||
seq2  TTTCCATGCTGCTTCCTTATATTAACTCGGGGCCACCTACCTGCCCAAGG  149

seq1  ATGGAA-CCACCACCAGTGGTCTAGGTCT-CCCAACATACATCATCAATC  192
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGGAACCCACCACCAGTGGTCTAGGTCTCCCCAACATACATCATCAATC  199

seq1  AATAAAATATTAATCAAGACTTGT-CTATAGGCCTGAT-GGAAGCTTTTT  240
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AATAAAATATTAATCAAGACTTGTCCTATAGGCCTGATGGGAAGCTTTTT  249

seq1  CACATCTGTGGTTCTTCTCCCCAGATACCTCTAGCTTGTGTCACCTTGAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTGGTTCTTCTCCCCAGATACCTCTAGCTTGTGTCACCTTGAT  299

seq1  AAAGTAAACCAACCAGGACAATGACTAAGGAGAAAACTGATTGTTCTTGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAACCAACCAGGACAATGACTAAGGAGAAAACTGATTGTTCTTGA  349

seq1  GTAATAACAATAGCTAACATCATGGACACTCCAAGAGTGGCTTAGTAACA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAACAATAGCTAACATCATGGACACTCCAAGAGTGGCTTAGTAACA  399

seq1  TGATGAATGCCCAACCATGAGCAACAGGTTGGGGGTCAGTTCTGAGCAGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATGCCCAACCATGAGCAACAGGTTGGGGGTCAGTTCTGAGCAGT  449

seq1  CCAACCCAAGAGACTGTTCTTGGAACTTCTGCCTAACACTGCTCATGAAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCAAGAGACTGTTCTTGGAACTTCTGCCTAACACTGCTCATGAAG  499

seq1  GTGTGTTCTACTTGGATCAGGAACATTTGCCAAAAGTCAACAAACTATAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTCTACTTGGATCAGGAACATTTGCCAAAAGTCAACAAACTATAC  549

seq1  TTGTCCTTTTATTAAATCTTTATGACAACCCCATTGGCTGGCAGTTATTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTTTATTAAATCTTTATGACAACCCCATTGGCTGGCAGTTATTA  599

seq1  TTTCAATTTTTCTTATAACTCTGAGGTTAAATAGCTTCCTCAAAGTATTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTTTCTTATAACTCTGAGGTTAAATAGCTTCCTCAAAGTATTA  649

seq1  CATTAGAGGCAGTCAATTTATCATGGATAAAATTTCATTGCACAGAATAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAGGCAGTCAATTTATCATGGATAAAATTTCATTGCACAGAATAA  699

seq1  ACATACTATTAATCTTGGTTAATACTTCTATTAATCTCTAAAGAAGTTGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTATTAATCTTGGTTAATACTTCTATTAATCTCTAAAGAAGTTGC  749

seq1  AGATATTACACTACACAATACATTGTCTTATGCTGCTGGGTCTTGGTAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTACACTACACAATACATTGTCTTATGCTGCTGGGTCTTGGTAAA  799

seq1  TGAAAAATTGACTCATTAGCTCAGGAGCTGTTGCAAACCAAAGACAGCCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTGACTCATTAGCTCAGGAGCTGTTGCAAACCAAAGACAGCCC  849

seq1  ATGCCCCCTCCACACCTCTATCTGTCTCTCCAATGCACACGGTAGCTCCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCCTCCACACCTCTATCTGTCTCTCCAATGCACACGGTAGCTCCT  899

seq1  TTTTCACCATGGTTGTTGAAGACCACAGAAAGAAGACATTATATGCATAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCATGGTTGTTGAAGACCACAGAAAGAAGACATTATATGCATAG  949

seq1  GTGAGCCATCAAAATATCACCCTAATCTCACAGGAGAGTTCTCTCAAACA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCATCAAAATATCACCCTAATCTCACAGGAGAGTTCTCTCAAACA  999

seq1  CCTCTCTCTCCTGAGGATGGGTAAAACCAAGGGTGGCAGTCTCTCTCTTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTCCTGAGGATGGGTAAAACCAAGGGTGGCAGTCTCTCTCTTT  1049

seq1  CTGGCCTTTACATGAATTC  1059
      |||||||||||||||||||
seq2  CTGGCCTTTACATGAATTC  1068