BAC Information

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BAC

Clone NameB6Ng01-238N07
Chromosome13 (Build37)
Map Location 21,449,912 - 21,591,937
singlet/doubletdoublet
Overlap geneZfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367
Downstream geneLOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238N07.bB6Ng01-238N07.g
ACCGA049424GA049425
length833804
definitionB6Ng01-238N07.b B6Ng01-238N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,591,109 - 21,591,937)(21,449,912 - 21,450,710)
sequence
gaattcaagtaacatttccaaatctattattcctctgttctttaaaccat
gccttttgataaataaatcttaattttaatataccctagctcaccaatat
tattcttttacattcacatatatgatgtctgcatatacatgtagagtata
tattttctcaattagtgtatatgtatatacatactcaatatatgtatatt
ttttcaattagtgtatatatatatgtaattaatatgcatatatagcatac
atatgtatctatacatatatacactatatcacattatatatgtgtatata
tacatacacactaatatatatactatatacgtatactatatatacattat
atatacatactaattatatatgcatatgtatgtgagtgtggatagataga
ttgatagatagatagatacatagatagatcctttcatctggatctcatgg
aggcctctcctcaactgaggctcctttccctctgatgactctaacttgcg
tcaaactgacacacaaaccagccaatacaccttctcttgaataactatag
ttgtgtcaaattgacataaaactatccagcatagtcttcaattgctgttg
gattcattcttgggcaatttatatctttccattgatagtttaatcaaatt
taaaattgattattcaatttaacacatactttacttttgaaagtagcatt
gtaacccaatgccaacgacgacctcaatacatatttaggggtgagtaccc
cataggctgggaggcaggaggaacacaaattttagaccaggcctgggata
cattcattttaggactacagtagtgagaaaggg
aatggtgatgctactcaggcccctggatgtggagacacttgtgaccatga
gggcagactggagaagcagcagtgaagttcagcagtgaaaagagcctaaa
tctgtgctgaatgtggaaacggcttcacttagcattgcattctcgttgag
caccagagaacacacacaggcaggcagcatgtggaaggaccttcagccag
tggtcagacctgctccagtgccaaagactctacactgtggagaaacatta
ccaatccacagaatgtagtagaatctgccccaaaggttaaagccgaaagt
gggaatagatacaatgaagacagagataataaaccttttcaatctgtttc
aatgacctaccaaacatggaggaattttatgttatcatgaggatctcact
ctggaccctttggggctctccatccttggatttccattgaaatagttcaa
acaagacaaacacaatagtgtagcaggtagacaagtttactgtagaatag
agtggtgtggacatttctggtatctttggagactcagttatatcttgtga
tgtttttctggaaattattttatgagatgatgtttttgttgaagcagaca
ggtgggaggatgttttgctgagaacaggcatgttgtgtttttctggatga
tgcctggaaaggtgacttgtgatattctgctacatctgtcgttttgagag
acacatggatatttgggaaaggatacaaatataactccaacggacagtga
atggggtggcattggttcactttgccattctgcttccttcttcattgggt
tttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21591109_21591937
seq2: B6Ng01-238N07.b_46_878 (reverse)

seq1  CCCTTTCTCACTACTGTAGTCCT-AAATG-ATGTATCCCAGG-CTGGTCT  47
      ||||||||||||||||||||||| ||||| |||||||||||| |||||||
seq2  CCCTTTCTCACTACTGTAGTCCTAAAATGAATGTATCCCAGGCCTGGTCT  50

seq1  AAAATTTGTGTTCCTCCTGCCT-CCAGCCTATGGGGTACTCACCCCTAAA  96
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAATTTGTGTTCCTCCTGCCTCCCAGCCTATGGGGTACTCACCCCTAAA  100

seq1  TATGTATTGAGGTCGTCGTTGGCATTGGGTTACAATGCTACTTTCAAAAG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTGAGGTCGTCGTTGGCATTGGGTTACAATGCTACTTTCAAAAG  150

seq1  TAAAGTATGTGTTAAATTGAATAATCAATTTTAAATTTGATTAAACTATC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATGTGTTAAATTGAATAATCAATTTTAAATTTGATTAAACTATC  200

seq1  AATGGAAAGATATAAATTGCCCAAGAATGAATCCAACAGCAATTGAAGAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAGATATAAATTGCCCAAGAATGAATCCAACAGCAATTGAAGAC  250

seq1  TATGCTGGATAGTTTTATGTCAATTTGACACAACTATAGTTATTCAAGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGATAGTTTTATGTCAATTTGACACAACTATAGTTATTCAAGAG  300

seq1  AAGGTGTATTGGCTGGTTTGTGTGTCAGTTTGACGCAAGTTAGAGTCATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTATTGGCTGGTTTGTGTGTCAGTTTGACGCAAGTTAGAGTCATC  350

seq1  AGAGGGAAAGGAGCCTCAGTTGAGGAGAGGCCTCCATGAGATCCAGATGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAAGGAGCCTCAGTTGAGGAGAGGCCTCCATGAGATCCAGATGA  400

seq1  AAGGATCTATCTATGTATCTATCTATCTATCAATCTATCTATCCACACTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTATCTATGTATCTATCTATCTATCAATCTATCTATCCACACTC  450

seq1  ACATACATATGCATATATAATTAGTATGTATATATAATGTATATATAGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATATGCATATATAATTAGTATGTATATATAATGTATATATAGTA  500

seq1  TACGTATATAGTATATATATTAGTGTGTATGTATATATACACATATATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATATAGTATATATATTAGTGTGTATGTATATATACACATATATAA  550

seq1  TGTGATATAGTGTATATATGTATAGATACATATGTATGCTATATATGCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATAGTGTATATATGTATAGATACATATGTATGCTATATATGCAT  600

seq1  ATTAATTACATATATATATACACTAATTGAAAAAATATACATATATTGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTACATATATATATACACTAATTGAAAAAATATACATATATTGAG  650

seq1  TATGTATATACATATACACTAATTGAGAAAATATATACTCTACATGTATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATACATATACACTAATTGAGAAAATATATACTCTACATGTATA  700

seq1  TGCAGACATCATATATGTGAATGTAAAAGAATAATATTGGTGAGCTAGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACATCATATATGTGAATGTAAAAGAATAATATTGGTGAGCTAGGG  750

seq1  TATATTAAAATTAAGATTTATTTATCAAAAGGCATGGTTTAAAGAACAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAAATTAAGATTTATTTATCAAAAGGCATGGTTTAAAGAACAGA  800

seq1  GGAATAATAGATTTGGAAATGTTACTTGAATTC  829
      |||||||||||||||||||||||||||||||||
seq2  GGAATAATAGATTTGGAAATGTTACTTGAATTC  833

seq1: chr13_21449912_21450710
seq2: B6Ng01-238N07.g_78_881

seq1  AATGGTGATGCTACTCAGGCCCCTGGATGTGGAGACACTTGTGACCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGATGCTACTCAGGCCCCTGGATGTGGAGACACTTGTGACCATGA  50

seq1  GGGCAGACTGGAGAAGCAGCAGTGAAGTTCAGCAGTGAAAAGAGCCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGACTGGAGAAGCAGCAGTGAAGTTCAGCAGTGAAAAGAGCCTAAA  100

seq1  TCTGTGCTGAATGTGGAAACGGCTTCACTTAGCATTGCATTCTCGTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGAATGTGGAAACGGCTTCACTTAGCATTGCATTCTCGTTGAG  150

seq1  CACCAGAGAACACACACAGGCAGGCAGCATGTGGAAGGACCTTCAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGAACACACACAGGCAGGCAGCATGTGGAAGGACCTTCAGCCAG  200

seq1  TGGTCAGACCTGCTCCAGTGCCAAAGACTCTACACTGTGGAGAAACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGACCTGCTCCAGTGCCAAAGACTCTACACTGTGGAGAAACATTA  250

seq1  CCAATCCACAGAATGTAGTAGAATCTGCCCCAAAGGTTAAAGCCGAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCACAGAATGTAGTAGAATCTGCCCCAAAGGTTAAAGCCGAAAGT  300

seq1  GGGAATAGATACAATGAAGACAGAGATAATAAACCTTTTCAATCTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAGATACAATGAAGACAGAGATAATAAACCTTTTCAATCTGTTTC  350

seq1  AATGACCTACCAAACATGGAGGAATTTTATGTTATCATGAGGATCTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTACCAAACATGGAGGAATTTTATGTTATCATGAGGATCTCACT  400

seq1  CTGGACCCTTTGGGGCTCTCCATCCTTGGATTTCCATTGAAATAGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCCTTTGGGGCTCTCCATCCTTGGATTTCCATTGAAATAGTTCAA  450

seq1  ACAAGACAAACACAATAGTGTAGCAGGTAGACAAGTTTACTGTAGAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAAACACAATAGTGTAGCAGGTAGACAAGTTTACTGTAGAATAG  500

seq1  AGTGGTGTGGACATTTCTGGTATCTTTGGAGACTCAGTTATATCTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTGGACATTTCTGGTATCTTTGGAGACTCAGTTATATCTTGTGA  550

seq1  TGTTTTTCTGGAAATTATTTTATGAGATGATGTTTTTGTTGAAGCAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTGGAAATTATTTTATGAGATGATGTTTTTGTTGAAGCAGACA  600

seq1  GGTGGGAGGATGTTTTGCTGAGAACAGGCATGTTGTGTTTTTCTGGATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGGATGTTTTGCTGAGAACAGGCATGTTGTGTTTTTCTGGATGA  650

seq1  TGCCTGGAAAGGGGACTTGTGATATTCTGCTACATCTGTCG-TTTGAGAG  699
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  TGCCTGGAAAGGTGACTTGTGATATTCTGCTACATCTGTCGTTTTGAGAG  700

seq1  AACACAT-GATATTT-GGAAAGGATACAAATATAAC-CCAACGGACAGTG  746
       |||||| ||||||| |||||||||||||||||||| |||||||||||||
seq2  -ACACATGGATATTTGGGAAAGGATACAAATATAACTCCAACGGACAGTG  749

seq1  AATGGGGTGGCATTGGTTCACCTTGCCATTCTGCT--CCTCTTCATTGGG  794
      ||||||||||||||||||||| |||||||||||||  | |||||||||||
seq2  AATGGGGTGGCATTGGTTCACTTTGCCATTCTGCTTCCTTCTTCATTGGG  799

seq1  TTTTG  799
      |||||
seq2  TTTTG  804