BAC Information

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BAC

Clone NameB6Ng01-238N10
Chromosome13 (Build37)
Map Location 83,177,515 - 83,289,562
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC238756, LOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238N10.bB6Ng01-238N10.g
ACCGA049430GA049431
length1061,000
definitionB6Ng01-238N10.b B6Ng01-238N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,289,457 - 83,289,562)(83,177,515 - 83,178,504)
sequence
ctatttttaaaatctattcatttaagaattggaaaaattcctgttcctgt
ttactccaaaaatacttaagtgtgagaagaaaaaaaatgccagccaatgt
gtgtgt

gaattcaatacttcaatacctaaggaaaccagaagaacctaccagaagtc
ctgaagtcagagttctatgcatttgttacccccctgacacacatgctcag
atacaaactcagagcccctgcaagagcagtacacactctgaacatctgcg
gcatctctccaactgttttatggttttgaatagaaaaagtggggaaagga
cttttaggatacaaaattcctcctcctgaaaacaatcattttcaaatctc
tctgttttaaaggtgggccaataaacaaatgtattccgactgcactgatg
accaaaatagttaaagcaaacccaaatttcacaattgctgcctcaaagga
ataacacaggtttgattcttgagggaggcaaaaatggttcctgttacttc
attatacaaatcattgaattcacatattctccacagataagaaagaacta
tgataatttgaacctagaaaaaacttgttctgttatttatttcaccaatt
ctagttttatactcagaatagttatatataatttctcataaacattcaaa
aagcttacataaaataagacaactcaatatataaagaaaaaaattcggtg
gtttgtgctttgtttgattgttttgtaagacaaactttataagtttagta
gacaaatgtgtggagtcaagggcagctctggggaaactgaagtaatatac
aaggattaaggtggaataaacaaaaaagtgattaagatataataaagaag
aagctagaataaattccttttatatcaacccctgaagtagagaattgaaa
ctaacctgaacattgggctctcagtactcagtgtattctcaggcagagat
atttgtgtggcctcctggtatgcatcatagtccctaataccatatagttc
actgaacaggtaggaaaaaaaaaacgataatgttttttcatgagaagatg
gggcataattcctccttttacacccatgtgcaaaactctacagtaagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_83289457_83289562
seq2: B6Ng01-238N10.b_54_159 (reverse)

seq1  ACACACACATTGGCTGGCATTTTTTTTCTTCTCACACTTAAGTATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATTGGCTGGCATTTTTTTTCTTCTCACACTTAAGTATTTTTG  50

seq1  GAGTAAACAGGAACAGGAATTTTTCCAATTCTTAAATGAATAGATTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAACAGGAACAGGAATTTTTCCAATTCTTAAATGAATAGATTTTAA  100

seq1  AAATAG  106
      ||||||
seq2  AAATAG  106


seq1: chr13_83177515_83178504
seq2: B6Ng01-238N10.g_70_1069

seq1  GAATTCAATACTTCAATACCTAAGGAAACCAGAAGAACCTACCAGAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACTTCAATACCTAAGGAAACCAGAAGAACCTACCAGAAGTC  50

seq1  CTGAAGTCAGAGTTCTATGCATTTGTTACCCCCCTGACACACATGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTCAGAGTTCTATGCATTTGTTACCCCCCTGACACACATGCTCAG  100

seq1  ATACAAACTCAGAGCCCCTGCAAGAGCAGTACACACTCTGAACATCTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACTCAGAGCCCCTGCAAGAGCAGTACACACTCTGAACATCTGCG  150

seq1  GCATCTCTCCAACTGTTTTATGGTTTTGAATAGAAAAAGTGGGGAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCTCCAACTGTTTTATGGTTTTGAATAGAAAAAGTGGGGAAAGGA  200

seq1  CTTTTAGGATACAAAATTCCTCCTCCTGAAAACAATCATTTTCAAATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGATACAAAATTCCTCCTCCTGAAAACAATCATTTTCAAATCTC  250

seq1  TCTGTTTTAAAGGTGGGCCAATAAACAAATGTATTCCGACTGCACTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTAAAGGTGGGCCAATAAACAAATGTATTCCGACTGCACTGATG  300

seq1  ACCAAAATAGTTAAAGCAAACCCAAATTTCACAATTGCTGCCTCAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATAGTTAAAGCAAACCCAAATTTCACAATTGCTGCCTCAAAGGA  350

seq1  ATAACACAGGTTTGATTCTTGAGGGAGGCAAAAATGGTTCCTGTTACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACAGGTTTGATTCTTGAGGGAGGCAAAAATGGTTCCTGTTACTTC  400

seq1  ATTATACAAATCATTGAATTCACATATTCTCCACAGATAAGAAAGAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAAATCATTGAATTCACATATTCTCCACAGATAAGAAAGAACTA  450

seq1  TGATAATTTGAACCTAGAAAAAACTTGTTCTGTTATTTATTTCACCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTTGAACCTAGAAAAAACTTGTTCTGTTATTTATTTCACCAATT  500

seq1  CTAGTTTTATACTCAGAATAGTTATATATAATTTCTCATAAACATTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTATACTCAGAATAGTTATATATAATTTCTCATAAACATTCAAA  550

seq1  AAGCTTACATAAAATAAGACAACTCAATATATAAAGAAAAAAATTCGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTACATAAAATAAGACAACTCAATATATAAAGAAAAAAATTCGGTG  600

seq1  GTTTGTGCTTTGTTTGATTGTTTTGTAAGACAAACTTTATAAGTTTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGCTTTGTTTGATTGTTTTGTAAGACAAACTTTATAAGTTTAGTA  650

seq1  GACAAATGTGTGGAGTCAAGGGCAGCTCTGGGGAAACTGAAGTAATATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGTGTGGAGTCAAGGGCAGCTCTGGGGAAACTGAAGTAATATAC  700

seq1  AAGGATTAAGGTGGAATAAACAAAAAAGTGATTAAGATATAATAAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTAAGGTGGAATAAACAAAAAAGTGATTAAGATATAATAAAGAAG  750

seq1  AAGCTAGAATAAATTCCTTTTATATCAACCCCTGAAGTAGAGAATTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAATAAATTCCTTTTATATCAACCCCTGAAGTAGAGAATTGAAA  800

seq1  CTAACCTGAACATTGGGCTCTCAGTACTCAGTGTATTCTCAGGCAGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGAACATTGGGCTCTCAGTACTCAGTGTATTCTCAGGCAGAGAT  850

seq1  ATTTGTGT-GCCTCCTGGTATGCATCATAGTCCCTAATACCATATAG-TC  898
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  ATTTGTGTGGCCTCCTGGTATGCATCATAGTCCCTAATACCATATAGTTC  900

seq1  ACTGAACA-GTAGG-AAAAAAAAACGATAATG-TTTTTCATGAGAAGAT-  944
      |||||||| ||||| ||||||||||||||||| |||||||||||||||| 
seq2  ACTGAACAGGTAGGAAAAAAAAAACGATAATGTTTTTTCATGAGAAGATG  950

seq1  GGGCATAAT--CTCCTTTACAACCCATGTGCAAAAC-CTACAGT-AGAGT  990
      |||||||||  |||||||   ||||||||||||||| ||||||| |||||
seq2  GGGCATAATTCCTCCTTTTACACCCATGTGCAAAACTCTACAGTAAGAGT  1000


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