BAC Information

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BAC

Clone NameB6Ng01-239L03
Chromosome13 (Build37)
Map Location 24,659,868 - 24,816,659
singlet/doubletdoublet
Overlap gene5830431A10Rik, 6330500D04Rik
Upstream geneHist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
Downstream geneLOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239L03.bB6Ng01-239L03.g
ACCGA050053GA050054
length1,13296
definitionB6Ng01-239L03.b B6Ng01-239L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,659,868 - 24,660,990)(24,816,564 - 24,816,659)
sequence
gaattcccacacactagtattaatccttacccagtcctgccacctgatta
caggaagaaaattccattcacattaaccctcttggaccttttcaaaacag
aagacccaagtgtaaggtagacgcagttctacctgatggtgtaggcatac
tgacgtagcttgggagagacttgggagtgggcacagtctttcctatagga
taatatacatatagtgtgccttttgaacgcataagaaacaaggtcatcta
tggcctaaaagccaggggaaatgctgtctcattccacacacattcagccc
tttgtaggttgcttctttgggtttttggtttcccaaaatatagattgtgt
gggaaaggagaaaaccaaaggtctcagcaacatatggataaggtgtaaga
cagtggaaaaacaagagctggttatatctggctattaacatttaaagtta
atccaagcatgcttacacacctgtaattcttagaaagcaaaaccaggaag
attgaaaattcaaggcctcagtgggttatagagcaagaattttttaaata
aaaaaatagacaaaatgacaacaaatatgtaattttgagggtttgtttct
ttgttttgagatagggcctctcaacattgtcctggttgtcttggaattca
ttgtgtggaccaggctgaccttaaactcagagattcatcttcctctgcct
tcccagtgctaggattagagatatgcactaccaagtccagccattctgtg
ggccttaattaccattttacaattctagaatcagacagcaatctgaacct
caggtagttgagcatgctgcctccgtgcatgggtgggaaatatttatagc
cagagcaaaaatgaagtaaccagcagagcccggaagcggcgagcagagtc
aacagggctgggtacactcatatctgtcttgtgtgaacgtggttttagca
ttcgggtccacatcacttgttcaaggctcatccccttgtcgcaagagcgt
gtcaccaccacagtctccttacacatatgttaggatacagttcattctgc
aacagaaaaccaggccagagtttttagaaagagtacagggcagaaaagat
gaagccttccaattccaatattcattaccacc
ttttcgagctgggggcgggacgggtgaagaattggttcacaaagaagtct
tctgtttccacaagggactgcatttggggggttggggaggatggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24659868_24660990
seq2: B6Ng01-239L03.b_46_1177

seq1  GAATTCCCACACACTAGTATTAATCCTTACCCAGTCCTGCCACCTGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACACACTAGTATTAATCCTTACCCAGTCCTGCCACCTGATTA  50

seq1  CAGGAAGAAAATTCCATTCACATTAACCCTCTTGGACCTTTTCAAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAAAATTCCATTCACATTAACCCTCTTGGACCTTTTCAAAACAG  100

seq1  AAGACCCAAGTGTAAGGTAGACGCAGTTCTACCTGATGGTGTAGGCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAAGTGTAAGGTAGACGCAGTTCTACCTGATGGTGTAGGCATAC  150

seq1  TGACGTAGCTTGGGAGAGACTTGGGAGTGGGCACAGTCTTTCCTATAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTAGCTTGGGAGAGACTTGGGAGTGGGCACAGTCTTTCCTATAGGA  200

seq1  TAATATACATATAGTGTGCCTTTTGAACGCATAAGAAACAAGGTCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACATATAGTGTGCCTTTTGAACGCATAAGAAACAAGGTCATCTA  250

seq1  TGGCCTAAAAGCCAGGGGAAATGCTGTCTCATTCCACACACATTCAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAAAAGCCAGGGGAAATGCTGTCTCATTCCACACACATTCAGCCC  300

seq1  TTTGTAGGTTGCTTCTTTGGGTTTTTGGTTTCCCAAAATATAGATTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGTTGCTTCTTTGGGTTTTTGGTTTCCCAAAATATAGATTGTGT  350

seq1  GGGAAAGGAGAAAACCAAAGGTCTCAGCAACATATGGATAAGGTGTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGAGAAAACCAAAGGTCTCAGCAACATATGGATAAGGTGTAAGA  400

seq1  CAGTGGAAAAACAAGAGCTGGTTATATCTGGCTATTAACATTTAAAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAAAACAAGAGCTGGTTATATCTGGCTATTAACATTTAAAGTTA  450

seq1  ATCCAAGCATGCTTACACACCTGTAATTCTTAGAAAGCAAAACCAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCATGCTTACACACCTGTAATTCTTAGAAAGCAAAACCAGGAAG  500

seq1  ATTGAAAATTCAAGGCCTCAGTGGGTTATAGAGCAAGAATTTTTTAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAATTCAAGGCCTCAGTGGGTTATAGAGCAAGAATTTTTTAAATA  550

seq1  AAAAAATAGACAAAATGACAACAAATATGTAATTTTGAGGGTTTGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGACAAAATGACAACAAATATGTAATTTTGAGGGTTTGTTTCT  600

seq1  TTGTTTTGAGATAGGGCCTCTCAACATTGTCCTGGTTGTCTTGGAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGAGATAGGGCCTCTCAACATTGTCCTGGTTGTCTTGGAATTCA  650

seq1  TTGTGTGGACCAGGCTGACCTTAAACTCAGAGATTCATCTTCCTCTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGACCAGGCTGACCTTAAACTCAGAGATTCATCTTCCTCTGCCT  700

seq1  TCCCAGTGCTAGGATTAGAGATATGCACTACCAAGTCCAGCCATTCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGCTAGGATTAGAGATATGCACTACCAAGTCCAGCCATTCTGTG  750

seq1  GGCCTTAATTACCATTTTACAATTCTAGAATCAGACAGCAATCTGAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAATTACCATTTTACAATTCTAGAATCAGACAGCAATCTGAACCT  800

seq1  CAGGTAGTTGAGCATGCTGCCTCCGTGCATGGGTGGGAAATATTTATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGTTGAGCATGCTGCCTCCGTGCATGGGTGGGAAATATTTATAGC  850

seq1  CAGAGCAAAAATGAAGTAACCAGCAGAGCCCGGAAGCGGCGAGCAGAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAAAATGAAGTAACCAGCAGAGCCCGGAAGCGGCGAGCAGAGTC  900

seq1  AACAGGGCTGGGTACACTCATATCTGTCTTGTGTGAACGTGGTTTTAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCTGGGTACACTCATATCTGTCTTGTGTGAACGTGGTTTTAGCA  950

seq1  TTCGG--TCACATCACTTGTTCAAGGCTCATCCCCTTGTCGCAAGAGCGT  998
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGTCCACATCACTTGTTCAAGGCTCATCCCCTTGTCGCAAGAGCGT  1000

seq1  GTCAC--ACACAGTCTCCTTACACATATGTTAGGATACAGTTCATTCTGC  1046
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACCACAGTCTCCTTACACATATGTTAGGATACAGTTCATTCTGC  1050

seq1  -ACAGAAAAACCAGGCCAGAG--TTTAG-AAGAGTACAGGGCAGAAAAGA  1092
       |||| |||||||||||||||  ||||| |||||||||||||||||||||
seq2  AACAG-AAAACCAGGCCAGAGTTTTTAGAAAGAGTACAGGGCAGAAAAGA  1099

seq1  TGAAGC--TTCAATTCAATAAATCATTACCACC  1123
      ||||||  | |||||| |  | |||||||||||
seq2  TGAAGCCTTCCAATTCCAATATTCATTACCACC  1132

seq1: chr13_24816564_24816659
seq2: B6Ng01-239L03.g_70_165 (reverse)

seq1  TCCCATCCTCCCCAACCCCCCAAATGCAGTCCCTTGTGGAAACAGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCTCCCCAACCCCCCAAATGCAGTCCCTTGTGGAAACAGAAGAC  50

seq1  TTCTTTGTGAACCAATTCTTCACCCGTCCCGCCCCCAGCTCGAAAA  96
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGAACCAATTCTTCACCCGTCCCGCCCCCAGCTCGAAAA  96