BAC Information

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BAC

Clone NameB6Ng01-239O19
Chromosome13 (Build37)
Map Location 76,717,846 - 76,718,689
singlet/doubletsinglet
Overlap geneMctp1
Upstream geneLOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneLOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239O19.bB6Ng01-239O19.g
ACCGA050223GA050224
length1,243852
definitionB6Ng01-239O19.b B6Ng01-239O19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctacagctgaaaaacaacctcagcaaagtgactggggatgaaat
taactcaaacaaatcagtagccttcctctactcaaaggataaaatggctg
agaaagaaattagggaaacaacaccttttacaatagtcacaaataatata
aaatactttggtgtgtctctaacaaagcaagtgaaagatctgtgtaaaaa
gtacttcaagtctccaaaaaaagaaattgagatcccagaagatggaaagg
tcttccatggattggcaggattaatatagtaaaaatgggtatcttgctaa
aagcaatctatattcaatgcaatccccatcaaaatttcaactcaattctt
catagagttagaaagaacaatttgcaaattcattttgaataacaaacccc
ccagggtatcaaaatctactctcaacaataaaagaacttctaggggaatc
actatccctgaccttaagatgtattacagaactatagtgataagatctgt
atggttattggtacagagacaggcaggaagatcaatggaatagaattgaa
gacccagaaatgaacacatacacctatggtcacttgatctttgacaaaga
agctaaagcatccagtggaaaaagacaacattttcaacaaatggtgctgg
ttcaactggtagtcatcgtgtattgatgtgaattgatccatttttatctc
cttgtacaaagctcaagtccaagtggatcaagaaccttcacataaaacta
gatattctgaatctaatagaggagaaaatggagaaaagcttcaaacacat
gggtacaggggataatttcctgaacacaacaccaatggcttatgctctaa
gatcaagaatcgacaaatggggacctcataaaactgcaaagcttctgtaa
aggcaaggacactgtcaataggacaaaccagcaaccaacaattgggaaaa
gatctttaccaatcaatagagggcttatatccaatatatacaaagaactc
aagaagtagacaaatggctctcataaaacttgcaagccttatgttaaagc
caagcttatgtaagcaaaggacacctgtccgtagtacaaatagccaccaa
cagattgggaagattctcttccaattcctacttctggatagagctaattt
cgcaattatatacctaagagacctcgaagtgacctcggaacccgaattac
cctatattacaatttgtgatgatgactgtctctagacacgcag
gaattcaaatctgggctcattcttggtcaagtgacaccaagaagacgtgg
cttattgatttttgggtaataagacacccatatattattggtgacttggg
tttagtattaatgcattcaggctgtctatattgtggtgaaaaatctttaa
tacattacatctgtgaatcttggagtcttgtgtgaagaacgtgtgaggct
gtatgaggaacattaatacatcagtgaagcattttggagcaccaagcatg
aggggagaatagcttgaacccttatgagcatattgggaagatcccagaga
cacagacagatactcacccaagacagacacagggacagattcacaacatt
catgcaggcgtagatccagactcatataacagacagacagaggacagtgg
aagacatggagggatcaaatatgggttccctcttggtcaaatgataccat
gagaagtactttattgatttctgtcattaatgcaaaattgacacattatt
ggtgagatagatttattaccagtgcacacaaactgatcacaacaaacaac
tataatattgtgtgtataaatatatatgtatatatatatttatatgtata
aatatgtgtatttgtatgtataagaatatatacatatatctttaagaata
cacccacccccccccccacacacacacacacatcatcatcatcttttggg
aaatgtcaagttcacacatctttaatagttattaaatcagctcactgcaa
gagccagcaaatattttcttttgttcaatgtgtgacgtgattctcacttt
ttactgtggttttttgtcacagagaagaggctggatttgaaaagggtaaa
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76717846_76718689
seq2: B6Ng01-239O19.g_67_918

seq1  GAATTCAAATCTGGGCTCATTCTTGGTCAAGTGACACCAAGAAGACGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTGGGCTCATTCTTGGTCAAGTGACACCAAGAAGACGTGG  50

seq1  CTTATTGATTTTTGGGTAATAAGACACCCATATATTATTGGTGACTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGATTTTTGGGTAATAAGACACCCATATATTATTGGTGACTTGGG  100

seq1  TTTAGTATTAATGCATTCAGGCTGTCTATATTGTGGTGAAAAATCTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATTAATGCATTCAGGCTGTCTATATTGTGGTGAAAAATCTTTAA  150

seq1  TACATTACATCTGTGAATCTTGGAGTCTTGTGTGAAGAACGTGTGAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTACATCTGTGAATCTTGGAGTCTTGTGTGAAGAACGTGTGAGGCT  200

seq1  GTATGAGGAACATTAATACATCAGTGAAGCATTTTGGAGCACCAAGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGGAACATTAATACATCAGTGAAGCATTTTGGAGCACCAAGCATG  250

seq1  AGGGGAGAATAGCTTGAACCCTTATGAGCATATTGGGAAGATCCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAATAGCTTGAACCCTTATGAGCATATTGGGAAGATCCCAGAGA  300

seq1  CACAGACAGATACTCACCCAAGACAGACACAGGGACAGATTCACAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAGATACTCACCCAAGACAGACACAGGGACAGATTCACAACATT  350

seq1  CATGCAGGCGTAGATCCAGACTCATATAACAGACAGACAGAGGACAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGCGTAGATCCAGACTCATATAACAGACAGACAGAGGACAGTGG  400

seq1  AAGACATGGAGGGATCAAATATGGGTTCCCTCTTGGTCAAATGATACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGGAGGGATCAAATATGGGTTCCCTCTTGGTCAAATGATACCAT  450

seq1  GAGAAGTACTTTATTGATTTCTGTCATTAATGCAAAATTGACACATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTACTTTATTGATTTCTGTCATTAATGCAAAATTGACACATTATT  500

seq1  GGTGAGATAGATTTATTACCAGTGCACACAAACTGATCACAACAAACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATAGATTTATTACCAGTGCACACAAACTGATCACAACAAACAAC  550

seq1  TATAATATTGTGTGTATAAATATATATGTATATATATATTTATATGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTGTGTGTATAAATATATATGTATATATATATTTATATGTATA  600

seq1  AATATGTGTATTTGTATGTATAAGAATATATACATATATCTTTAAGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGTATTTGTATGTATAAGAATATATACATATATCTTTAAGAATA  650

seq1  CACCCA--CCCCCCCCCACACACACACACACATCATCATCATC-TTTGGG  697
      ||||||  ||||||||||||||||||||||||||||||||||| ||||||
seq2  CACCCACCCCCCCCCCCACACACACACACACATCATCATCATCTTTTGGG  700

seq1  AAATGTCAAGTTCACACATCTTTAATAG-TATTAAATCAGCTCACTGCAA  746
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  AAATGTCAAGTTCACACATCTTTAATAGTTATTAAATCAGCTCACTGC-A  749

seq1  AGAGCCAGCAAATATTTTCTTT--GTCCATGTGTGACGTGATTCTCACTT  794
      ||||||||||||||||||||||   || ||||||||||||||||||||||
seq2  AGAGCCAGCAAATATTTTCTTTTGTTCAATGTGTGACGTGATTCTCACTT  799

seq1  TTTACTGTGG-CTTTTGTCACAGAGAAGAGGCT-GATTAGAAAA-GGTAA  841
      ||||||||||  ||||||||||||||||||||| |||| ||||| |||||
seq2  TTTACTGTGGTTTTTTGTCACAGAGAAGAGGCTGGATTTGAAAAGGGTAA  849

seq1  ATA  844
      |||
seq2  ATA  852