BAC Information

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BAC

Clone NameB6Ng01-240B07
Chromosome13 (Build37)
Map Location 20,096,895 - 20,284,528
singlet/doubletdoublet
Overlap geneElmo1
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240B07.bB6Ng01-240B07.g
ACCGA050340GA050341
length1,1481,188
definitionB6Ng01-240B07.b B6Ng01-240B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,283,391 - 20,284,528)(20,096,895 - 20,098,079)
sequence
gaattcagctgtttttatttggagcttggtatctatcggttgcttttgac
caaacaatcaatgtttaaacaccttgagatttgcagcttcccgagctgaa
gatctggtttaatgtattcaaggagaaattttgattattggtttgagatt
tgcctaaaacatgagatgctccttctattctgtataacaggagaatgaga
tctggctgctaatagtggtggcatcattaggcagagagcagaatgtttcc
ctcacagagccatgtaagcaagaaaggacttaggaatactgccaattctt
ccttacaaaattggaaccctctcctggtaatacccaagggaaatgctaac
ttatttagtccaatcagtctccaccaagtccatattttaagcgccctgct
aatctgttgcccaggagcccacccacctcctgcatgctagcctgtctgag
cctgtagggcttgcatggcccggggggcagatcacctgtggtttttaaga
aaatggagtcttggctctcttcactcaacacgttcctgaagatgtcagtg
atagccatggagcaggcacacctatgatggtgtgtgttttcgttcaaacc
agactgccgtcactgggaagaatcactaaggaggaacacaatagatggag
aggcgatagcagaaccagccaacagagagacctagatttactaatgcctg
cctgcacagcttctccaacagtgctggattcaatgcagcaccttcctagc
agaattcctcctgggggcccagcggatgggcctgtgaataattatgaaaa
aggacacctttgtggaactttagggctgtaggaatctgacaaaactcgat
gcacagagcatgtatgctgcctggcacagtatatgttgactagatggcag
ccattattatttcctgttgctactgttacgggaatgacccacaaaactcc
tgaaatgccaaactctgaatgcactttactcaatttatgctcttttaaaa
agtctaatctaactcacattttcacctgctgaatataccttaaacaatac
tacaaaaaaacatgaataactggggtaaaaaaaacaacagcagtgtatac
attgtacccaaaaaacacaataatatctgtgatttcttcttggggaaa
gaattccaggacagccagggctacacagagaaaccctgtcttgaaaaaca
aacaaacaaaaaaatccttatgagattaaaggggcatgatctgaagacta
tcttcatagggcagaggcagtcttcctagacttcatattgtacttagtag
tattgaacttactagtattgaattagtagagagtttatattgctccacga
ggaaccaagcctttgtgacattctctccatgtccatgtggtcttataaag
aaaaagggccttctaagtacacattgctcctccataagcattctcaagga
agtttgatgctcctgatgcagtcattttgcccaaccaagagtttataatc
cactctcctggacaccagaaagaagctgacccagcgacataccaggtgcc
tatcttcttggaggaattgtcgctgcctcccaagagatctaaacatattc
aaaggaagtggcctttgcctcacctggactcctgagaatggtagctaaac
ctaataaccagctgttattatcaaagaattgacaaaaaattgtcttaaaa
tcagtgcgtcagctgtatctcatgggacaggaaagcacaccctgacaaaa
aggatactcagagggtggggcttaaaggaaacattctgacaggtggtaca
tgatgtaggatgtcataagaacaacctcttacatgggcctctccatcccc
acaggatccagaagcagcgaatttaccttgggaagactgcagctgccctg
tttccaagtatctcgtagtcttggcagataccttataggatgactagagg
cttctccaaatgaaaagagctacagaagtgactagggcattgctgacaga
aataatccccaaattaggctttataaaagtctccagagtggcaatggact
tgttatcaaggcgtaaattactcagggtttgaaaagcattgggtattcag
tatcttcctacattggtttctgggaagccacatcctgtggaaggtagaaa
agacttatgatctccaaggagaaacctaaggaactaattcaagaaatgag
tctcatgggctactcttatggactgtggctgctcagaacaatagaaaata
atattctgattgccagatcctcatgtttctttaaagtctacatagcagcc
tttcctcactatgactatggtagactctctggaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20283391_20284528
seq2: B6Ng01-240B07.b_46_1193 (reverse)

seq1  TTTCCCC-AGAAGAAA-CACAGATAT--ATGTGTTTTTTGGGTAACCATG  46
      ||||||| |||||||| |||||||||   |||||||||||||| || |||
seq2  TTTCCCCAAGAAGAAATCACAGATATTATTGTGTTTTTTGGGT-ACAATG  49

seq1  TATACACTGC--CTGTGTTTTTTTCCCCAGTTA-TCATG--TTTTTGTAG  91
      ||||||||||   ||| |||||| ||||||||| |||||  |||||||||
seq2  TATACACTGCTGTTGTTTTTTTTACCCCAGTTATTCATGTTTTTTTGTAG  99

seq1  TA-TGTTTAAGGTATAATTCAGCAGGTGAAAATGTGAGTTAGATTAGACT  140
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTGTTTAAGGTAT-ATTCAGCAGGTGAAAATGTGAGTTAGATTAGACT  148

seq1  TTTTAAAAGAGCATTAATTGAGTAAAGTGCATTCAGAGTTTGGCATTTCA  190
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGAGCATAAATTGAGTAAAGTGCATTCAGAGTTTGGCATTTCA  198

seq1  GG-GTTTTGTGGGTCATTCCCGTAACAGTAGCAACAGG-AATAATAATGG  238
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGAGTTTTGTGGGTCATTCCCGTAACAGTAGCAACAGGAAATAATAATGG  248

seq1  CTGCCATCTAGTCAACATATACTGTGCCAGGCAGCATACATGCTCTGTGC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATCTAGTCAACATATACTGTGCCAGGCAGCATACATGCTCTGTGC  298

seq1  ATCGAGTTTTGTCAGATTCCTACAGCCCTAAAGTTCCACAAAGGTGTCCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAGTTTTGTCAGATTCCTACAGCCCTAAAGTTCCACAAAGGTGTCCT  348

seq1  TTTTCATAATTATTCACAGGCCCATCCGCTGGGCCCCCAGGAGGAATTCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAATTATTCACAGGCCCATCCGCTGGGCCCCCAGGAGGAATTCT  398

seq1  GCTAGGAAGGTGCTGCATTGAATCCAGCACTGTTGGAGAAGCTGTGCAGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAGGTGCTGCATTGAATCCAGCACTGTTGGAGAAGCTGTGCAGG  448

seq1  CAGGCATTAGTAAATCTAGGTCTCTCTGTTGGCTGGTTCTGCTATCGCCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTAGTAAATCTAGGTCTCTCTGTTGGCTGGTTCTGCTATCGCCT  498

seq1  CTCCATCTATTGTGTTCCTCCTTAGTGATTCTTCCCAGTGACGGCAGTCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTATTGTGTTCCTCCTTAGTGATTCTTCCCAGTGACGGCAGTCT  548

seq1  GGTTTGAACGAAAACACACACCATCATAGGTGTGCCTGCTCCATGGCTAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAACGAAAACACACACCATCATAGGTGTGCCTGCTCCATGGCTAT  598

seq1  CACTGACATCTTCAGGAACGTGTTGAGTGAAGAGAGCCAAGACTCCATTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACATCTTCAGGAACGTGTTGAGTGAAGAGAGCCAAGACTCCATTT  648

seq1  TCTTAAAAACCACAGGTGATCTGCCCCCCGGGCCATGCAAGCCCTACAGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAACCACAGGTGATCTGCCCCCCGGGCCATGCAAGCCCTACAGG  698

seq1  CTCAGACAGGCTAGCATGCAGGAGGTGGGTGGGCTCCTGGGCAACAGATT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAGGCTAGCATGCAGGAGGTGGGTGGGCTCCTGGGCAACAGATT  748

seq1  AGCAGGGCGCTTAAAATATGGACTTGGTGGAGACTGATTGGACTAAATAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCGCTTAAAATATGGACTTGGTGGAGACTGATTGGACTAAATAA  798

seq1  GTTAGCATTTCCCTTGGGTATTACCAGGAGAGGGTTCCAATTTTGTAAGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATTTCCCTTGGGTATTACCAGGAGAGGGTTCCAATTTTGTAAGG  848

seq1  AAGAATTGGCAGTATTCCTAAGTCCTTTCTTGCTTACATGGCTCTGTGAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGGCAGTATTCCTAAGTCCTTTCTTGCTTACATGGCTCTGTGAG  898

seq1  GGAAACATTCTGCTCTCTGCCTAATGATGCCACCACTATTAGCAGCCAGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATTCTGCTCTCTGCCTAATGATGCCACCACTATTAGCAGCCAGA  948

seq1  TCTCATTCTCCTGTTATACAGAATAGAAGGAGCATCTCATGTTTTAGGCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTCCTGTTATACAGAATAGAAGGAGCATCTCATGTTTTAGGCA  998

seq1  AATCTCAAACCAATAATCAAAATTTCTCCTTGAATACATTAAACCAGATC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAACCAATAATCAAAATTTCTCCTTGAATACATTAAACCAGATC  1048

seq1  TTCAGCTCGGGAAGCTGCAAATCTCAAGGTGTTTAAACATTGATTGTTTG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCGGGAAGCTGCAAATCTCAAGGTGTTTAAACATTGATTGTTTG  1098

seq1  GTCAAAAGCAACCGATAGATACCAAGCTCCAAATAAAAACAGCTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAGCAACCGATAGATACCAAGCTCCAAATAAAAACAGCTGAATTC  1148

seq1: chr13_20096895_20098079
seq2: B6Ng01-240B07.g_67_1254

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACA  50

seq1  AACAAACAAAAAAATCCTTATGAGATTAAAGGGGCATGATCTGAAGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAAATCCTTATGAGATTAAAGGGGCATGATCTGAAGACTA  100

seq1  TCTTCATAGGGCAGAGGCAGTCTTCCTAGACTTCATATTGTACTTAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATAGGGCAGAGGCAGTCTTCCTAGACTTCATATTGTACTTAGTAG  150

seq1  TATTGAACTTACTAGTATTGAATTAGTAGAGAGTTTATATTGCTCCACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACTTACTAGTATTGAATTAGTAGAGAGTTTATATTGCTCCACGA  200

seq1  GGAACCAAGCCTTTGTGACATTCTCTCCATGTCCATGTGGTCTTATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAAGCCTTTGTGACATTCTCTCCATGTCCATGTGGTCTTATAAAG  250

seq1  AAAAAGGGCCTTCTAAGTACACATTGCTCCTCCATAAGCATTCTCAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGCCTTCTAAGTACACATTGCTCCTCCATAAGCATTCTCAAGGA  300

seq1  AGTTTGATGCTCCTGATGCAGTCATTTTGCCCAACCAAGAGTTTATAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGCTCCTGATGCAGTCATTTTGCCCAACCAAGAGTTTATAATC  350

seq1  CACTCTCCTGGACACCAGAAAGAAGCTGACCCAGCGACATACCAGGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCTGGACACCAGAAAGAAGCTGACCCAGCGACATACCAGGTGCC  400

seq1  TATCTTCTTGGAGGAATTGTCGCTGCCTCCCAAGAGATCTAAACATATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTTGGAGGAATTGTCGCTGCCTCCCAAGAGATCTAAACATATTC  450

seq1  AAAGGAAGTGGCCTTTGCCTCACCTGGACTCCTGAGAATGGTAGCTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGTGGCCTTTGCCTCACCTGGACTCCTGAGAATGGTAGCTAAAC  500

seq1  CTAATAACCAGCTGTTATTATCAAAGAATTGACAAAAAATTGTCTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACCAGCTGTTATTATCAAAGAATTGACAAAAAATTGTCTTAAAA  550

seq1  TCAGTGCGTCAGCTGTATCTCATGGGACAGGAAAGCACACCCTGACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCGTCAGCTGTATCTCATGGGACAGGAAAGCACACCCTGACAAAA  600

seq1  AGGATACTCAGAGGGTGGGGCTTAAAGGAAACATTCTGACAGGTGGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTCAGAGGGTGGGGCTTAAAGGAAACATTCTGACAGGTGGTACA  650

seq1  TGATGTAGGATGTCATAAGAACAACCTCTTACATGGGCCTCTCCATCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAGGATGTCATAAGAACAACCTCTTACATGGGCCTCTCCATCCCC  700

seq1  ACAGGATCCAGAAGCAGCGAATTTACCTTGGGAAGACTGCAGCTGCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCCAGAAGCAGCGAATTTACCTTGGGAAGACTGCAGCTGCCCTG  750

seq1  TTTCCAAGTATCTCGTAGTCTTGGCAGATACCTTATAGGATGACTAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGTATCTCGTAGTCTTGGCAGATACCTTATAGGATGACTAGAGG  800

seq1  CTTCTCCAAATGAAAAGAGCTACAGAAGTGACTAGGGCATTGCTGACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAAATGAAAAGAGCTACAGAAGTGACTAGGGCATTGCTGACAGA  850

seq1  AATAATCCCCAAATTAGGCTTTATAAAAGTCTCCAGAGTGGCAATGGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCCCCAAATTAGGCTTTATAAAAGTCTCCAGAGTGGCAATGGACT  900

seq1  TGTTATCAAGGCGTAAATTACTCAGGGTTTGAAAAGCATTGGGTATTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCAAGGCGTAAATTACTCAGGGTTTGAAAAGCATTGGGTATTCAG  950

seq1  TATCTT-CTACATT-GTTTCT-GGAAGCCACATCCTGTGGGAAGGTAGAA  997
      |||||| ||||||| |||||| |||||||||||||||| |||||||||||
seq2  TATCTTCCTACATTGGTTTCTGGGAAGCCACATCCTGT-GGAAGGTAGAA  999

seq1  AAGACTAATGATCTCCCAAGGAGAAACCTAAGGGAACTAATTCAAGAAAT  1047
      |||||| ||||||| |||||||||||||||| ||||||||||||||||||
seq2  AAGACTTATGATCT-CCAAGGAGAAACCTAA-GGAACTAATTCAAGAAAT  1047

seq1  GAAGTCTCCATGGGTTACTC-TATTGACTGTGGCCTTGCTCAGA--CATA  1094
      | ||||| |||||| ||||| ||| |||||||||  ||||||||   |||
seq2  G-AGTCT-CATGGGCTACTCTTATGGACTGTGGC--TGCTCAGAACAATA  1093

seq1  GAAA--TATA-TCTGATTGCCAAGAT-CTCATGTCTTTTAAAGGTCTACA  1140
      ||||   ||| |||||||||| |||| ||||||| | || || |||||||
seq2  GAAAATAATATTCTGATTGCC-AGATCCTCATGTTTCTTTAAAGTCTACA  1142

seq1  TAGCAGGCCTTTCCTCACTAATGACTATGTTAGACTCT---GAAACAA  1185
      ||||| ||||||||||||| ||||||||| ||||||||   |||||||
seq2  TAGCA-GCCTTTCCTCACT-ATGACTATGGTAGACTCTCTGGAAACAA  1188