BAC Information

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BAC

Clone NameB6Ng01-240B15
Chromosome13 (Build37)
Map Location 45,675,456 - 45,848,674
singlet/doubletdoublet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240B15.bB6Ng01-240B15.g
ACCGA050356GA050357
length937961
definitionB6Ng01-240B15.b B6Ng01-240B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,675,456 - 45,676,392)(45,847,715 - 45,848,674)
sequence
gaattccaagggttcctgatgccaagacatagtttgtcaatctctaaaga
gttaaacacagacttgttccataactgagcaattctatgtctatagaaca
cctctgatggttagtcttcattgtcaacttactggatttggaattgcaga
tacatttctatgtgtgtgcttccagagaggtttaactgaggaaagacaac
ccataccaaatgcgggtggcattattccatggtctagggtctgaagatga
atgagaaagaaaaggaagaagaagtgagctaaggaccagcattcatctgg
cccagctccccgagtgtgaacaacgtgacctcacgctcctgccaccatgg
ctacaacgtctcagtcttcctttccatggtagactgtgtgctttcttcag
gcatttttgtcccagtgataggacaagaaactagtctagtacctgaaaac
cattcaaagaaatcaactcagatactagaacccaatgttcacagcagcgt
tatttataatagccagaatcagtgtgccaacccaaacgtccatcaacagg
gaccaaggagcagtggggtatgctccctcatcatactaccacccaccccc
cccccattcctgacagagggctgaaattctgattctgatactcatctgta
gtgcagatgagtcccaagccgttgtgccaagggaaaggagctgtaccccc
aaagaactttatctggtttgacttacatgaaacaccaaataagggtagcg
tccagtaggggttggggagaagagtcaatgaatgctcaggggacagggac
gcagtctggaatgctgggaggtcggctgccaacactgcaatatttaatgc
ccctaggccgaaaggcttggaatagtttaaagactacattttttgttgtt
gtttttcttttcgttttgttttgtttttgtttttgtt
gaattccttgggcattggtgacatgttccatgagataacattcatctcca
taggagctggctttccttgctttctattcctgaaataactagtgtcactt
gctaaactatgtccccacacaatgttagatccctaacccctagcaccccc
aacatccctagtaccatgtatgaggtctttttggaagtagagtgttcaca
tctgagcaagtaagcatgaggcccctgttctgatgaaaggagacaatttg
tgaaggaagacatcaggttgccctgagtctcagaatattggagatggcaa
gaagaccgtggaagttaggaagaggcatggggcagcctgcctcccagtat
tcttgctcctagaaagtacatgatgagaagacttgctgagacctcattac
agacccccatttcctaagacaactagacgatgcacttccattgttgaaac
cacctagtttgtggcctttcattatgacctcaggaaatcagcccatgttg
gctggccagttttctgtacccaacttttgtctctctgactcgtggcttta
tgggtgctcctgcacatcgtatgcaggacttggcagcatacactgcaaga
gatgatacttcctgtggtttggcttctgaaagcaaatgcattaaagtcta
atcttaagccttgggggttattcagaaccgggcttcttcatgttataatt
acctcactctgccatcctttcccctaagactacacctttgagtgtttgag
gaacggaaggaaggaggacagttgaacagcagaggtttaaagctcactta
tgcaaagcccttcattttctgattctctctgcaggcttgggcatttcttg
tgaagatttggcatctattgtaagcctgctttcctggggagtatggcaag
cctgtaaaggagagaagggatctctctctctctctctctctctctctctc
tctctctcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45675456_45676392
seq2: B6Ng01-240B15.b_45_981

seq1  GAATTCCAAGGGTTCCTGATGCCAAGACATAGTTTGTCAATCTCTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGTTCCTGATGCCAAGACATAGTTTGTCAATCTCTAAAGA  50

seq1  GTTAAACACAGACTTGTTCCATAACTGAGCAATTCTATGTCTATAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACACAGACTTGTTCCATAACTGAGCAATTCTATGTCTATAGAACA  100

seq1  CCTCTGATGGTTAGTCTTCATTGTCAACTTACTGGATTTGGAATTGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGATGGTTAGTCTTCATTGTCAACTTACTGGATTTGGAATTGCAGA  150

seq1  TACATTTCTATGTGTGTGCTTCCAGAGAGGTTTAACTGAGGAAAGACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCTATGTGTGTGCTTCCAGAGAGGTTTAACTGAGGAAAGACAAC  200

seq1  CCATACCAAATGCGGGTGGCATTATTCCATGGTCTAGGGTCTGAAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCAAATGCGGGTGGCATTATTCCATGGTCTAGGGTCTGAAGATGA  250

seq1  ATGAGAAAGAAAAGGAAGAAGAAGTGAGCTAAGGACCAGCATTCATCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAGAAAAGGAAGAAGAAGTGAGCTAAGGACCAGCATTCATCTGG  300

seq1  CCCAGCTCCCCGAGTGTGAACAACGTGACCTCACGCTCCTGCCACCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCCCCGAGTGTGAACAACGTGACCTCACGCTCCTGCCACCATGG  350

seq1  CTACAACGTCTCAGTCTTCCTTTCCATGGTAGACTGTGTGCTTTCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACGTCTCAGTCTTCCTTTCCATGGTAGACTGTGTGCTTTCTTCAG  400

seq1  GCATTTTTGTCCCAGTGATAGGACAAGAAACTAGTCTAGTACCTGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTGTCCCAGTGATAGGACAAGAAACTAGTCTAGTACCTGAAAAC  450

seq1  CATTCAAAGAAATCAACTCAGATACTAGAACCCAATGTTCACAGCAGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAAGAAATCAACTCAGATACTAGAACCCAATGTTCACAGCAGCGT  500

seq1  TATTTATAATAGCCAGAATCAGTGTGCCAACCCAAACGTCCATCAACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAATAGCCAGAATCAGTGTGCCAACCCAAACGTCCATCAACAGG  550

seq1  GACCAAGGAGCAGTGGGGTATGCTCCCTCATCATACTACCACCCACCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGAGCAGTGGGGTATGCTCCCTCATCATACTACCACCCACCCCC  600

seq1  CCCCCATTCCTGACAGAGGGCTGAAATTCTGATTCTGATACTCATCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATTCCTGACAGAGGGCTGAAATTCTGATTCTGATACTCATCTGTA  650

seq1  GTGCAGATGAGTCCCAAGCCGTTGTGCCAAGGGAAAGGAGCTGTACCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATGAGTCCCAAGCCGTTGTGCCAAGGGAAAGGAGCTGTACCCCC  700

seq1  AAAGAACTTTATCTGGTTTGACTTACATGAAACACCAAATAAGGGTAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTTTATCTGGTTTGACTTACATGAAACACCAAATAAGGGTAGCG  750

seq1  TCCAGTAGGGGTTGGGGAGAAGAGTCAATGAATGCTCAGGGGACAGGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAGGGGTTGGGGAGAAGAGTCAATGAATGCTCAGGGGACAGGGAC  800

seq1  GCAGTCTGGAATGCTGGGAGGTCGGCTGCCAACACTGCAATATTTAATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTGGAATGCTGGGAGGTCGGCTGCCAACACTGCAATATTTAATGC  850

seq1  CCCTAGGCCG-AAGGCTTGGAATAGTTTAAAGACTACATTTTTTGTTGTT  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGCCGAAAGGCTTGGAATAGTTTAAAGACTACATTTTTTGTTGTT  900

seq1  GTTTTTCTTTTCGTTTTGTTTTTGTTTTTGTTTTTGTT  937
      |||||||||||||||||| |||||||||||||||||||
seq2  GTTTTTCTTTTCGTTTTG-TTTTGTTTTTGTTTTTGTT  937

seq1: chr13_45847715_45848674
seq2: B6Ng01-240B15.g_67_1027 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCCTTCTC  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCCTTCTC  50

seq1  TCC-TTACAGGCTTGCCATACTCCCCAGGAAAGCAGGCTTACAATAGATG  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACAGGCTTGCCATACTCCCCAGGAAAGCAGGCTTACAATAGATG  100

seq1  CCAAATCTTCACAAGAAATGCCCAAGCCTGCAGAGAGAATCAGAAAATGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTTCACAAGAAATGCCCAAGCCTGCAGAGAGAATCAGAAAATGA  150

seq1  AGGGCTTTGCATAAGTGAGCTTTAAACCTCTGCTGTTCAACTGTCCTCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTGCATAAGTGAGCTTTAAACCTCTGCTGTTCAACTGTCCTCCT  200

seq1  TCCTTCCGTTCCTCAAACACTCAAAGGTGTAGTCTTAGGGGAAAGGATGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCGTTCCTCAAACACTCAAAGGTGTAGTCTTAGGGGAAAGGATGG  250

seq1  CAGAGTGAGGTAATTATAACATGAAGAAGCCCGGTTCTGAATAACCCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGGTAATTATAACATGAAGAAGCCCGGTTCTGAATAACCCCCA  300

seq1  AGGCTTAAGATTAGACTTTAATGCATTTGCTTTCAGAAGCCAAACCACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAAGATTAGACTTTAATGCATTTGCTTTCAGAAGCCAAACCACAG  350

seq1  GAAGTATCATCTCTTGCAGTGTATGCTGCCAAGTCCTGCATACGATGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCATCTCTTGCAGTGTATGCTGCCAAGTCCTGCATACGATGTGC  400

seq1  AGGAGCACCCATAAAGCCACGAGTCAGAGAGACAAAAGTTGGGTACAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACCCATAAAGCCACGAGTCAGAGAGACAAAAGTTGGGTACAGAA  450

seq1  AACTGGCCAGCCAACATGGGCTGATTTCCTGAGGTCATAATGAAAGGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCCAGCCAACATGGGCTGATTTCCTGAGGTCATAATGAAAGGCCA  500

seq1  CAAACTAGGTGGTTTCAACAATGGAAGTGCATCGTCTAGTTGTCTTAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAGGTGGTTTCAACAATGGAAGTGCATCGTCTAGTTGTCTTAGGA  550

seq1  AATGGGGGTCTGTAATGAGGTCTCAGCAAGTCTTCTCATCATGTACTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGTCTGTAATGAGGTCTCAGCAAGTCTTCTCATCATGTACTTTC  600

seq1  TAGGAGCAAGAATACTGGGAGGCAGGCTGCCCCATGCCTCTTCCTAACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCAAGAATACTGGGAGGCAGGCTGCCCCATGCCTCTTCCTAACTT  650

seq1  CCACGGTCTTCTTGCCATCTCCAATATTCTGAGACTCAGGGCAACCTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTCTTCTTGCCATCTCCAATATTCTGAGACTCAGGGCAACCTGAT  700

seq1  GTCTTCCTTCACAAATTGTCTCCTTTCATCAGAACAGGGGCCTCATGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTTCACAAATTGTCTCCTTTCATCAGAACAGGGGCCTCATGCTT  750

seq1  ACTTGCTCAGATGTGAACACTCTACTTCCAAAAAGACCTCATACATGGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCAGATGTGAACACTCTACTTCCAAAAAGACCTCATACATGGTA  800

seq1  CTAGGGATGTTGGGGGTGCTAGGGGTTAGGGATCTAACATTGTGTGGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGATGTTGGGGGTGCTAGGGGTTAGGGATCTAACATTGTGTGGGGA  850

seq1  CATAGTTTAGCAAGTGACACTAGTTATTTCAGGAATAGAAAGCAAGGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTAGCAAGTGACACTAGTTATTTCAGGAATAGAAAGCAAGGAAA  900

seq1  GCCAGCTCCTATGGAGATGAATGTTATCTCATGGAACATGTCACCAATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCCTATGGAGATGAATGTTATCTCATGGAACATGTCACCAATGC  950

seq1  CCAAGGAATTC  960
      |||||||||||
seq2  CCAAGGAATTC  961