BAC Information

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BAC

Clone NameB6Ng01-240G09
Chromosome13 (Build37)
Map Location 16,635,930 - 16,747,283
singlet/doubletdoublet
Overlap geneLOC665191
Upstream geneGli3, LOC665157, Inhba, LOC625181
Downstream gene5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240G09.bB6Ng01-240G09.g
ACCGA050580GA050581
length1,1991,109
definitionB6Ng01-240G09.b B6Ng01-240G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,746,085 - 16,747,283)(16,635,930 - 16,637,055)
sequence
gaattctcaaaagtaaactgtagtagctgctctctgtgaatacgcatgtg
tagctttgttcttacttgctcattttgatatactacttagcaaggaaccc
caaattcctgtagaaaatagacatgaactgagcttgttgggctttccaaa
gcaaatcatctgaattgggtgtctgtctttatctgaaaagaaaagaatga
aaaccatctactctctcatggtttactggattctgtgatgtcagaaatct
gcatttgcacagcatgtatgagttagagtttataataccaccatattgat
caagcaagatcagaacagtcactccaccaactatttttatgttgatctgt
tcattttggccatccaaagcagcacaatcaattggactaaccatttgaga
tacaatttggctagtaagaaagccaaaacaccagattggcttcttttttt
aattggtgtttttcacgatatgaaaatattgggtgaaaatgaaaaaactg
agtcaaagatccagatgtttgatccgcctgttgccaaatagccacacatt
ttgtagcattcacatttgcaactgaatttctcagttttcaccagaaaggc
tgtcatcatatagatatagtctaagaggaactgtaaacatgtaacggata
tggtcccaagaaaaggatctcttttacccaagatgacagttgcttgtgca
tctgctgttttcttctcactagacagttttctggacagaaaggggacagc
gtccattgttcaaaacctataccattctctttatctagactcaattctac
cttgaaagaagttgaattatagtcatgacaagaactgtttctttcctgaa
ctggtctactatataactcagataaagattcaaaagctgtgcctccaaaa
atgacaaggtagaacccagaaccatttcttcagcattggctgattcatta
cattctgaccaggcttcttctaagcactggaatagtgtatgtaatgctct
tctgcatatcctaatccaggtgttaatagagtacattcaagtgagcttat
caaaatagagttttgcttggagtagaatctgaaaagtaaagacctttaag
ttagaaatgctgcctataattccttacttttgaatgaactaaacatttgt
tacaccttagctctctcacatccagccaccataattcgaagtcacaacc

gaattctaaccataagctattttcaaaactcagttttaaattagtgggca
atgatggagtttctttcaaaagtggcatctttaaagctagatctggacaa
ggaggcatggagttgcccctctgacagaaggaaagggatgaaggatgaac
caacagggacgatcggtgaggtggcagaagcatgtgctagggggattata
ggcattacttatgtggggaaagacaggctttcaggctattttaaatcagg
aaaacataccaaggtgtttgagataacaatttgtatttatttactcaaga
agccactagttttaatagcctaataatcaatgtatgtaattcttatcgcc
atctgataaagatgttatttttctgattctgttttataaatggaaaaaaa
agtaacaaggcttagaatttgattgacctacttgatgtgctgaaggaata
aatctgcagtctttcttcagattgttctcagttgaataatcaataatgga
ttggaccaggacactttcagaagtataatgctgagctctggagaattact
ctaggatttagggttgtgctgggcaaactggaatatataaccttcctgat
caaactgttttcttaataaataagatttttaaatgtgtcttaaagtcttt
tgagaaaataaaccacaggaatgcacatagatatatgatgacagaattta
ttgtggaaattttctgatggttgggaaaccctgctgctaagatcaaaacc
tgacattaccagaaagccctgagcttggtgcaaaatggtgaactcccttt
gtctttagggatttctcttctctacctgggaatcctggatgctaccctga
ctacctgaggaacatccggcaaacatctggcaaagctgcacctgagatcc
ctggaatgcctccccatgctaatgaggcatcgcatagcttagccttcggc
ccagcctagattttctcacccacgtcacaaactatgtaccttggttcaca
cagataagtatatgcacacagctgttttgtgatactgtctgagagagctt
gttcacctgacatctctaaagagctgcacatcaggatgtcacactgagat
atcgggaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_16746085_16747283
seq2: B6Ng01-240G09.b_43_1241 (reverse)

seq1  GGTTGTGACTTTGAATTAATGTGTGCCTGGATGTAGAAGAAGCTAAG--T  48
      ||||||||||| ||||| ||| ||| |||||||| ||   |||||||   
seq2  GGTTGTGACTTCGAATT-ATG-GTGGCTGGATGT-GAGAGAGCTAAGGTG  47

seq1  AAACAAATG-TTAG-TCATCAAAAAGT-AGGAA-TATA-GCAGCATTTCT  93
       |||||||| |||| ||||  |||||| ||||| |||| |||||||||||
seq2  TAACAAATGTTTAGTTCATTCAAAAGTAAGGAATTATAGGCAGCATTTCT  97

seq1  AATTTAAAGGTC-TTAC-TCTCAGGATCTACTCCAAAGGCAAAACTCTAT  141
      || ||||||||| |||| | ||||  ||||||||||  ||||||||||| 
seq2  AACTTAAAGGTCTTTACTTTTCAGATTCTACTCCAA--GCAAAACTCTA-  144

seq1  TTTTGATAAGCTCACTTGAAATGTACTCTATTAACACCTGGATTTAGGAT  191
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  TTTTGATAAGCTCACTTG-AATGTACTCTATTAACACCTGGA-TTAGGAT  192

seq1  ATGCAGAAGAGCATTACATACACTATTCCAGTGCTTAGAAGAAGCCCTGG  241
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGCAGAAGAGCATTACATACACTATTCCAGTGCTTAGAAGAAG-CCTGG  241

seq1  TCAGAATGTAATGAATCAGCCAATGCTGAAGAAATGGTTCTGGGTTCTAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGTAATGAATCAGCCAATGCTGAAGAAATGGTTCTGGGTTCTAC  291

seq1  CTTGTCATTTTTGGAGGCACAGCTTTTGAATCTTTATCTGAGTTATATAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCATTTTTGGAGGCACAGCTTTTGAATCTTTATCTGAGTTATATAG  341

seq1  TAGACCAGTTCAGGAAAGAAACAGTTCTTGTCATGACTATAATTCAACTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGTTCAGGAAAGAAACAGTTCTTGTCATGACTATAATTCAACTT  391

seq1  CTTTCAAGGTAGAATTGAGTCTAGATAAAGAGAATGGTATAGGTTTTGAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGGTAGAATTGAGTCTAGATAAAGAGAATGGTATAGGTTTTGAA  441

seq1  CAATGGACGCTGTCCCCTTTCTGTCCAGAAAACTGTCTAGTGAGAAGAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGACGCTGTCCCCTTTCTGTCCAGAAAACTGTCTAGTGAGAAGAAA  491

seq1  ACAGCAGATGCACAAGCAACTGTCATCTTGGGTAAAAGAGATCCTTTTCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGATGCACAAGCAACTGTCATCTTGGGTAAAAGAGATCCTTTTCT  541

seq1  TGGGACCATATCCGTTACATGTTTACAGTTCCTCTTAGACTATATCTATA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCATATCCGTTACATGTTTACAGTTCCTCTTAGACTATATCTATA  591

seq1  TGATGACAGCCTTTCTGGTGAAAACTGAGAAATTCAGTTGCAAATGTGAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACAGCCTTTCTGGTGAAAACTGAGAAATTCAGTTGCAAATGTGAA  641

seq1  TGCTACAAAATGTGTGGCTATTTGGCAACAGGCGGATCAAACATCTGGAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAAAATGTGTGGCTATTTGGCAACAGGCGGATCAAACATCTGGAT  691

seq1  CTTTGACTCAGTTTTTTCATTTTCACCCAATATTTTCATATCGTGAAAAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTCAGTTTTTTCATTTTCACCCAATATTTTCATATCGTGAAAAA  741

seq1  CACCAATTAAAAAAAGAAGCCAATCTGGTGTTTTGGCTTTCTTACTAGCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATTAAAAAAAGAAGCCAATCTGGTGTTTTGGCTTTCTTACTAGCC  791

seq1  AAATTGTATCTCAAATGGTTAGTCCAATTGATTGTGCTGCTTTGGATGGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTATCTCAAATGGTTAGTCCAATTGATTGTGCTGCTTTGGATGGC  841

seq1  CAAAATGAACAGATCAACATAAAAATAGTTGGTGGAGTGACTGTTCTGAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAACAGATCAACATAAAAATAGTTGGTGGAGTGACTGTTCTGAT  891

seq1  CTTGCTTGATCAATATGGTGGTATTATAAACTCTAACTCATACATGCTGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGATCAATATGGTGGTATTATAAACTCTAACTCATACATGCTGT  941

seq1  GCAAATGCAGATTTCTGACATCACAGAATCCAGTAAACCATGAGAGAGTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCAGATTTCTGACATCACAGAATCCAGTAAACCATGAGAGAGTA  991

seq1  GATGGTTTTCATTCTTTTCTTTTCAGATAAAGACAGACACCCAATTCAGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTTCATTCTTTTCTTTTCAGATAAAGACAGACACCCAATTCAGA  1041

seq1  TGATTTGCTTTGGAAAGCCCAACAAGCTCAGTTCATGTCTATTTTCTACA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCTTTGGAAAGCCCAACAAGCTCAGTTCATGTCTATTTTCTACA  1091

seq1  GGAATTTGGGGTTCCTTGCTAAGTAGTATATCAAAATGAGCAAGTAAGAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGGGGTTCCTTGCTAAGTAGTATATCAAAATGAGCAAGTAAGAA  1141

seq1  CAAAGCTACACATGCGTATTCACAGAGAGCAGCTACTACAGTTTACTTTT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTACACATGCGTATTCACAGAGAGCAGCTACTACAGTTTACTTTT  1191

seq1  GAGAATTC  1199
      ||||||||
seq2  GAGAATTC  1199


seq1: chr13_16635930_16637055
seq2: B6Ng01-240G09.g_62_1170

seq1  GAATTCTAACCATAAGCTATTTTCAAAACTCAGTTTTAAATTAGTGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCATAAGCTATTTTCAAAACTCAGTTTTAAATTAGTGGGCA  50

seq1  ATGATGGAGTTTCTTTCAAAAGTGGCATCTTTAAAGCTAGATCTGGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGAGTTTCTTTCAAAAGTGGCATCTTTAAAGCTAGATCTGGACAA  100

seq1  GGAGGCATGGAGTTGCCCCTCTGACAGAAGGAAAGGGATGAAGGATGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATGGAGTTGCCCCTCTGACAGAAGGAAAGGGATGAAGGATGAAC  150

seq1  CAACAGGGACGATCGGTGAGGTGGCAGAAGCATGTGCTAGGGGGATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGACGATCGGTGAGGTGGCAGAAGCATGTGCTAGGGGGATTATA  200

seq1  GGCATTACTTATGTGGGGAAAGACAGGCTTTCAGGCTATTTTAAATCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTACTTATGTGGGGAAAGACAGGCTTTCAGGCTATTTTAAATCAGG  250

seq1  AAAACATACCAAGGTGTTTGAGATAACAATTTGTATTTATTTACTCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATACCAAGGTGTTTGAGATAACAATTTGTATTTATTTACTCAAGA  300

seq1  AGCCACTAGTTTTAATAGCCTAATAATCAATGTATGTAATTCTTATCGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTAGTTTTAATAGCCTAATAATCAATGTATGTAATTCTTATCGCC  350

seq1  ATCTGATAAAGATGTTATTTTTCTGATTCTGTTTTATAAATGGAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATAAAGATGTTATTTTTCTGATTCTGTTTTATAAATGGAAAAAAA  400

seq1  AGTAACAAGGCTTAGAATTTGATTGACCTACTTGATGTGCTGAAGGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAAGGCTTAGAATTTGATTGACCTACTTGATGTGCTGAAGGAATA  450

seq1  AATCTGCAGTCTTTCTTCAGATTGTTCTCAGTTGAATAATCAATAATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCAGTCTTTCTTCAGATTGTTCTCAGTTGAATAATCAATAATGGA  500

seq1  TTGGACCAGGACACTTTCAGAAGTATAATGCTGAGCTCTGGAGAATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCAGGACACTTTCAGAAGTATAATGCTGAGCTCTGGAGAATTACT  550

seq1  CTAGGATTTAGGGTTGTGCTGGGCAAACTGGAATATATAACCTTCCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTTAGGGTTGTGCTGGGCAAACTGGAATATATAACCTTCCTGAT  600

seq1  CAAACTGTTTTCTTAATAAATAAGATTTTTAAATGTGTCTTAAAGTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGTTTTCTTAATAAATAAGATTTTTAAATGTGTCTTAAAGTCTTT  650

seq1  TGAGAAAATAAACCACAGGAATGCACATAGATATATGATGACAGAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATAAACCACAGGAATGCACATAGATATATGATGACAGAATTTA  700

seq1  TTGTGGAAATTTTCTGATGGTTGGGAAACCCTGCTGCTAAGATCAAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAAATTTTCTGATGGTTGGGAAACCCTGCTGCTAAGATCAAAACC  750

seq1  TGACATTACCAGAAAGCCCTGAGCTTGGTGCAAAATGGTGAACTCCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTACCAGAAAGCCCTGAGCTTGGTGCAAAATGGTGAACTCCCTTT  800

seq1  GTCTTTAGGGATTTCTCTTCTCTACCTGGGAATCCTGGATGCTACCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAGGGATTTCTCTTCTCTACCTGGGAATCCTGGATGCTACCCTGA  850

seq1  CTACCTGAGGAACATCCGGCAAACATCTGGCAAAGCTGCACCTGAGATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGAGGAACATCCGGCAAACATCTGGCAAAGCTGCACCTGAGATCC  900

seq1  CTGGAATGCCTCCCCATGCTAATGAGGCATCGCAATAGCTTAGCCTTCGG  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGGAATGCCTCCCCATGCTAATGAGGCATCGC-ATAGCTTAGCCTTCGG  949

seq1  CCCAGCCTAGATTTTCTCACCCACGTCCACAAAACTATGTAACCCTTGGT  1000
      |||||||||||||||||||||||||| ||| ||||||||||  |||||||
seq2  CCCAGCCTAGATTTTCTCACCCACGT-CAC-AAACTATGTA--CCTTGGT  995

seq1  TCACACAGAATAAAGTATATGCACACAAGCTGTTTTGTTGAATACTGTCT  1050
      |||||||||   |||||||||||||| |||||||||||   |||||||||
seq2  TCACACAGA--TAAGTATATGCACAC-AGCTGTTTTGT--GATACTGTCT  1040

seq1  GAGAGAGCTGTTTCACTGAACATCCTCTAAAAGAGCTGCAACATTCAAGA  1100
      |||||||||  |||||   |||| |||| |||||||||| ||| |||   
seq2  GAGAGAGCTTGTTCACCTGACAT-CTCT-AAAGAGCTGC-ACA-TCA--G  1084

seq1  GATGTCACACTGAGATATCCGGGACA  1126
      |||||||||||||||||| |||||||
seq2  GATGTCACACTGAGATAT-CGGGACA  1109


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