BAC Information

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BAC

Clone NameB6Ng01-240H01
Chromosome13 (Build37)
Map Location 61,534,924 - 61,536,034
singlet/doubletsinglet
Overlap genenone
Upstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7
Downstream geneCts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240H01.bB6Ng01-240H01.g
ACCGA050610GA050611
length1,1871,103
definitionB6Ng01-240H01.b B6Ng01-240H01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatgaggttatttgatt
ttctgaagtcaaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaacgcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcac
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatacttgagaagactttttgccatcctaggttttttgttattccagacg
aacttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagtcattt
ttacaatgttgatcctgccaatccatgagcatgggagatcttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagtttttatcatac
agatcttttcacttccctttagttagagtcacgcccaagatattttaata
ttatttggtgacctatgaagaaggtgttggttccctatttctttctcagc
ctgtttattctttgtatagagaaaggccatgacttgttgagttatttata
tcccagctacttcaccgaagctgtttatcaagttaggagtttctctggta
ggactttttaggtcactatatatactattcaatcatcgcaaagtgatatt
tgacgtcctcgtgcaattcgtactcccctgtgaatct
gaattctcaattcctatacctgtaggagttgtagtttatttatttcttct
ggtacttcatgatcccagagttatgctggaaaagaatataatgaatgtta
tattgtggtagagagtgaaggtaataaagcttagcatcagtttctgaagc
cagatgttccaaagctctgtgcttttcctatggaaagagaacaagggtta
atgctcctagatggggcgtgaatgatgttcgctgctcattcattttattc
agtaatcaaaaggttaggtcctaatcctttgaggatttgccttttgttgc
atacaggaaatgctaaatgcctgtggatgtagcaaagaagcaactggatt
cttttggatattggcttcttaatatttaatcccaagccttttgtctggga
cttttatgtttaggaaaaatatattgacttaagtgttgttattttgtttc
attgatcaattcatggacatacatcaggataattacttccttaagagtgt
catggcctggactcagttaggagaggagtaaccaattcagaagcttgatg
tatgccatgaggagttacagaggtgtgtgattgcctcccctggcatactt
gaccatatgtcatccacagtggctctcatatgtgggaaactattagggaa
gcttatttgacagggatggtagccactacagtactccaagtagctaatat
ggtcatttgagagttccatgattaatcaatggatacagaaaattgaaatt
catgggacattgagtcaatctacagtggacctttcaggtagacagccaat
tgtattttagatcttttgacttattgactataacaccttcaggatttgaa
tggagtgaccttgagatagggctgggtggcttactttgagttttagcctt
tgaaggtccatggtgggccttatcttcatttcttaatgtcattattgaca
gtgtgaaaggttccttctcagattattgggaatttaaacaataaaattgt
acttttttttcaggtagggtttgtcgaattggaatctgaactaagtctga
tccattatggttaactgctacatgctggtaagctccacaaacctgacaag
gtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_61534924_61536034
seq2: B6Ng01-240H01.g_64_1166 (reverse)

seq1  AACCTTGTCAAAGTTTTTGTGAGGCCTTCACAGCCTGTTAGCAGTTAACC  50
      ||||||||| | |||| || |||  |||  |||| || |||||||||| |
seq2  AACCTTGTC-AGGTTTGTG-GAG--CTTACCAGCATG-TAGCAGTTAA-C  44

seq1  CATATGAGATCCAGACTTTATGTCAGA-TCCAATACCGACAAAACCCCTA  99
      ||||   ||| ||||| |||  ||||| ||||||  |||||||  |||||
seq2  CATAATGGAT-CAGAC-TTAGTTCAGATTCCAAT-TCGACAAA--CCCTA  89

seq1  CCCTGAAAAAAAAAAAGGTACAAATTTATTGTTT-AATTCCCAATAATCT  148
       ||||||||||||    |||||| |||||||||| |||||||||||||||
seq2  -CCTGAAAAAAAA----GTACAATTTTATTGTTTAAATTCCCAATAATCT  134

seq1  GAG-AGGAA-CTTTCACACTGTCAATAATGACA-TAAGAAATG-AGATAA  194
      ||| ||||| ||||||||||||||||||||||| ||||||||| ||||||
seq2  GAGAAGGAACCTTTCACACTGTCAATAATGACATTAAGAAATGAAGATAA  184

seq1  GG-CCACCATGGACCTTCAAAGGCTAAAACTC-AAGTAAGCCACCAAGCC  242
      || ||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  GGCCCACCATGGACCTTCAAAGGCTAAAACTCAAAGTAAGCCACCCAGCC  234

seq1  CTATCTCAAGGTCACTCCATTCAAATCCTGAAGGTGTTATAGTCAATAAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCAAGGTCACTCCATTCAAATCCTGAAGGTGTTATAGTCAATAAG  284

seq1  TCAAAAGATCTAAAATACAATTGGCTGTCTACCTGAAAGGTCCACTGTAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGATCTAAAATACAATTGGCTGTCTACCTGAAAGGTCCACTGTAG  334

seq1  ATTGACTCAATGTCCCATGAATTTCAATTTTCTGTATCCATTGATTAATC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCAATGTCCCATGAATTTCAATTTTCTGTATCCATTGATTAATC  384

seq1  ATGGAACTCTCAAATGACCATATTAGCTACTTGGAGTACTGTAGTGGCTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTCTCAAATGACCATATTAGCTACTTGGAGTACTGTAGTGGCTA  434

seq1  CCATCCCTGTCAAATAAGCTTCCCTAATAGTTTCCCACATATGAGAGCCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTGTCAAATAAGCTTCCCTAATAGTTTCCCACATATGAGAGCCA  484

seq1  CTGTGGATGACATATGGTCAAGTATGCCAGGGGAGGCAATCACACACCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATGACATATGGTCAAGTATGCCAGGGGAGGCAATCACACACCTC  534

seq1  TGTAACTCCTCATGGCATACATCAAGCTTCTGAATTGGTTACTCCTCTCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCCTCATGGCATACATCAAGCTTCTGAATTGGTTACTCCTCTCC  584

seq1  TAACTGAGTCCAGGCCATGACACTCTTAAGGAAGTAATTATCCTGATGTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGTCCAGGCCATGACACTCTTAAGGAAGTAATTATCCTGATGTA  634

seq1  TGTCCATGAATTGATCAATGAAACAAAATAACAACACTTAAGTCAATATA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGAATTGATCAATGAAACAAAATAACAACACTTAAGTCAATATA  684

seq1  TTTTTCCTAAACATAAAAGTCCCAGACAAAAGGCTTGGGATTAAATATTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTAAACATAAAAGTCCCAGACAAAAGGCTTGGGATTAAATATTA  734

seq1  AGAAGCCAATATCCAAAAGAATCCAGTTGCTTCTTTGCTACATCCACAGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCAATATCCAAAAGAATCCAGTTGCTTCTTTGCTACATCCACAGG  784

seq1  CATTTAGCATTTCCTGTATGCAACAAAAGGCAAATCCTCAAAGGATTAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCATTTCCTGTATGCAACAAAAGGCAAATCCTCAAAGGATTAGG  834

seq1  ACCTAACCTTTTGATTACTGAATAAAATGAATGAGCAGCGAACATCATTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACCTTTTGATTACTGAATAAAATGAATGAGCAGCGAACATCATTC  884

seq1  ACGCCCCATCTAGGAGCATTAACCCTTGTTCTCTTTCCATAGGAAAAGCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCCATCTAGGAGCATTAACCCTTGTTCTCTTTCCATAGGAAAAGCA  934

seq1  CAGAGCTTTGGAACATCTGGCTTCAGAAACTGATGCTAAGCTTTATTACC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTTGGAACATCTGGCTTCAGAAACTGATGCTAAGCTTTATTACC  984

seq1  TTCACTCTCTACCACAATATAACATTCATTATATTCTTTTCCAGCATAAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTCTACCACAATATAACATTCATTATATTCTTTTCCAGCATAAC  1034

seq1  TCTGGGATCATGAAGTACCAGAAGAAATAAATAAACTACAACTCCTACAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATCATGAAGTACCAGAAGAAATAAATAAACTACAACTCCTACAG  1084

seq1  GTATAGGAATTGAGAATTC  1111
      |||||||||||||||||||
seq2  GTATAGGAATTGAGAATTC  1103