BAC Information

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BAC

Clone NameB6Ng01-241J19
Chromosome13 (Build37)
Map Location 118,677,692 - 118,885,171
singlet/doubletdoublet
Overlap geneHcn1, LOC100041695, LOC674926
Upstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneMrps30, LOC668309, LOC100041278, Fgf10, LOC100041298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241J19.bB6Ng01-241J19.g
ACCGA051482GA051483
length1,0931,106
definitionB6Ng01-241J19.b B6Ng01-241J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,884,081 - 118,885,171)(118,677,692 - 118,678,794)
sequence
gaattcttccttcctgaaggctagctttgacagtactagaaggtactgtc
aaacttccaaatgatggaggtaaccaatagtcttacccaattacaatgtc
tatgactcttctaatggaattctctttggaagcaagaatgctacattttc
ataagcacacaaagtttttaatatcaattggtgatgctactttgggaaaa
ttgacatgggcatgttggaaaaaggtctatgtttcttctggttcccttta
ggtggactattataatcattttccttctgaaatcttttcaacttgttgat
gaagctgtgggccccacagctatggaatgaaaaggagtctttataaaatg
cccatacgacaaggaatatagaatgttgatatcagtagtagcaagaagaa
attaacactaatgacaataaacaaggaaaactgtgcaatcaagtcatccc
ttcaaaggatttataatgaataaagatttcttagtcatgcataatgtaaa
tatatagaggtttgtttatgggaaaaatgacatctaaaatataactgtcc
atccatttacacctttatatttatcttttataaaaattattatacaaaac
ctaaagaaacacccagcccgatataaaattgtaagaatgcaaaagtaata
tcaaaatatcagttgcattggtagatatctatactgtcaatttcttgctc
ctttttgaatctcctaaatttactgagtctagattattaaccatgtagaa
atgtactcagtggtagtagtatgtttgtgggtcactccatctccccatgg
ttcttttcttatttggtgtattattagaggtaacaggagtcttgcttttc
cattctgatttacacagccttgcttaatggaacccttgagggagagtacc
agcagagaggtggctctggagaggcagacacatgatgtcaagcagctgct
tcaccaagcacagcagacataaagtgaccccaaggagattattgatccca
tggccatgagagctgtaccagtttcacagctcccaaccccttttcctccg
caactctgcttccttccttttgaaactccagtttccggagctt
gaattcaccactctgggattcttctcctcatctgtgaaatgagaggattg
gaaacaattatctccatggtgccctcaagctctcaatgtctcttttgcac
taagtatctgttaatctcactgacatgatccaagagacacttaaaatgtc
ttctgggtcatctttatgcacataattcattaatgtgtagtactggtggg
agacatagtacaaagagcccatgtctcttagaataccctgaccatttgta
ttgtatataaatgtccttaattacttatgccaagaattatttctcaagcg
aaataccatctttctttacctcttgggtgattttatttccaccagcttta
gtttttagagctgcagctaattggctgtgccattatgtatatactttgtg
acacccaatcacacgaccacctgatatttcaaagacagagtcataactaa
attaacattcccatgagtcacaggtatgtaacatgtagttacaaggagtg
tttgcatatttttgcctcttcaaatatgcaacatttttaattggctttac
caagaatcaacaactgtgctaacggttcgattttgcaagcactctaatta
ctaaggttataaaaaataggctgcaggtgactgcaagaaactggccccaa
aagtgattggaaagttacaggaaaaataaagaagggaacaaaaagagatc
aggtcacagaggagctaaagaaatgcctgctgcggagtggagaaaccatg
acagttcatatttaaaagcatagggaatgagaaattgactaaaaacattc
agaaaggcaactcaacctggggataatccagaaatgcctactagaattgg
tctaaagaatgttgattccaataacagacatgattcgtccatgacatttg
aattatggtcaataagcttcattttcctctaccatgaagacaaaggggtc
ttgaaggacaaaaaatgcccgagtgtgatgcagacccctccactaaggac
attcaaggaacacaaagccattatttcatgttctgttatactttaaaaga
ataacatatttatcagccactttttttctattgactgtgatcttccctaa
gtatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118884081_118885171
seq2: B6Ng01-241J19.b_44_1136 (reverse)

seq1  AAGCT-CAGAAACTGAAGTATCAAAAAGAAAGGAAGCAGA--TGGCGAGA  47
      ||||| | ||||||| ||| || ||||| |||||||||||  ||  ||| 
seq2  AAGCTCCGGAAACTGGAGTTTC-AAAAGGAAGGAAGCAGAGTTGCGGAGG  49

seq1  AAAGGGGTTTGGGAGCTGTG-AACTGTGACAGCTCTCAT-GCCATGGGAT  95
      ||| ||| |||||||||||| |||||  ||||||||||| ||||||||||
seq2  AAAAGGGGTTGGGAGCTGTGAAACTGGTACAGCTCTCATGGCCATGGGAT  99

seq1  CAATAATCT-CTTGGGTTCACTTTATGTTCTGCTGTGCTTGGTGAAGCAG  144
      ||||||||| |||||| |||||||||| ||||||||||||||||||||||
seq2  CAATAATCTCCTTGGGGTCACTTTATG-TCTGCTGTGCTTGGTGAAGCAG  148

seq1  CTGCTTTGACATCATGTGTCTGCCTCTCCAGAGCCACCTCTCTGCTGGTA  194
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGC-TTGACATCATGTGTCTGCCTCTCCAGAGCCACCTCTCTGCTGGTA  197

seq1  CTCTCCCTCAAGGGTTCCATTTAAGCAAGGCTGTGTAAATCAGAATGGAA  244
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCTCCCTCAAGGGTTCCA-TTAAGCAAGGCTGTGTAAATCAGAATGGAA  246

seq1  AAGCAAGACTCCTGTTACCTCTAATAATACACCAAATAAGAAAAGAACCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGACTCCTGTTACCTCTAATAATACACCAAATAAGAAAAGAACCA  296

seq1  TGGGGAGATGGAGTGACCCACAAACATACTACTACCACTGAGTACATTTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGATGGAGTGACCCACAAACATACTACTACCACTGAGTACATTTC  346

seq1  TACATGGTTAATAATCTAGACTCAGTAAATTTAGGAGATTCAAAAAGGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTTAATAATCTAGACTCAGTAAATTTAGGAGATTCAAAAAGGAG  396

seq1  CAAGAAATTGACAGTATAGATATCTACCAATGCAACTGATATTTTGATAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATTGACAGTATAGATATCTACCAATGCAACTGATATTTTGATAT  446

seq1  TACTTTTGCATTCTTACAATTTTATATCGGGCTGGGTGTTTCTTTAGGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGCATTCTTACAATTTTATATCGGGCTGGGTGTTTCTTTAGGTT  496

seq1  TTGTATAATAATTTTTATAAAAGATAAATATAAAGGTGTAAATGGATGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAATAATTTTTATAAAAGATAAATATAAAGGTGTAAATGGATGGA  546

seq1  CAGTTATATTTTAGATGTCATTTTTCCCATAAACAAACCTCTATATATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATATTTTAGATGTCATTTTTCCCATAAACAAACCTCTATATATTT  596

seq1  ACATTATGCATGACTAAGAAATCTTTATTCATTATAAATCCTTTGAAGGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGCATGACTAAGAAATCTTTATTCATTATAAATCCTTTGAAGGG  646

seq1  ATGACTTGATTGCACAGTTTTCCTTGTTTATTGTCATTAGTGTTAATTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGATTGCACAGTTTTCCTTGTTTATTGTCATTAGTGTTAATTTC  696

seq1  TTCTTGCTACTACTGATATCAACATTCTATATTCCTTGTCGTATGGGCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTACTACTGATATCAACATTCTATATTCCTTGTCGTATGGGCAT  746

seq1  TTTATAAAGACTCCTTTTCATTCCATAGCTGTGGGGCCCACAGCTTCATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAGACTCCTTTTCATTCCATAGCTGTGGGGCCCACAGCTTCATC  796

seq1  AACAAGTTGAAAAGATTTCAGAAGGAAAATGATTATAATAGTCCACCTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTTGAAAAGATTTCAGAAGGAAAATGATTATAATAGTCCACCTAA  846

seq1  AGGGAACCAGAAGAAACATAGACCTTTTTCCAACATGCCCATGTCAATTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCAGAAGAAACATAGACCTTTTTCCAACATGCCCATGTCAATTT  896

seq1  TCCCAAAGTAGCATCACCAATTGATATTAAAAACTTTGTGTGCTTATGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGTAGCATCACCAATTGATATTAAAAACTTTGTGTGCTTATGAA  946

seq1  AATGTAGCATTCTTGCTTCCAAAGAGAATTCCATTAGAAGAGTCATAGAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGCATTCTTGCTTCCAAAGAGAATTCCATTAGAAGAGTCATAGAC  996

seq1  ATTGTAATTGGGTAAGACTATTGGTTACCTCCATCATTTGGAAGTTTGAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATTGGGTAAGACTATTGGTTACCTCCATCATTTGGAAGTTTGAC  1046

seq1  AGTACCTTCTAGTACTGTCAAAGCTAGCCTTCAGGAAGGAAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTTCTAGTACTGTCAAAGCTAGCCTTCAGGAAGGAAGAATTC  1093

seq1: chr13_118677692_118678794
seq2: B6Ng01-241J19.g_66_1171

seq1  GAATTCACCACTCTGGGATTCTTCTCCTCATCTGTGAAATGAGAGGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACTCTGGGATTCTTCTCCTCATCTGTGAAATGAGAGGATTG  50

seq1  GAAACAATTATCTCCATGGTGCCCTCAAGCTCTCAATGTCTCTTTTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATTATCTCCATGGTGCCCTCAAGCTCTCAATGTCTCTTTTGCAC  100

seq1  TAAGTATCTGTTAATCTCACTGACATGATCCAAGAGACACTTAAAATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATCTGTTAATCTCACTGACATGATCCAAGAGACACTTAAAATGTC  150

seq1  TTCTGGGTCATCTTTATGCACATAATTCATTAATGTGTAGTACTGGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTCATCTTTATGCACATAATTCATTAATGTGTAGTACTGGTGGG  200

seq1  AGACATAGTACAAAGAGCCCATGTCTCTTAGAATACCCTGACCATTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGTACAAAGAGCCCATGTCTCTTAGAATACCCTGACCATTTGTA  250

seq1  TTGTATATAAATGTCCTTAATTACTTATGCCAAGAATTATTTCTCAAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATAAATGTCCTTAATTACTTATGCCAAGAATTATTTCTCAAGCG  300

seq1  AAATACCATCTTTCTTTACCTCTTGGGTGATTTTATTTCCACCAGCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCATCTTTCTTTACCTCTTGGGTGATTTTATTTCCACCAGCTTTA  350

seq1  GTTTTTAGAGCTGCAGCTAATTGGCTGTGCCATTATGTATATACTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGAGCTGCAGCTAATTGGCTGTGCCATTATGTATATACTTTGTG  400

seq1  ACACCCAATCACACGACCACCTGATATTTCAAAGACAGAGTCATAACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAATCACACGACCACCTGATATTTCAAAGACAGAGTCATAACTAA  450

seq1  ATTAACATTCCCATGAGTCACAGGTATGTAACATGTAGTTACAAGGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATTCCCATGAGTCACAGGTATGTAACATGTAGTTACAAGGAGTG  500

seq1  TTTGCATATTTTTGCCTCTTCAAATATGCAACATTTTTAATTGGCTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATATTTTTGCCTCTTCAAATATGCAACATTTTTAATTGGCTTTAC  550

seq1  CAAGAATCAACAACTGTGCTAACGGTTCGATTTTGCAAGCACTCTAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCAACAACTGTGCTAACGGTTCGATTTTGCAAGCACTCTAATTA  600

seq1  CTAAGGTTATAAAAAATAGGCTGCAGGTGACTGCAAGAAACTGGCCCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTATAAAAAATAGGCTGCAGGTGACTGCAAGAAACTGGCCCCAA  650

seq1  AAGTGATTGGAAAGTTACAGGAAAAATAAAGAAGGGAACAAAAAGAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTGGAAAGTTACAGGAAAAATAAAGAAGGGAACAAAAAGAGATC  700

seq1  AGGTCACAGAGGAGCTAAAGAAATGCCTGCTGCGGAGTGGAGAAACCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACAGAGGAGCTAAAGAAATGCCTGCTGCGGAGTGGAGAAACCATG  750

seq1  ACAGTTCATATTTAAAAGCATAGGGAATGAGAAATTGACTAAAAACATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCATATTTAAAAGCATAGGGAATGAGAAATTGACTAAAAACATTC  800

seq1  AGAAAGGCAACTCAAACCTGGGGATAATCCAGAAATGCCTACTAGAATTG  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCAACTC-AACCTGGGGATAATCCAGAAATGCCTACTAGAATTG  849

seq1  GTCTAAAGAATGTTGATTCCAATAACAGACATGATTCGTCCATGACAATT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTCTAAAGAATGTTGATTCCAATAACAGACATGATTCGTCCATGAC-ATT  898

seq1  TGAATTATGGTCAATAAGCTTCA-TTTCCTCTACCATGAAGACAAAGGGG  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAATTATGGTCAATAAGCTTCATTTTCCTCTACCATGAAGACAAAGGGG  948

seq1  TCTTG-AGGAC-AAAAATG-CCGAGTGTGGATTGCAGACCCCTCCAACTA  996
      ||||| ||||| ||||||| |||||||||   ||||||||||||||   |
seq2  TCTTGAAGGACAAAAAATGCCCGAGTGTG--ATGCAGACCCCTCCACTAA  996

seq1  GGACATTCAGGGAACACAAAGCCATATTTTCATG-TCTGTTATACTTTAA  1045
      ||||||||| |||||||||||||||  ||||||| |||||||||||||||
seq2  GGACATTCAAGGAACACAAAGCCATTATTTCATGTTCTGTTATACTTTAA  1046

seq1  AAGAATAACATATTTATCAG-CAC-TTTTTTCTATTGTCTGTTGATCTT-  1092
      |||||||||||||||||||| ||| |||||||||||| ||| ||||||| 
seq2  AAGAATAACATATTTATCAGCCACTTTTTTTCTATTGACTG-TGATCTTC  1095

seq1  CCTTAGTATAT  1103
      ||| |||||||
seq2  CCTAAGTATAT  1106