BAC Information

Click to search

BAC

Clone NameB6Ng01-241M18
Chromosome13 (Build37)13 (Build37)
Map Location 65,913,282 - 65,914,35566,066,721 - 66,067,603
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241M18.bB6Ng01-241M18.g
ACCGA051621GA051622
length1,0611,170
definitionB6Ng01-241M18.b B6Ng01-241M18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,913,282 - 65,914,355)(66,066,721 - 66,067,603)
sequence
gaattctgcaacatatgagaaggtgaaaagtagaaattcttggaatagaa
gaagaatatcagctcaaaggtccagaaaatattttcagtgaaattatgaa
tgaaaaattttctaaactaaagaagaaaatacctattaaaatacaagaag
catccaaaatagcaaatagattggaccaaaaaagtccttttgccacataa
cagtcaaaactctaaacatgtaaagcaaagaaatatgaaaaactgcaaga
gaaaaaattaaaaagtaaataaaacaaaaacaagtaacgtatggaagcag
acctattagcttcatatctgtcttctcaatgtctactagtaaagacatca
gcgtttggaccgttttgtgctgcatagtgaaagaaactacccatgtttct
acaagaaagcaactggcgcaaatgttttggacagattcagaatcagctat
gataatgaagttattcagaggtcactgcctgagacctcacacgtgttccc
atctgggtgatgcttcccatgcagccccagagaggacccaccaccccacc
tccccctgctcaaccacctgcccctacccattgtgggcagtgatcctgtg
ctcaccatgtctaaatctcagaacttcctgaggtcccctcaatgcacccg
acagcagatctcagagcaggacacagagaaccattcaagcctgcacagcc
acagcgatcttgtagaaaggcacccggaagatcccgcctctttgtctgac
aggcatgtctgcctggagaccttgattggccagtgagtcttacccctctt
caatgttaaagtgtgcttcctgtcgaaaggctagaccttttccagatctc
tggagcccctttcagctcattagcattagtgcttgccctgggggaagaaa
ccaccattccagctcagctattctgctgccagctcctcccctctatgagc
aatatcctgacatcagaccttgcctgacattctcatagcacttgcatctt
tcctgaaatcaggtgagtagctgatagccatatctagctgcattgtagta
tcattctgacc
gaattccttgatccacgtagacttgagctttgtacaaggagacaagaatg
aatcattttcattccttctacatgataactgccagttgtacctgcaccat
ttgttgaaaatgctgtctttttttccactggatggttttagctcccttgt
cagtgatcaagtgaccataggtgtgtgagttcatctctgggtcttcaatt
ctattccatttgatctacttgtctgtcactataccagtaccatgcagttt
ttatcacaattgctctgtagtacagcttgaggtcaggcatggtgattcca
tcagaggttcttttatcattgagaatagcttttgctatcctaggtttttt
gctatttcagatgaatttgcagatttccctttctaattcgatgaagaatt
gaattggaagtttgatggagattgcattgaatctgtagattgattttggt
aagatagccatttttactatatggatcctgccaatccatgagcatgggag
atctttccatcttctgagatcttcctttatttctttcttcagagacttga
agttcttaccatacagatctttcactttcttagttagagtcacaccaagg
catttcatattatttgtgcctattgtgaagggtgctgtttccctaatttc
tttctcatcctctttatcctttgtgtagagaaaggccttggcttcactca
atatactgtgaccaaggtacataagtaaataaacacttttctcacatgtt
tctttggctatggtggtttttacagcaacagaatctaagacatcacctaa
atggtaaattgcctctgttgggatttggaatctcatagcttcctgatgca
ataaaaggcactgatttgaaagagaaacaagaatgaatgttagcagagtg
tgaagcaccatgacagtaatgcatatgatagcacagaagtgctgaacttt
gggatagcttttcatgtactaggagatgctaagaatatcagataacatac
aagacggacatctatgaaaaggaacattgaagatcagattgttgctgcaa
tattaagctttgtatggatgtgaaaaacagtttccttatggaatgactgt
gttttcattaagtgaaaaatcatatggaaatgtgctccacaagacctcac
ccagagtgagaggctcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65913282_65914355
seq2: B6Ng01-241M18.b_48_1108

seq1  GAATTCTGCAACATATGAGAAGGTGAAAAGTAGAAATTCTTGGAATAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAACATATGAGAAGGTGAAAAGTAGAAATTCTTGGAATAGAA  50

seq1  GAAGAATATCAGCTCAAAGGTCTAGAAAATATTTTCAGTGAAATTATGAA  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAGAATATCAGCTCAAAGGTCCAGAAAATATTTTCAGTGAAATTATGAA  100

seq1  TGAAAAATTTTCTAAACTAAAGAAGAAAATACCTATTAAAATACAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTTTCTAAACTAAAGAAGAAAATACCTATTAAAATACAAGAAG  150

seq1  CATCCAAAATAGCAAATAGATTGGACCAAAAAAGTCCTTTTGCCACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAAATAGCAAATAGATTGGACCAAAAAAGTCCTTTTGCCACATAA  200

seq1  CAGTCAAAACTCTAAACATGTAAAGCAAAGAAATATGAAAAACTGCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAAACTCTAAACATGTAAAGCAAAGAAATATGAAAAACTGCAAGA  250

seq1  GAAAAAATTAAAAAGTAAATAAAACAAAAACAAGTAACGTATGGAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATTAAAAAGTAAATAAAACAAAAACAAGTAACGTATGGAAGCAG  300

seq1  ACCTATTAGCTTCATATCTGTCTTCTCAATGTCTACTAGTAAAGACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTAGCTTCATATCTGTCTTCTCAATGTCTACTAGTAAAGACATCA  350

seq1  GCGTTTGGACCGTTTTGTGCTGCATAGTGAAAGAAACTACCCATGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTGGACCGTTTTGTGCTGCATAGTGAAAGAAACTACCCATGTTTCT  400

seq1  ACAAGAAAGCAACTGGCGCAAATGTTTTGGACAGATTCAGAATCAGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAGCAACTGGCGCAAATGTTTTGGACAGATTCAGAATCAGCTAT  450

seq1  GATAATGAAGTTATTCAGAGGTCACTGCCTGAGACCTCACACGTGTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGAAGTTATTCAGAGGTCACTGCCTGAGACCTCACACGTGTTCCC  500

seq1  ATCTGGGTGATGCTTCCCATGCAGCCCCAGAGAGGACCCACCACCCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTGATGCTTCCCATGCAGCCCCAGAGAGGACCCACCACCCCACC  550

seq1  TCCCCCTGCTCAACCACCTGCCCCTACCCATTGTGGGCAGTGATCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGCTCAACCACCTGCCCCTACCCATTGTGGGCAGTGATCCTGTG  600

seq1  CTCACCATGTCTAAATCTCAGAACTTCCTGAGGTCCCCTCAATGCACCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATGTCTAAATCTCAGAACTTCCTGAGGTCCCCTCAATGCACCCG  650

seq1  ACAGCAGATCTCAGAGCAGGACACAGAGAACCATTCAAGCCTGCACAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGATCTCAGAGCAGGACACAGAGAACCATTCAAGCCTGCACAGCC  700

seq1  ACAGCGATCTTGTAGAAAGGCACCCGGAAGATCCCGCCTCTTTGTCTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGATCTTGTAGAAAGGCACCCGGAAGATCCCGCCTCTTTGTCTGAC  750

seq1  AGGCATGTCTGCCTGGAGACCTTGATTGGCCAGTGAGTCTTACCCCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTCTGCCTGGAGACCTTGATTGGCCAGTGAGTCTTACCCCTCTT  800

seq1  CAATGTTAAAGTGTGCTTCCTGTC-AAAGGCTAGACCTTTTCCAGATCTC  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAATGTTAAAGTGTGCTTCCTGTCGAAAGGCTAGACCTTTTCCAGATCTC  850

seq1  TGGAGCCCCTTTCAGCTCATTAGCATTAGTGCTTGCCCTGGGGGAAGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCCCTTTCAGCTCATTAGCATTAGTGCTTGCCCTGGGGGAAGAAA  900

seq1  CCACCATTCCAGCTCAGGCTATTCTGCTGCCAGCTCCTCCCCTCTATGAG  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCACCATTCCAGCTCA-GCTATTCTGCTGCCAGCTCCTCCCCTCTATGAG  949

seq1  CAATAATCCTGACATCAGACCTTGCCTGAACATTCTTCATAGCACTTGCA  999
      |||| ||||||||||||||||||||||| |||||| ||||||||||||||
seq2  CAAT-ATCCTGACATCAGACCTTGCCTG-ACATTC-TCATAGCACTTGCA  996

seq1  TTCTTTTCCCTGAAATCAAGGTGAGTAGCTTGAATAGCCCATTAATCTAG  1049
       |||||  ||||||||| ||||||||||||   |||| ||||  ||||||
seq2  -TCTTT--CCTGAAATC-AGGTGAGTAGCT--GATAG-CCAT--ATCTAG  1037

seq1  CTGCATTGTAGGTATCAATCTGACC  1074
      |||||||||| |||||| |||||||
seq2  CTGCATTGTA-GTATCATTCTGACC  1061

seq1: chr13_66066721_66067603
seq2: B6Ng01-241M18.g_361_1234

seq1  TCCATCAGAGGTTCTTTTATCATTGAGAATAGCTTTTGCTATCCTAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGAGGTTCTTTTATCATTGAGAATAGCTTTTGCTATCCTAGGTT  50

seq1  TTTTGCTATTTCAGATGAATTTGCAGATTTCCCTTTCTAATTCGATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTATTTCAGATGAATTTGCAGATTTCCCTTTCTAATTCGATGAAG  100

seq1  AATTGAATTGGAAGTTTGATGGAGATTGCATTGAATCTGTAGATTGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTGGAAGTTTGATGGAGATTGCATTGAATCTGTAGATTGATTT  150

seq1  TGGTAAGATAGCCATTTTTACTATATGGATCCTGCCAATCCATGAGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGATAGCCATTTTTACTATATGGATCCTGCCAATCCATGAGCATG  200

seq1  GGAGATCTTTCCATCTTCTGAGATCTTCCTTTATTTCTTTCTTCAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCTTTCCATCTTCTGAGATCTTCCTTTATTTCTTTCTTCAGAGAC  250

seq1  TTGAAGTTCTTACCATACAGATCTTTCACTTTCTTAGTTAGAGTCACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTCTTACCATACAGATCTTTCACTTTCTTAGTTAGAGTCACACC  300

seq1  AAGGCATTTCATATTATTTGTGCCTATTGTGAAGGGTGCTGTTTCCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTTCATATTATTTGTGCCTATTGTGAAGGGTGCTGTTTCCCTAA  350

seq1  TTTCTTTTTCATCCTCTTTATCCTTTGTGTAGAGAAAGGCCTTGGCTTCA  400
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTCATCCTCTTTATCCTTTGTGTAGAGAAAGGCCTTGGCTTCA  400

seq1  CTCAATATACTGTGACCAAGGTACATAAGTAAATAAACACTTTTCTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATATACTGTGACCAAGGTACATAAGTAAATAAACACTTTTCTCACA  450

seq1  TGTTTCTTTGGCTATGGTGGTTTTTACAGCAACAGAATCTAAGAACTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TGTTTCTTTGGCTATGGTGGTTTTTACAGCAACAGAATCTAAGACATCAC  500

seq1  CTAAATGGTAAATTGCCTCTGTTGGGATTTGGAATCTCATAGCTTCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGGTAAATTGCCTCTGTTGGGATTTGGAATCTCATAGCTTCCTGA  550

seq1  TGCAATAAAAGGCACTGATTTGAAAAGAGAAACAAGAATGAATGTTAGCA  600
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCAATAAAAGGCACTGATTTG-AAAGAGAAACAAGAATGAATGTTAGCA  599

seq1  GAGTGTGAAGCACCATGACAGTAATGCATATGATAGCACAGAAGTGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGAAGCACCATGACAGTAATGCATATGATAGCACAGAAGTGCTGA  649

seq1  ACTTTGGGATAGCTTTCCAATGTACTAGGGAGATGCTAAGAATATCAGAT  700
      |||||||||||||||| | |||||||| ||||||||||||||||||||||
seq2  ACTTTGGGATAGCTTTTC-ATGTACTA-GGAGATGCTAAGAATATCAGAT  697

seq1  AACATACAAAGACGGGAACATTCTATGAAAAGG-ACATTGAGATTCAGAT  749
      ||||||| |||||||  ||| |||||||||||| |||||||   ||||||
seq2  AACATAC-AAGACGG--ACA-TCTATGAAAAGGAACATTGAAGATCAGAT  743

seq1  TGTGCCTGTAATATAAGGCTTTGTAATTGTATGTGAAAAAACAGTTTCCT  799
      |||  ||| ||||| | ||||||||  || ||||| ||||||||||||||
seq2  TGTTGCTGCAATATTAAGCTTTGTA--TGGATGTG-AAAAACAGTTTCCT  790

seq1  TATGAAATGACTGTG-TTTCATTAAGTGAGAAAAATCACTAATGGAAATG  848
      |||| |||||||||| |||||||||||  |||||||||   |||||||||
seq2  TATGGAATGACTGTGTTTTCATTAAGT--GAAAAATCA--TATGGAAATG  836

seq1  TCTCCCACAAGACCTTCACCACAGTGA---GGTCAGTG  883
      |   |||||||||||   ||| |||||   | ||||||
seq2  TGCTCCACAAGACCTCACCCAGAGTGAGAGGCTCAGTG  874