BAC Information

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BAC

Clone NameB6Ng01-241P09
Chromosome13 (Build37)
Map Location 24,572,509 - 24,715,853
singlet/doubletdoublet
Overlap gene5830431A10Rik, 6330500D04Rik
Upstream geneBtn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
Downstream geneLOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241P09.bB6Ng01-241P09.g
ACCGA051740GA051741
length996278
definitionB6Ng01-241P09.b B6Ng01-241P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,572,509 - 24,573,503)(24,715,576 - 24,715,853)
sequence
gaattcctgaggctgggtaactgaactgtggcttttgctgacatcggctc
agtcttccaaggcatggacaggcctgtgcgtatgaccgccctggagtctg
tatttacataatttgcatatgctcctatgcctttgctgattttccatgga
gttccacaacactgattctgcaaagactcctccctctgctatttgcaata
tagactaagttctgatcacattcttgctacgataaaatatcctgacaaag
gcgacttcagagcaggaggcttgtttgtctacagtcacaagctacagttc
tccgtgttggaacagtgaagccaggaactggcagcagcctgtcacgtcca
cagtgagagtagagcgggaacaaatggatgcctgcttttgctcagcaccc
tcttgacatttatctgctccccgccccaaaccctgggaacagtgacaccc
acaataggcagatctccccacctcaattaatgggatcagaatgattgccc
cacagatatgcccacaggccaacctcactcttctgcacagtccctctctg
agactctgtttccaggtagatctaggatgtgccaagttgacaagcagacc
tgaccatcacagactatttctctcttaaaataccttcagaggttgggata
tagttcaacagtactacatcagtctatataagccccaggccatcccccaa
aaacaccaccactgtgaatacactctctcgagtgcacacacacgtacaca
cgtgcacacatgcacacacgaatgtacccatgatttcctaaatgccttaa
gggtaatcatattttatgaaaaaaaaaaaacctaacaaatactttaaaat
atacagtacttataccaatcacaagacattaaattacaaaaaatataaga
ctctgtttgacatgttattttgtttttaattaataatgtgtttctttttt
agatagtatatttattgtttgtttgtttggtttgtttatgtgtttg
tttgggataatgttttgcttatttgagttcaagatgggtgactcttgtca
tcacatcagctatagatgttaatctgtgaaagccattctcatcttacaga
agcagaagcaggcaataggctacctctggcctgaaggctatggcttatca
acccctggctagaccaagagcactgcagaaatccactgaatcactgtgag
tagttctgatgactcattgtttttttgtttttatttttttgagtgcgtgt
ataaatgcacgtacaagtacttgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24572509_24573503
seq2: B6Ng01-241P09.b_47_1042

seq1  GAATTCCTGAGGCTGGGTAACTGAACTGTGGCTTTTGCTGACATCGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGGCTGGGTAACTGAACTGTGGCTTTTGCTGACATCGGCTC  50

seq1  AGTCTTCCAAGGCATGGACAGGCCTGTGCGTATGACCGCCCTGGAGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCAAGGCATGGACAGGCCTGTGCGTATGACCGCCCTGGAGTCTG  100

seq1  TATTTACATAATTTGCATATGCTCCTATGCCTTTGCTGATTTTCCATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATAATTTGCATATGCTCCTATGCCTTTGCTGATTTTCCATGGA  150

seq1  GTTCCACAACACTGATTCTGCAAAGACTCCTCCCTCTGCTATTTGCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACAACACTGATTCTGCAAAGACTCCTCCCTCTGCTATTTGCAATA  200

seq1  TAGACTAAGTTCTGATCACATTCTTGCTACGATAAAATATCCTGACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAAGTTCTGATCACATTCTTGCTACGATAAAATATCCTGACAAAG  250

seq1  GCGACTTCAGAGCAGGAGGCTTGTTTGTCTACAGTCACAAGCTACAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTTCAGAGCAGGAGGCTTGTTTGTCTACAGTCACAAGCTACAGTTC  300

seq1  TCCGTGTTGGAACAGTGAAGCCAGGAACTGGCAGCAGCCTGTCACGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGTTGGAACAGTGAAGCCAGGAACTGGCAGCAGCCTGTCACGTCCA  350

seq1  CAGTGAGAGTAGAGCGGGAACAAATGGATGCCTGCTTTTGCTCAGCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGTAGAGCGGGAACAAATGGATGCCTGCTTTTGCTCAGCACCC  400

seq1  TCTTGACATTTATCTGCTCCCCGCCCCAAACCCTGGGAACAGTGACACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACATTTATCTGCTCCCCGCCCCAAACCCTGGGAACAGTGACACCC  450

seq1  ACAATAGGCAGATCTCCCCACCTCAATTAATGGGATCAGAATGATTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGGCAGATCTCCCCACCTCAATTAATGGGATCAGAATGATTGCCC  500

seq1  CACAGATATGCCCACAGGCCAACCTCACTCTTCTGCACAGTCCCTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATATGCCCACAGGCCAACCTCACTCTTCTGCACAGTCCCTCTCTG  550

seq1  AGACTCTGTTTCCAGGTAGATCTAGGATGTGCCAAGTTGACAAGCAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGTTTCCAGGTAGATCTAGGATGTGCCAAGTTGACAAGCAGACC  600

seq1  TGACCATCACAGACTATTTCTCTCTTAAAATACCTTCAGAGGTTGGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATCACAGACTATTTCTCTCTTAAAATACCTTCAGAGGTTGGGATA  650

seq1  TAGTTCAACAGTACTACATCAGTCTATATAAGCCCCAGGCCATCCCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAACAGTACTACATCAGTCTATATAAGCCCCAGGCCATCCCCCAA  700

seq1  AAACACCACCACTGTGAATACACTCTCTCGAGTGCACACACACGTACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCACCACTGTGAATACACTCTCTCGAGTGCACACACACGTACACA  750

seq1  CGTGCACACATGCACACACGAATGTACCCATGATTTCCTAAATGCCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACACATGCACACACGAATGTACCCATGATTTCCTAAATGCCTTAA  800

seq1  GGGTAATCATATTTTATG-AAAAAAAAAAACCTAACAAATACTTTAAAAT  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGTAATCATATTTTATGAAAAAAAAAAAACCTAACAAATACTTTAAAAT  850

seq1  ATACAGTACTTATACCAATCACAAGACATTAAATTACAAAAAATATAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTACTTATACCAATCACAAGACATTAAATTACAAAAAATATAAGA  900

seq1  CTCTGTTTGACATGTTATTTTGTTTTTAATTAATAAATGTGTTTC-TTTT  948
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  CTCTGTTTGACATGTTATTTTGTTTTTAATTAAT-AATGTGTTTCTTTTT  949

seq1  TAGATAGTATATTTATTTGTTTGTTTGTTT-GTTTGTTTATGTGTTTG  995
      ||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  TAGATAGTATATTTA-TTGTTTGTTTGTTTGGTTTGTTTATGTGTTTG  996

seq1: chr13_24715576_24715853
seq2: B6Ng01-241P09.g_72_349 (reverse)

seq1  ACACACAAGTACTTGTACGTGCATTTATACACGCACTCAAAAAAATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAGTACTTGTACGTGCATTTATACACGCACTCAAAAAAATAAAA  50

seq1  ACAAAAAAACAATGAGTCATCAGAACTACTCACAGTGATTCAGTGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACAATGAGTCATCAGAACTACTCACAGTGATTCAGTGGATTT  100

seq1  CTGCAGTGCTCTTGGTCTAGCCAGGGGTTGATAAGCCATAGCCTTCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGCTCTTGGTCTAGCCAGGGGTTGATAAGCCATAGCCTTCAGGC  150

seq1  CAGAGGTAGCCTATTGCCTGCTTCTGCTTCTGTAAGATGAGAATGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTAGCCTATTGCCTGCTTCTGCTTCTGTAAGATGAGAATGGCTTT  200

seq1  CACAGATTAACATCTATAGCTGATGTGATGACAAGAGTCACCCATCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTAACATCTATAGCTGATGTGATGACAAGAGTCACCCATCTTGA  250

seq1  ACTCAAATAAGCAAAACATTATCCCAAA  278
      ||||||||||||||||||||||||||||
seq2  ACTCAAATAAGCAAAACATTATCCCAAA  278