BAC Information

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BAC

Clone NameB6Ng01-242M19
Chromosome13 (Build37)
Map Location 24,343,246 - 24,344,406
singlet/doubletsinglet
Overlap geneLrrc16
Upstream geneZfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242M19.bB6Ng01-242M19.g
ACCGA052347GA052348
length1,1911,155
definitionB6Ng01-242M19.b B6Ng01-242M19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcccttcccaatctgttggtggact
ttttgtcttattgacggtgtcttttgccttacagaagctttgtaatttta
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggttttttcccca
ctttctcctctgtaagtttcactgtctctggttttatgtggagttccttg
atccacttagatttgaccttagtacaaggagataggaatggatcaatttg
caatcttctacatgataaccgccagttgtgtcagcaccatttgttgaaaa
tgctgtcttttttccactggatggtttttgatcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctgtcgctataccagtaccacacagtttttaccacaattg
ctctgtagtacagctttaggtcagggatggtgattccaccagaggtcctt
ttatctttaaggagagtttttgctatcctaggttttttgttattccagat
gaatttgcagattgccctttctaatttgttaaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttactatattgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttttttcttcagagacttgaagttcttatcat
acagatctttcacttccttaattagagtcatgccaaggtattttatatta
tttgtgactattgaaaggtgttgtttccctaatttctctctcagctgtta
tcttgtgtaagagaaaggtcaatgacttgtttgagttaatttttatatcc
agctacttttactgaagctgttatcaggttaggaagttctctgggcaatt
taaggtcatttaatattatctatccattcatcggcaatggaatgacttct
cgtcaatgtattctgaattcactttgtgtgatcgaatgtct
gaattcaaggccactctcagctggtacatagccagttcaaggccaggctc
agctatatgggatcctgtctccaaaacccaatagtaggaacagaggctga
ggagacagcgcagttaataaagagctcttgccaatcacgcctgaggatct
gagttcaatccccagcagccacagcaaaaggtgaggagggtgttgtgctg
ggcatttgtgatccaaggcgtgggaagacggagaaaagagactctttagg
gcatgctagccagcctagcctagctgaaaagtgctttcagaaggtgagct
gaatttgtgagccctgggttccagcaagaaacttcttgttcagagagcca
cacattaaagagacatgaaagtaggaggaagatcgatgaataagacaagt
ccaggagggaaacagaggggagatgggaacaaacacaactctgtcagata
caggtatgaaactaacaaagaatagaaaaatgggaaaaaataagctggat
aattacttagatatgatcctcaaacctgatctcgtattatctccatagtg
tgtacacaagcatccacattcaggagatggacacacacacaaacacacat
acaacagtaatgttgactctggtactggctaagattcctgagccctgtgg
aagcttccacctgagaagcccctaggaaaagtcctgccgaaggaaatgga
ctttgctttcattttcctgacatcaataccatagccttcagtcccatacc
ttgaagattctcaatgcttttttgcacgcatgcctatgtgtagcatgagt
gtgtgggagcatatgtgtgtataaagatgcaatcatgtgtacgtgtatgc
atatggagactaaacgttgatattggtcttcctaatcatccatctccact
gttattaacacaggctctcccacttgaatccggaacgcaccagtttcagc
tattcggctgggccagcttactgggacgatgcccagtcttgactaccaga
ctgggattacgggtaggcatcaccccacatgtattttgtgtgggtgctgg
ggatccagacctatgcctcaaggtcctcacaggcagtgccttaacctctc
caccctttactaggcctggattttttctaagaaccaaaactaatgtgtgt
tttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24343246_24344406
seq2: B6Ng01-242M19.g_67_1221

seq1  GAATTCAAGGCCACTCTCAGCTGGTACATAGCCAGTTCAAGGCCAGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCACTCTCAGCTGGTACATAGCCAGTTCAAGGCCAGGCTC  50

seq1  AGCTATATGGGATCCTGTCTCCAAAACCCAATAGTAGGAACAGAGGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATGGGATCCTGTCTCCAAAACCCAATAGTAGGAACAGAGGCTGA  100

seq1  GGAGACAGCGCAGTTAATAAAGAGCTCTTGCCAATCACGCCTGAGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGCGCAGTTAATAAAGAGCTCTTGCCAATCACGCCTGAGGATCT  150

seq1  GAGTTCAATCCCCAGCAGCCACAGCAAAAGGTGAGGAGGGTGTTGTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAATCCCCAGCAGCCACAGCAAAAGGTGAGGAGGGTGTTGTGCTG  200

seq1  GGCATTTGTGATCCAAGGCGTGGGAAGACGGAGAAAAGAGACTCTTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGTGATCCAAGGCGTGGGAAGACGGAGAAAAGAGACTCTTTAGG  250

seq1  GCATGCTAGCCAGCCTAGCCTAGCTGAAAAGTGCTTTCAGAAGGTGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTAGCCAGCCTAGCCTAGCTGAAAAGTGCTTTCAGAAGGTGAGCT  300

seq1  GAATTTGTGAGCCCTGGGTTCCAGCAAGAAACTTCTTGTTCAGAGAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTGAGCCCTGGGTTCCAGCAAGAAACTTCTTGTTCAGAGAGCCA  350

seq1  CACATTAAAGAGACATGAAAGTAGGAGGAAGATCGATGAATAAGACAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAAGAGACATGAAAGTAGGAGGAAGATCGATGAATAAGACAAGT  400

seq1  CCAGGAGGGAAACAGAGGGGAGATGGGAACAAACACAACTCTGTCAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGGAAACAGAGGGGAGATGGGAACAAACACAACTCTGTCAGATA  450

seq1  CAGGTATGAAACTAACAAAGAATAGAAAAATGGGAAAAAATAAGCTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGAAACTAACAAAGAATAGAAAAATGGGAAAAAATAAGCTGGAT  500

seq1  AATTACTTAGATATGATCCTCAAACCTGATCTCGTATTATCTCCATAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTAGATATGATCCTCAAACCTGATCTCGTATTATCTCCATAGTG  550

seq1  TGTACACAAGCATCCACATTCAGGAGATGGACACACACACAAACACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAAGCATCCACATTCAGGAGATGGACACACACACAAACACACAT  600

seq1  ACAACAGTAATGTTGACTCTGGTACTGGCTAAGATTCCTGAGCCCTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTAATGTTGACTCTGGTACTGGCTAAGATTCCTGAGCCCTGTGG  650

seq1  AAGCTTCCACCTGAGAAGCCCCTAGGAAAAGTCCTGCCGAAGGAAATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCACCTGAGAAGCCCCTAGGAAAAGTCCTGCCGAAGGAAATGGA  700

seq1  CTTTGCTTTCATTTTCCTGACATCAATACCATAGCCTTCAGTCCCATACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTTCATTTTCCTGACATCAATACCATAGCCTTCAGTCCCATACC  750

seq1  TTGAAGATTCTCAATGCTTTTTTGCACGCATGCCTATGTGTAGCATGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATTCTCAATGCTTTTTTGCACGCATGCCTATGTGTAGCATGAGT  800

seq1  GTGTGGGAGCATATGTGTGTATAAAGATGCAATCATGTGTACGTGTATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGAGCATATGTGTGTATAAAGATGCAATCATGTGTACGTGTATGC  850

seq1  ATATGGAGACTAAACGTTGATATTGGTCTTCCTAATCATCCATCTCCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGACTAAACGTTGATATTGGTCTTCCTAATCATCCATCTCCACT  900

seq1  GTTATTAACACAGGCTCTCCCACTTGAATCCGGAACGCACCAG-TTCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTATTAACACAGGCTCTCCCACTTGAATCCGGAACGCACCAGTTTCAGC  950

seq1  TATTCGGGCTGGCCAGCTTACTGGGACGATGCCCAGTCTTGACCTACCAA  999
      |||||||   |||||||||||||||||||||||||||||||| ||||| |
seq2  TATTCGGCTGGGCCAGCTTACTGGGACGATGCCCAGTCTTGA-CTACC-A  998

seq1  GACTGGGATTACGGGTAGGCCATCACCCCACATGGTATTTGTGTGGGTGC  1049
      ||||||||||||||||||| ||||||||||||||   |||||||||||||
seq2  GACTGGGATTACGGGTAGG-CATCACCCCACATGTATTTTGTGTGGGTGC  1047

seq1  TGGGGAT-CAGAACTATGGCCCTCAA-GTCCTCACAGCAGGTGCTTTACT  1097
      ||||||| |||| |||||  |||||| ||||||||||   |||| |||  
seq2  TGGGGATCCAGACCTATG--CCTCAAGGTCCTCACAGGCAGTGCCTTAAC  1095

seq1  CTC-CCACCCTCTACCTAGCCCTGGATTTTTTTTTTCTTTAGGAAACAAA  1146
      ||| ||||||| || |||| |||||||||||      | || ||| ||||
seq2  CTCTCCACCCTTTA-CTAGGCCTGGATTTTT------TCTAAGAACCAAA  1138

seq1  ACTAA--TGTGTTTTCC  1161
      |||||  ||||||||||
seq2  ACTAATGTGTGTTTTCC  1155