BAC Information

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BAC

Clone NameB6Ng01-243C09
Chromosome13 (Build37)
Map Location 48,421,423 - 48,422,336
singlet/doubletsinglet
Overlap genenone
Upstream gene4931429P17Rik, Id4, LOC667351
Downstream geneZfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243C09.bB6Ng01-243C09.g
ACCGA052613GA052614
length9141,189
definitionB6Ng01-243C09.b B6Ng01-243C09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgtgcatctgtactctagacttgagtagagataaaatagagg
gtcaccctggccaagttcttactcctccttagcctcagtttccttgtttg
ccacagggggataatactaatttcaatggcttatttgctgttggataaga
ttacgattataataacatcaggaacccctctcttggtataatatgcactt
gatgtggaatagcctctctctcctgcattcttctacagtccccttttctg
ttttgttacttctgccctcagtatgaaagatctgtggacaggtcaaggcc
aaggtctaacggaccatgaaaggacagcttttacatctgagctgccaatg
aggacatctagctatgagatattttctctctctctctctctctctctctc
tctctctctctctctctctctctcaaattagcaaatattccaaggctttg
agaacaagaaagcatattttcctcttcacttagtgccatacgcaataata
ctccaacaacaaacaatcaataaaatgaaaagatggagccaattgaactt
gcctgaaaaaagccaacattcaaccaataatcgactactgacgtaagcta
gttgatggaatagacattgatcagccacaaagtccacagcttgaccttca
aagaggtgagggtcacatcaggaagcccaacaatacgcatgttcaatttg
gagcagttaacattcagtgttgcaagggacaatagtgagaaaggtgttag
aaaaccaattggggtatgtgggaaacacaggatgtctagaccctctggcc
attgctactctctggcatattttcctccacagagggaagaaccatgtgct
tttcagcctttgcaaaaagggggtttggtgtctaaaggtgccaaacccct
ggacttcaaactcc
gaattcaatattcttgaatatttcattggattgttattggcttacctcgg
gctatatactcttagagaaacccttctcctcctctcccagcagctagtaa
ttgccgtagcttggtactaggtatttggtgccgaactcttgtctctgtgc
tgagatttgttctggtttgggcttgcacgggtcttgtgcatggtgttgta
actgcagtgagcttgtatgtacagttgccctattgtctgtactggctggt
tttgtgtgtcaacttgacacaggctggagttatcacagagaaagacgctt
cagttgggaagtgccttcatgagatccagctgtggggcatttttttggtt
gatgatcaaggggggagggcctattgtgggtggtgccatctctgggctgg
tagtcttgggttctagaagagagcaagttgagcaagccaggggaagcaag
ccagtaagaaacatccctccatggcctctgcatcagctcctgcttcctga
tctgcttgagttccagtcctgacttcctttggtgatgaacagcaatgtgg
aaagtgtaagctgaataaaccctttcctctccaacttgcttattggtcat
atttgtgcaggaatacaaaccctgactaagacacattggtaccaggaatg
gggtattcttgtgacaacctgatgatgttttggggaggactgtggaagga
ctttggaactttgggctagaagatccattcggtattaagagctctgtggg
atgttgtataggagcttggaagataatgttgagaacagtgcacaagatgg
aggcctggcttgtgaaatttcagagggaagactaaagactcttatcagtg
ccgctgctatttttattgtgaagattctgtggttttgggttagctggggc
tgaagaatctgctgtaaataacaagataccagaactactaaagtgaaaac
ttttgcattactgggactattgatgctggtgagcttggagctaagaaatt
gagatgggctcaggggtaagagcacttgactgctcttctgaagttccaat
cccagccatccactatgtggccttacaaccatccgccatgtgagatctga
atcacggttcttctgcgtgttctggatgacagctacaggtacctattatg
agtagtatatgagatccttggcgccagaatcatgcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48421423_48422336
seq2: B6Ng01-243C09.b_46_959

seq1  GAATTCACTGTGCATCTGTACTCTAGACTTGAGTAGAGATAAAATAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGCATCTGTACTCTAGACTTGAGTAGAGATAAAATAGAGG  50

seq1  GTCACCCTGGCCAAGTTCTTACTCCTCCTTAGCCTCAGTTTCCTTGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCTGGCCAAGTTCTTACTCCTCCTTAGCCTCAGTTTCCTTGTTTG  100

seq1  CCACAGGGGGATAATACTAATTTCAATGGCTTATTTGCTGTTGGATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGGGATAATACTAATTTCAATGGCTTATTTGCTGTTGGATAAGA  150

seq1  TTACGATTATAATAACATCAGGAACCCCTCTCTTGGTATAATATGCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGATTATAATAACATCAGGAACCCCTCTCTTGGTATAATATGCACTT  200

seq1  GATGTGGAATAGCCTCTCTCTCCTGCATTCTTCTACAGTCCCCTTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAATAGCCTCTCTCTCCTGCATTCTTCTACAGTCCCCTTTTCTG  250

seq1  TTTTGTTACTTCTGCCCTCAGTATGAAAGATCTGTGGACAGGTCAAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTACTTCTGCCCTCAGTATGAAAGATCTGTGGACAGGTCAAGGCC  300

seq1  AAGGTCTAACGGACCATGAAAGGACAGCTTTTACATCTGAGCTGCCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTAACGGACCATGAAAGGACAGCTTTTACATCTGAGCTGCCAATG  350

seq1  AGGACATCTAGCTATGAGATATTTTCTCTCTCTCTCTCTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCTAGCTATGAGATATTTTCTCTCTCTCTCTCTCTCTCTCTCTC  400

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAAATTAGCAAATATTCCAAG  450
      |||||||||||||||||||||||      |||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCT------CAAATTAGCAAATATTCCAAG  444

seq1  GCTTTGAGAACAAGAAAGCATATTTTCCTCTTCACTTAGTGCCATAGGCA  500
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTTTGAGAACAAGAAAGCATATTTTCCTCTTCACTTAGTGCCATACGCA  494

seq1  ATAATAATCCAACAACAAACAATCAATAAAATGAAAAGATGGAGCCAATT  550
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTCCAACAACAAACAATCAATAAAATGAAAAGATGGAGCCAATT  544

seq1  GAACTTGCCTGAAAAAAGCCAACATTCAACCAATAATCGACTACTGACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCCTGAAAAAAGCCAACATTCAACCAATAATCGACTACTGACGT  594

seq1  AAGCTAGTTGATGGAATAGACATTGATCAGCCACAAAGTCCACAGCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGTTGATGGAATAGACATTGATCAGCCACAAAGTCCACAGCTTGA  644

seq1  CCTTCAAAGAGGTGAGGGTCACATCAGGAAGCCCAACAATACGCAGGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTTCAAAGAGGTGAGGGTCACATCAGGAAGCCCAACAATACGCATGTTC  694

seq1  AATTTGGAGCAGTTAACATTCAGTGTTGCAA-GGACAATAGTGAGAAAGG  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATTTGGAGCAGTTAACATTCAGTGTTGCAAGGGACAATAGTGAGAAAGG  744

seq1  TGTTAGAGAACAGATTGGGGTATGTGGGAAGCACAGGATGTCTAGACCTT  799
      ||||||| |||  ||||||||||||||||| ||||||||||||||||| |
seq2  TGTTAGAAAACCAATTGGGGTATGTGGGAAACACAGGATGTCTAGACCCT  794

seq1  CTGGCCATTGCTACTCTCTGGCATATTTACCT-CACAGAGGGAAGAACCA  848
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  CTGGCCATTGCTACTCTCTGGCATATTTTCCTCCACAGAGGGAAGAACCA  844

seq1  AGTGCTTTTCAGCCTTGCCAAAA--GGGGTCTGGTGTCTAAAGGTGC--A  894
       |||||||||||||||  |||||  ||||| ||||||||||||||||  |
seq2  TGTGCTTTTCAGCCTTTGCAAAAAGGGGGTTTGGTGTCTAAAGGTGCCAA  894

seq1  AACCCTTGACTTCAAACTCC  914
      | |||| |||||||||||||
seq2  ACCCCTGGACTTCAAACTCC  914