BAC Information

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BAC

Clone NameB6Ng01-244D04
Chromosome13 (Build37)
Map Location 23,080,443 - 23,080,976
singlet/doubletsinglet
Overlap genenone
Upstream geneGm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
Downstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244D04.bB6Ng01-244D04.g
ACCGA053392GA053393
length1,006840
definitionB6Ng01-244D04.b B6Ng01-244D04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctagggatatgccagtgtattgggatgggggaattctatatag
gcatttttcccatggccaagacatgtatcagaagagaggaacagggttta
aaatgaagtaagataaaataaaataaaataataaaataaaataaaataaa
gagaaaaataccctccctcaaaaaaataaaaaccaccaccaccaacaaaa
agatgttagaagaattcttagctcaagtatatttatgctgtgcatggttc
ccagaagtaggaatggttaatatacatatgacatgagaaagagagagaaa
gaataagtttcagaaaagcagttgtcccctgtctgggatgagtcagcaaa
aatgaaagaaaatccatttcccagatctcctagggacaggaggaaatcag
gagatgtcctgtttcctctctggctcctactggagatatccttagttctg
attcttccttctctgtgtattgtctgtccttggtacaccaatctgtctat
gtgtgacaattttgtctgaatgactgttgttctatgtttcatgttcaaaa
gaaaaaaatggttaaaactttatctactagctataaatctattagtttag
taggctgtctaagtttgcacagagcagaaactcataagttaccttacact
gtagttgggagtcaagcacagctggagaaaaggggctcttaaaggggcca
gcagcttttcaatttctatgacaagtaaactgatggctgttttctcctag
aaaattctctgaaattgtgattattgggtttagaagatactttcttagaa
ttatagataaaaaaagtaaaaattgtgtatgatctcaatgtataaaatgt
atgtagccacttcattgttgtttctgacttgttttaaaggtataaatgtg
ttcttcatgtcttagagtattgtcttatcagttattgggtatcactaaaa
aattgtaacattgggtaacagaaagttagcacaaaactggtaactcaggt
tggagt
cggaattcaaaaagttattcaccaaaaaaccaaacaacccaatcaaaaaa
tggggtatagaactaaacagggaattcaaaactaagaaatcttgattggc
tgagaagcacctagagaaatgttcaaagtctttagtgatcagagaaatgc
aaatcaaaatgaccctgagattccaccttatatatgccaatcagaatggc
taagatcaaattcttaggtgacaacacatattggagaggatgtggagaaa
gaggaacactcctccactgctggtggaattgcaaacttatacaactctgg
aaatcaatctggatgttccttagaaaataggaaacagatttccctgacga
cccagctttaccactcttgggaatatacccaaaagatgctccattatgcc
acaggggcacatgaaccactatgttcatagaatccttatttgcgatatca
agaagcaggaaataatctagatatcccacaacagaagaatggatgcagac
aatgtggttcatttacacaatggaatactactaagctattaagaatgagg
acatcctgagttttgcaagcaaatgaatggaactagaaaatatcatcctg
agtgaggtaactcatacctaaaaaggacatgcttggtatgtactcactaa
tatgtggatatttagccaaaaaaaaaaaaaaaaaaaaaaaagcagaacgt
agaaatactcaaagatacagcccacagaactcccaaatgtcaaggagctg
aagtgctcaagtgaagatgcctcatccccaactttaagaagggggggaga
gacctggggagggaagaaattgggggggcaatgtgttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23080443_23080976
seq2: B6Ng01-244D04.b_75_618

seq1  ATGGGGGAATTCTATATAGGCATTTGT-CCACAGCCAGAAGCTGCATCAG  49
      ||||||||||||||||||||||||| | |||  ||||  |  || |||||
seq2  ATGGGGGAATTCTATATAGGCATTTTTCCCATGGCCAAGACATGTATCAG  50

seq1  GTGAGAGGAGCAGGGTTTAAAATAAAATAAAATAAAATAAAATAA---AA  96
        ||||||| ||||||||||||| || ||| ||||||||||||||   ||
seq2  AAGAGAGGAACAGGGTTTAAAATGAAGTAAGATAAAATAAAATAAAATAA  100

seq1  TAAAATAAAATAAAAT---GAGAAAAATA-----CCAAAAAAAAAAAAAA  138
      ||||||||||||||||   ||||||||||     ||  ||||||| ||||
seq2  TAAAATAAAATAAAATAAAGAGAAAAATACCCTCCCTCAAAAAAATAAAA  150

seq1  AAAAACAACAGCAAAAATAGGATGTTACAAAAGTTCTTAGCTCAAGTATA  188
      |  | || || ||| || | ||||||| || | |||||||||||||||||
seq2  ACCACCACCACCAACAAAAAGATGTTAGAAGAATTCTTAGCTCAAGTATA  200

seq1  TTTATGCTGTGCATGGTTCCCAGAAGTAGGAATTG-TAATA---------  228
      ||||||||||||||||||||||||||||||||| | |||||         
seq2  TTTATGCTGTGCATGGTTCCCAGAAGTAGGAATGGTTAATATACATATGA  250

seq1  ------------GGAGACAGAATAGGTTTCAGAAAAGCAGTTGTCCCCTG  266
                   |||| |||||| |||||||||||||||||||||||||
seq2  CATGAGAAAGAGAGAGAAAGAATAAGTTTCAGAAAAGCAGTTGTCCCCTG  300

seq1  TCTGGGAAGTGTTAGCAAAAGAGGAAGAAAATGGATTTCAGAGCTCTCCT  316
      ||||||| | || |||||||  | ||||||||  |||||  || ||||||
seq2  TCTGGGATGAGTCAGCAAAAATGAAAGAAAATCCATTTCCCAGATCTCCT  350

seq1  AGAGACAGGAAGAAATTAGGAGATGTCCTGCTTCCTCTCTGGCTCCTACA  366
      || ||||||| ||||| ||||||||||||| |||||||||||||||||| 
seq2  AGGGACAGGAGGAAATCAGGAGATGTCCTGTTTCCTCTCTGGCTCCTACT  400

seq1  GGAGATATCCTTGGTTCTGGTTACATCAAGTTCTCTTCCCTCTCTGTGTG  416
      |||||||||||| |||||| |            |||||| ||||||||| 
seq2  GGAGATATCCTTAGTTCTGAT------------TCTTCCTTCTCTGTGTA  438

seq1  TTGTCTGTCCATGGTACACCACCAATCTGTCCATGTGTGTCAATTTTTTG  466
      |||||||||| |||||   |||||||||||| ||||||| |||||     
seq2  TTGTCTGTCCTTGGTA---CACCAATCTGTCTATGTGTGACAATT-----  480

seq1  TTTCATTGTCTGAATGACTGTTGTTTTATGTTTCATGTTCAAAA-CAAAA  515
           |||||||||||||||||||| ||||||||||||||||||  ||||
seq2  -----TTGTCTGAATGACTGTTGTTCTATGTTTCATGTTCAAAAGAAAAA  525

seq1  AGTGGTTAAAACTTTATCT  534
      | |||||||||||||||||
seq2  AATGGTTAAAACTTTATCT  544