BAC Information

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BAC

Clone NameB6Ng01-245D20
Chromosome13 (Build37)
Map Location 90,320,377 - 90,435,496
singlet/doubletdoublet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
Downstream geneLOC624190, EG435376, Rps23, Atg10, LOC100042959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245D20.bB6Ng01-245D20.g
ACCGA054176GA054177
length1,1741,154
definitionB6Ng01-245D20.b B6Ng01-245D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,434,298 - 90,435,496)(90,320,377 - 90,321,552)
sequence
gaattcattgtatgtgtcctgatctgaattttgggaacatctggcccttt
acagaagcgacaaatgctctcaactactgagccatttctctatcttcaga
attacagctttcagactgaacttcaccttaggtaacagtactatgaatca
aggtcatagtctaagcaagccagttgagttaaatcccttaccccagaaat
aacacctgaaggtaggcattttcttttccccagttttgagatgaggagtc
tgaggccaatgacaaagctgagcttggactcagtcatgatttaggtgttt
agacttagtcagggtttttgattgcttatacaaatcactgtgaccaaatc
aaggtggaaggaaaagggtttatttggcttacacttccaggtcacaatcc
atcattagaggaagtcaggacaagaactcaagcagggcaggaatctggag
gcaggagctgaggcagaggccatggagggttggtgcctgcctcctggttt
gcctcccctggcttgctcagccagcctgacttggaacccagaactactag
tctgaggatgacaccacccacaatgggctggataccttggaggcatttcc
tcattagagactcctgtctcttgaagactctagcttgtgtcaagctgaca
acaaagccagccaaatagcaccatacaaagagacaccagtaagcccctcc
acactagggtcctcccaagaaagcttctgacatctttacagacttttggt
tttttcaggaaggcttcggtcattggcttcttcttatctttcacttggtt
atttggtctgcggcttatccagcagtcccacaggagaatctactgatttt
taagcgcaagatgcatgaggaaagcagtgacatcatagaaaagagcagaa
aatgaaacttgcagataatttgtcattttagcctgcaatgaatgtataaa
cgtgcttggtacgttccaagcaggattttgaaattgcatatatgcgagca
tccagggaaggttattccagctccctgtaacatactataggagcatatcc
tgggggctgtcagacattctctttaaagcaccccagtgacttgatgcagg
tggtcaggggcgcaattgtgaaacttgttggtaatggcaagtgcaggaaa
ctagccaatccgaaagaaatagtc

gaattctattacactctttattggtttcctttcccacatttgaatcacaa
tgtctatattctatcagcacagaatgaaaatccctggatattctctgtgg
acacttgcaaggtctccagtttgcatcactatattctgttcttgagttgc
tagaatccctgcgagctcaggatgtgacagaatatgacttcatccatgta
gaaagaccccaaattaagaaagttgaatacttctgcttttgttgacccag
taatagtttcccattttggtaaagggcatcaatttcctttgagaatacgc
atgttcttttttgattttgcttatataaattattatataaaatgtagttt
tctttgaagtgaactcatggttcatagcatatctcatcccttggaccata
gctattggctaagaaatgggaagacgacacaaactacgttattagaagcc
aactcagaagtgatggagatgtgggataggtcctgtctgctggagggttg
ggctgcagaggcgggaatcaacttggaactgccagaagccagggaaagag
tccacattaaaatgaagtcaggatagagaaaagcaggagataagagagat
gggtattattacttgcgctttgtttccagacatgcttagactttccaaga
gtgtcagtaaacaagcctttgcagtcatttaatccagtttaacaatggga
cagccttgctgacagtctgctgacacactgttctccatggtttgataaag
ctggggaaaaatgaaaagaatccgaaacacattaaaatctgaaaaatcat
ccatcaaatgtgtaccgtgtaccgtagaagatgatttatttagctggatg
tgatggtgcatgcctacaatcaaagtactcaaagggctgaggcaggacga
atgggaattggaggccagctcaactacacagctaaatattgtcctgacct
aaaacattgtttattcagactattggaaatatgtgctccaattatggtat
ctaaaagaacacaggaaagtaccaactgattcatcctcagttttctattc
tgattctttttaagatttcttggcatgcatacgtaataataggacctaga
aaaaaggaaaggtggaatagtatgcactaaacctaaaaatctctgtatcc
tctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90434298_90435496
seq2: B6Ng01-245D20.b_50_1223 (reverse)

seq1  GACTATTCTTTTGGGATTTGCTAGTTCTCCTTGCCAAACTCTGCATTTAC  50
      |||||||  ||| ||||| ||||||| ||| |||   ||| |||  ||||
seq2  GACTATTTCTTTCGGATTGGCTAGTT-TCC-TGC---ACT-TGCCATTAC  44

seq1  AAACATGTTTCACCAGATGCGCCCCTTGAACCACCTGCATCCAGGTCACT  100
       |||| |||||| ||  |||||||||   ||||||||||| || ||||||
seq2  CAACAAGTTTCA-CAATTGCGCCCCT--GACCACCTGCAT-CAAGTCACT  90

seq1  GGGGGTTGCTTTAAAGAGGATGGTCCTGGACAAGCCCCCA-GATATGCTC  149
      ||||  |||||||||||| || |||   ||| |||||||| |||||||||
seq2  GGGG--TGCTTTAAAGAGAAT-GTC--TGAC-AGCCCCCAGGATATGCTC  134

seq1  TATTAGTATGTTACAGGGGAAGCTGGGAAATAACCTTTCCTGGGAATGCT  199
         |||||||||||||||  ||||||  ||||||||| |||||  |||||
seq2  CTATAGTATGTTACAGGG--AGCTGG--AATAACCTTCCCTGG--ATGCT  178

seq1  CGCATATATTGCAATTTCAAAATCCCTGCTTTGGAACGTACCAAGCACGT  249
      |||||||| |||||||||||||| ||||| ||||||||||||||||||||
seq2  CGCATATA-TGCAATTTCAAAAT-CCTGC-TTGGAACGTACCAAGCACGT  225

seq1  TTATACATTCATTTGCAGGCTAAAATGACAAATTATCTGCAAGTTTCATT  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTATACATTCA-TTGCAGGCTAAAATGACAAATTATCTGCAAGTTTCATT  274

seq1  TTCTGCTCTTTTCTATGATGTCACTGCTTTCCTCATGCATCTTGCGCTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCTTTTCTATGATGTCACTGCTTTCCTCATGCATCTTGCGCTTA  324

seq1  AAAATCAGTAGATTCTCCTGTGGGACTGCTGGATAAGCCGCAGACCAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTAGATTCTCCTGTGGGACTGCTGGATAAGCCGCAGACCAAAT  374

seq1  AACCAAGTGAAAGATAAGAAGAAGCCAATGACCGAAGCCTTCCTGAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTGAAAGATAAGAAGAAGCCAATGACCGAAGCCTTCCTGAAAAA  424

seq1  ACCAAAAGTCTGTAAAGATGTCAGAAGCTTTCTTGGGAGGACCCTAGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGTCTGTAAAGATGTCAGAAGCTTTCTTGGGAGGACCCTAGTGT  474

seq1  GGAGGGGCTTACTGGTGTCTCTTTGTATGGTGCTATTTGGCTGGCTTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCTTACTGGTGTCTCTTTGTATGGTGCTATTTGGCTGGCTTTGT  524

seq1  TGTCAGCTTGACACAAGCTAGAGTCTTCAAGAGACAGGAGTCTCTAATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCTTGACACAAGCTAGAGTCTTCAAGAGACAGGAGTCTCTAATGA  574

seq1  GGAAATGCCTCCAAGGTATCCAGCCCATTGTGGGTGGTGTCATCCTCAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCCTCCAAGGTATCCAGCCCATTGTGGGTGGTGTCATCCTCAGA  624

seq1  CTAGTAGTTCTGGGTTCCAAGTCAGGCTGGCTGAGCAAGCCAGGGGAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGTTCTGGGTTCCAAGTCAGGCTGGCTGAGCAAGCCAGGGGAGGC  674

seq1  AAACCAGGAGGCAGGCACCAACCCTCCATGGCCTCTGCCTCAGCTCCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGAGGCAGGCACCAACCCTCCATGGCCTCTGCCTCAGCTCCTGC  724

seq1  CTCCAGATTCCTGCCCTGCTTGAGTTCTTGTCCTGACTTCCTCTAATGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGATTCCTGCCCTGCTTGAGTTCTTGTCCTGACTTCCTCTAATGAT  774

seq1  GGATTGTGACCTGGAAGTGTAAGCCAAATAAACCCTTTTCCTTCCACCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGACCTGGAAGTGTAAGCCAAATAAACCCTTTTCCTTCCACCTT  824

seq1  GATTTGGTCACAGTGATTTGTATAAGCAATCAAAAACCCTGACTAAGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGTCACAGTGATTTGTATAAGCAATCAAAAACCCTGACTAAGTCT  874

seq1  AAACACCTAAATCATGACTGAGTCCAAGCTCAGCTTTGTCATTGGCCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTAAATCATGACTGAGTCCAAGCTCAGCTTTGTCATTGGCCTCA  924

seq1  GACTCCTCATCTCAAAACTGGGGAAAAGAAAATGCCTACCTTCAGGTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCATCTCAAAACTGGGGAAAAGAAAATGCCTACCTTCAGGTGTT  974

seq1  ATTTCTGGGGTAAGGGATTTAACTCAACTGGCTTGCTTAGACTATGACCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGGGTAAGGGATTTAACTCAACTGGCTTGCTTAGACTATGACCT  1024

seq1  TGATTCATAGTACTGTTACCTAAGGTGAAGTTCAGTCTGAAAGCTGTAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATAGTACTGTTACCTAAGGTGAAGTTCAGTCTGAAAGCTGTAAT  1074

seq1  TCTGAAGATAGAGAAATGGCTCAGTAGTTGAGAGCATTTGTCGCTTCTGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGATAGAGAAATGGCTCAGTAGTTGAGAGCATTTGTCGCTTCTGT  1124

seq1  AAAGGGCCAGATGTTCCCAAAATTCAGATCAGGACACATACAATGAATTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCAGATGTTCCCAAAATTCAGATCAGGACACATACAATGAATTC  1174


seq1: chr13_90320377_90321552
seq2: B6Ng01-245D20.g_65_1218

seq1  GAATTCTATTACACTCTTTATTGGTTTCCTTTCCCACATTTGAATCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTACACTCTTTATTGGTTTCCTTTCCCACATTTGAATCACAA  50

seq1  TGTCTATATTCTATCAGCACAGAATGAAAATCCCTGGATATTCTCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATATTCTATCAGCACAGAATGAAAATCCCTGGATATTCTCTGTGG  100

seq1  ACACTTGCAAGGTCTCCAGTTTGCATCACTATATTCTGTTCTTGAGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCAAGGTCTCCAGTTTGCATCACTATATTCTGTTCTTGAGTTGC  150

seq1  TAGAATCCCTGCGAGCTCAGGATGTGACAGAATATGACTTCATCCATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCCTGCGAGCTCAGGATGTGACAGAATATGACTTCATCCATGTA  200

seq1  GAAAGACCCCAAATTAAGAAAGTTGAATACTTCTGCTTTTGTTGACCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCCCAAATTAAGAAAGTTGAATACTTCTGCTTTTGTTGACCCAG  250

seq1  TAATAGTTTCCCATTTTGGTAAAGGGCATCAATTTCCTTTGAGAATACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTTCCCATTTTGGTAAAGGGCATCAATTTCCTTTGAGAATACGC  300

seq1  ATGTTCTTTTTTGATTTTGCTTATATAAATTATTATATAAAATGTAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTTTTGATTTTGCTTATATAAATTATTATATAAAATGTAGTTT  350

seq1  TCTTTGAAGTGAACTCATGGTTCATAGCATATCTCATCCCTTGGACCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAGTGAACTCATGGTTCATAGCATATCTCATCCCTTGGACCATA  400

seq1  GCTATTGGCTAAGAAATGGGAAGACGACACAAACTACGTTATTAGAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGGCTAAGAAATGGGAAGACGACACAAACTACGTTATTAGAAGCC  450

seq1  AACTCAGAAGTGATGGAGATGTGGGATAGGTCCTGTCTGCTGGAGGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAGTGATGGAGATGTGGGATAGGTCCTGTCTGCTGGAGGGTTG  500

seq1  GGCTGCAGAGGCGGGAATCAACTTGGAACTGCCAGAAGCCAGGGAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGAGGCGGGAATCAACTTGGAACTGCCAGAAGCCAGGGAAAGAG  550

seq1  TCCACATTAAAATGAAGTCAGGATAGAGAAAAGCAGGAGATAAGAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTAAAATGAAGTCAGGATAGAGAAAAGCAGGAGATAAGAGAGAT  600

seq1  GGGTATTATTACTTGCGCTTTGTTTCCAGACATGCTTAGACTTTCCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTATTACTTGCGCTTTGTTTCCAGACATGCTTAGACTTTCCAAGA  650

seq1  GTGTCAGTAAACAAGCCTTTGCAGTCATTTAATCCAGTTTAACAATGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGTAAACAAGCCTTTGCAGTCATTTAATCCAGTTTAACAATGGGA  700

seq1  CAGCCTTGCTGACAGTCTGCTGACACACTGTTCTCCATGGTTTGATAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGCTGACAGTCTGCTGACACACTGTTCTCCATGGTTTGATAAAG  750

seq1  CTGGGGAAAAATGAAAAGAATCCGAAACACATTAAAATCTGAAAAATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAAAATGAAAAGAATCCGAAACACATTAAAATCTGAAAAATCAT  800

seq1  CCATCAAATGTGTACCGTGTACCGTAGAAGATGATTTATTTAGCTGGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAATGTGTACCGTGTACCGTAGAAGATGATTTATTTAGCTGGATG  850

seq1  TGATGGTGCATGCCTACAATCAAAGTACTCAAAGGGCTGAGGCAGGACGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGCATGCCTACAATCAAAGTACTCAAAGGGCTGAGGCAGGACGA  900

seq1  ATGGGAATTGGAGGCCAGCTCAACTACACAGCTAAATATTGTCCTGACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATTGGAGGCCAGCTCAACTACACAGCTAAATATTGTCCTGACCT  950

seq1  AAAAACATTGTTTATTCAGACTATTGGAAATAATGTGCTCCAAATTAATG  1000
       |||||||||||||||||||||||||||||| |||||||||||  | |||
seq2  -AAAACATTGTTTATTCAGACTATTGGAAAT-ATGTGCTCCAA--TTATG  996

seq1  GTATCTAAAAAGAACACAGGGAAAGTACCAACTTGATTCATTCCTTCAAG  1050
      |||||| ||||||||||| ||||||||||||| ||||||| ||||   ||
seq2  GTATCT-AAAAGAACACA-GGAAAGTACCAAC-TGATTCA-TCCT--CAG  1040

seq1  TTTTCTATCTGGATTCTTTT--AGATTTTCTTTGCATTGCATACGTTAAT  1098
      ||||||||   |||||||||  ||| |||||| ||| |||||||| ||||
seq2  TTTTCTATTCTGATTCTTTTTAAGA-TTTCTTGGCA-TGCATACG-TAAT  1087

seq1  AAATAAGACATAGAAAAAAAGAAAGTTGGAATTTAGTTATTGCCACTTAA  1148
       |||| ||| ||||||||| ||||| |||||  ||| |||   ||||   
seq2  -AATAGGACCTAGAAAAAAGGAAAGGTGGAA--TAG-TAT--GCACT---  1128

seq1  ACACCTAAAAAAAATCTCTGTA-CCTCTC  1176
      | ||||   ||||||||||||| ||||||
seq2  AAACCT---AAAAATCTCTGTATCCTCTC  1154


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