BAC Information

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BAC

Clone NameB6Ng01-246H13
Chromosome13 (Build37)
Map Location 63,597,612 - 63,711,541
singlet/doubletdoublet
Overlap genePtch1
Upstream gene6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc
Downstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246H13.bB6Ng01-246H13.g
ACCGA055078GA055079
length1,1191,066
definitionB6Ng01-246H13.b B6Ng01-246H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,710,439 - 63,711,541)(63,597,612 - 63,598,670)
sequence
gaattctctctggggccaggatacacaaagtgcccagggacaaatcaaac
ccagtttccactcccttctacaggaggtgcgtagtctgggaacccccttt
actctggcctttactaaatttctgaggacaggccttgtgctagcctgctg
gccacgtcctgcacaacagcccccagaatccatgtccattcatcggatgc
tagatgttcctcccttaggagaaagaggctgctggaaacccagacaccct
atagagggaggggactggtgccaagacgtctggggcccctcccccccacc
acacacaccctaccccgggaaacaggaagcacagccagacttgtcactgt
ggcctaaagtaggatggatggtcccggtaaaccgatcctgctaatgtaac
cataggtgctatttcgtataaatacatccacccagacattccccatcaac
acagcttctttcccctgaggtctggcttcccgcgcggcagcctgaaacct
ctgagttagtcaacagcctcagtggatagcttagagtttgctgagtgtct
ttgccatagtacatacagagccccccagtctgccttttcttcatttatca
ttttctataatgtacctatcacgtcctctgttctctctggtctttgccaa
actaaacagccttggttttactaatctctcctagcatgaaggcaaagacc
ataaatctaatcgccattagaaagacggcttcccaagcacaccttgggcg
ctcagtattgcacagactgtggaaggagtgctgtcactgtgtgcatcttt
aaacacagatgttgctacaaagtgtctattgaagagtttggcttgtaaat
ttgcctgcctgctaaagaaataaagtttattgaattttctgctgcccaca
ccctctctaaatgtctttatcctttgtgtcaaagtgtattaaagttaaat
gaaatacaggaaaagaattagataatgggagaacacaacactacctttgc
caaggaataataataaaaattaaattcattaagcttcctgaaaccaataa
tgaagggctttcgttggctcagtaaacataattaatcttaacaaataaat
ttttcgttgttttgtttga
gaattcaaggccagcctgatctatagagagttccaggacacccatggata
gagagagatcatgtctcaactaacaaacatttaaaattttttcagtaaaa
tataagaggccaaaaaaaaatccagtctgtggtttgagagcagaagaatc
cataagcactaagtggttggtgtgatcgtccacttggctgtattttcttt
gtcttcttttttatccagagtcttttaacaaccagttcaaacaccgtgaa
agagttcccaggagctccgacctatacttcaccctagtttctaagattca
gaaagggcacatttttgaagtatcagaactggccccgaaattctagctcg
gttttccttttcctctgagttctgtaagttatcctaaagctggtcattct
tcgtagttaagagtgtgctcatgcgcatgcgcaggcgcacacgcacctgt
gttgcctagacgagtcaaagctggctcccactgccgtggaggtctgcttc
tggtttagtgttttagagtaagaaaagggccattaaaattctctctgatg
gtggagtcagccctggtgggggaggggacagacgtagacaagggaagaaa
tttcctggtaagcagagcccacttaaaaattttccctttctttgtttctc
actttttccccccttgaagctgctctccctggagtcaaagcattttacaa
aacaaaccactccaaagctttcaagttcgagggaaagcccaagcaaagtt
aaattaacatgaaggttctcacaaaagttaattaacatgaaggactcaca
aaagctgtctgttgggcatctgctggcctgccattgtgcagcggtccctt
tgtagcgacagccgcgagcccagtccgacctcgtgcggcatctggggctt
ctgaagcctctatcttcccacgcagtacgcaggaatcttccaccgagctg
tctacagggcaattacctctgctgctggaaatgaagggaagaaaggctgt
cttagacgtgccagcttgagatggaaaagaaaggaagggaccaattggag
gtgccaggggcagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63710439_63711541
seq2: B6Ng01-246H13.b_46_1164 (reverse)

seq1  TCAAACAAAACAAAAGGAAAAATTATGT----AGAT--AATATGTTTAAC  44
      ||||||||||| || | |||| |||| |    ||||  | ||||||| ||
seq2  TCAAACAAAAC-AACGAAAAATTTATTTGTTAAGATTAATTATGTTT-AC  48

seq1  TGAAGCCACG-AAGCCC-TCA-TATTGG-TTCAGGAAGC-TAATGAAATT  89
      |||  | ||| |||||| ||| |||||| |||||||||| ||||||| ||
seq2  TGAGCCAACGAAAGCCCTTCATTATTGGTTTCAGGAAGCTTAATGAATTT  98

seq1  TAATTTTA-TATTAT--CCTGGCAAAGGTAGTGTTGTG-TCTCC--ATAT  133
       | ||||| ||||||  | ||||||||||||||||||| |||||   |||
seq2  AATTTTTATTATTATTCCTTGGCAAAGGTAGTGTTGTGTTCTCCCATTAT  148

seq1  CTAATTC-TTTCCTGTATTTCATTTAAACTTAATACACCTTTGACACAAA  182
      ||||||| |||||||||||||||||||  |||||||| ||||||||||||
seq2  CTAATTCTTTTCCTGTATTTCATTTAACTTTAATACA-CTTTGACACAAA  197

seq1  GGATAAAGACA-TTAGAGAGGGTGTGGGCAGCAGAAAATTCAATAAACTT  231
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGACATTTAGAGAGGGTGTGGGCAGCAGAAAATTCAATAAACTT  247

seq1  TATTTCTTTAGCAGGCAGGCAAATTTACAAGCCAAACTCTTCAATAGACA  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTAGCAGGCAGGCAAATTTACAAGCCAAACTCTTCAATAGACA  297

seq1  CTTTGTAGCAACATCTGTGTTTAAAGATGCACACAGTGACAGCACTCCTT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGCAACATCTGTGTTTAAAGATGCACACAGTGACAGCACTCCTT  347

seq1  CCACAGTCTGTGCAATACTGAGCGCCCAAGGTGTGCTTGGGAAGCCGTCT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCTGTGCAATACTGAGCGCCCAAGGTGTGCTTGGGAAGCCGTCT  397

seq1  TTCTAATGGCGATTAGATTTATGGTCTTTGCCTTCATGCTAGGAGAGATT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGGCGATTAGATTTATGGTCTTTGCCTTCATGCTAGGAGAGATT  447

seq1  AGTAAAACCAAGGCTGTTTAGTTTGGCAAAGACCAGAGAGAACAGAGGAC  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACCAAGGCTGTTTAGTTTGGCAAAGACCAGAGAGAACAGAGGAC  497

seq1  GTGATAGGTACATTATAGAAAATGATAAATGAAGAAAAGGCAGACTGGGG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGGTACATTATAGAAAATGATAAATGAAGAAAAGGCAGACTGGGG  547

seq1  GGCTCTGTATGTACTATGGCAAAGACACTCAGCAAACTCTAAGCTATCCA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTATGTACTATGGCAAAGACACTCAGCAAACTCTAAGCTATCCA  597

seq1  CTGAGGCTGTTGACTAACTCAGAGGTTTCAGGCTGCCGCGCGGGAAGCCA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTGTTGACTAACTCAGAGGTTTCAGGCTGCCGCGCGGGAAGCCA  647

seq1  GACCTCAGGGGAAAGAAGCTGTGTTGATGGGGAATGTCTGGGTGGATGTA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGGGGAAAGAAGCTGTGTTGATGGGGAATGTCTGGGTGGATGTA  697

seq1  TTTATACGAAATAGCACCTATGGTTACATTAGCAGGATCGGTTTACCGGG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACGAAATAGCACCTATGGTTACATTAGCAGGATCGGTTTACCGGG  747

seq1  ACCATCCATCCTACTTTAGGCCACAGTGACAAGTCTGGCTGTGCTTCCTG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCATCCTACTTTAGGCCACAGTGACAAGTCTGGCTGTGCTTCCTG  797

seq1  TTTCCCGGGGTAGGGTGTGTGTGGTGGGGGGGAGGGGCCCCAGACGTCTT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCGGGGTAGGGTGTGTGTGGTGGGGGGGAGGGGCCCCAGACGTCTT  847

seq1  GGCACCAGTCCCCTCCCTCTATAGGGTGTCTGGGTTTCCAGCAGCCTCTT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGTCCCCTCCCTCTATAGGGTGTCTGGGTTTCCAGCAGCCTCTT  897

seq1  TCTCCTAAGGGAGGAACATCTAGCATCCGATGAATGGACATGGATTCTGG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGGGAGGAACATCTAGCATCCGATGAATGGACATGGATTCTGG  947

seq1  GGGCTGTTGTGCAGGACGTGGCCAGCAGGCTAGCACAAGGCCTGTCCTCA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTGTGCAGGACGTGGCCAGCAGGCTAGCACAAGGCCTGTCCTCA  997

seq1  GAAATTTAGTAAAGGCCAGAGTAAAGGGGGTTCCCAGACTACGCACCTCC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTAGTAAAGGCCAGAGTAAAGGGGGTTCCCAGACTACGCACCTCC  1047

seq1  TGTAGAAGGGAGTGGAAACTGGGTTTGATTTGTCCCTGGGCACTTTGTGT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGGGAGTGGAAACTGGGTTTGATTTGTCCCTGGGCACTTTGTGT  1097

seq1  ATCCTGGCCCCAGAGAGAATTC  1103
      ||||||||||||||||||||||
seq2  ATCCTGGCCCCAGAGAGAATTC  1119

seq1: chr13_63597612_63598670
seq2: B6Ng01-246H13.g_69_1134

seq1  GAATTCAAGGCCAGCCTGATCTATAGAGAGTTCCAGGACACCCATGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGATCTATAGAGAGTTCCAGGACACCCATGGATA  50

seq1  GAGAGAGATCATGTCTCAACTAACAAACATTTAAAATTTTTTCAGTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATCATGTCTCAACTAACAAACATTTAAAATTTTTTCAGTAAAA  100

seq1  TATAAGAGGCCAAAAAAAAATCCAGTCTGTGGTTTGAGAGCAGAAGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGGCCAAAAAAAAATCCAGTCTGTGGTTTGAGAGCAGAAGAATC  150

seq1  CATAAGCACTAAGTGGTTGGTGTGATCGTCCACTTGGCTGTATTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCACTAAGTGGTTGGTGTGATCGTCCACTTGGCTGTATTTTCTTT  200

seq1  GTCTTCTTTTTTATCCAGAGTCTTTTAACAACCAGTTCAAACACCGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTTTTATCCAGAGTCTTTTAACAACCAGTTCAAACACCGTGAA  250

seq1  AGAGTTCCCAGGAGCTCCGACCTATACTTCACCCTAGTTTCTAAGATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCCAGGAGCTCCGACCTATACTTCACCCTAGTTTCTAAGATTCA  300

seq1  GAAAGGGCACATTTTTGAAGTATCAGAACTGGCCCCGAAATTCTAGCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCACATTTTTGAAGTATCAGAACTGGCCCCGAAATTCTAGCTCG  350

seq1  GTTTTCCTTTTCCTCTGAGTTCTGTAAGTTATCCTAAAGCTGGTCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTTTTCCTCTGAGTTCTGTAAGTTATCCTAAAGCTGGTCATTCT  400

seq1  TCGTAGTTAAGAGTGTGCTCATGCGCATGCGCAGGCGCACACGCACCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGTTAAGAGTGTGCTCATGCGCATGCGCAGGCGCACACGCACCTGT  450

seq1  GTTGCCTAGACGAGTCAAAGCTGGCTCCCACTGCCGTGGAGGTCTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTAGACGAGTCAAAGCTGGCTCCCACTGCCGTGGAGGTCTGCTTC  500

seq1  TGGTTTAGTGTTTTAGAGTAAGAAAAGGGCCATTAAAATTCTCTCTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGTGTTTTAGAGTAAGAAAAGGGCCATTAAAATTCTCTCTGATG  550

seq1  GTGGAGTCAGCCCTGGTGGGGGAGGGGACAGACGTAGACAAGGGAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTCAGCCCTGGTGGGGGAGGGGACAGACGTAGACAAGGGAAGAAA  600

seq1  TTTCCTGGTAAGCAGAGCCCACTTAAAAATTTTCCCTTTCTTTGTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTAAGCAGAGCCCACTTAAAAATTTTCCCTTTCTTTGTTTCTC  650

seq1  ACTTTTTCCCCCCTTGAAGCTGCTCTCCCTGGAGTCAAAGCATTTTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCCCCCCTTGAAGCTGCTCTCCCTGGAGTCAAAGCATTTTACAA  700

seq1  AACAAACCACTCCAAAGCTTTCAAG-TCGAGGGAAAGCCCAAGCAAAGTT  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACAAACCACTCCAAAGCTTTCAAGTTCGAGGGAAAGCCCAAGCAAAGTT  750

seq1  -AATTAACATGAAGGTTCTCACAAAAGTTAATTAACATGAAGGACTCACA  798
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACATGAAGGTTCTCACAAAAGTTAATTAACATGAAGGACTCACA  800

seq1  AAAGCTGTCTGTT-GGCATCTGCTGGCCTGCCA-TGTGCAGCGGTCCCTT  846
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  AAAGCTGTCTGTTGGGCATCTGCTGGCCTGCCATTGTGCAGCGGTCCCTT  850

seq1  TGTAGCGACAGCCGCGAGCCCAGTCCGACCTCGTGCGGCATCTGGGGC-T  895
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTAGCGACAGCCGCGAGCCCAGTCCGACCTCGTGCGGCATCTGGGGCTT  900

seq1  CTGAGGCCTCCATC-TCCCACGCAGTACGCAGGAATCTTCCACCGAGCTG  944
      |||| ||||| ||| |||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCTCTATCTTCCCACGCAGTACGCAGGAATCTTCCACCGAGCTG  950

seq1  TCCACAGGGCAAT--ACTCTGCTGCTGGAAATGAA-GGAAGAAAGGCTG-  990
      || ||||||||||   ||||||||||||||||||| ||||||||||||| 
seq2  TCTACAGGGCAATTACCTCTGCTGCTGGAAATGAAGGGAAGAAAGGCTGT  1000

seq1  CTTAGACGTGCCAGCTTGAGAAGGAAAAAGAAAGGAA-GGACCAAATTTG  1039
      ||||||||||||||||||||| || |||||||||||| |||||||  |||
seq2  CTTAGACGTGCCAGCTTGAGATGG-AAAAGAAAGGAAGGGACCAA--TTG  1047

seq1  GAGGGGGCAGGGGGCAGAAA  1059
      |||| | || ||||||||||
seq2  GAGGTGCCA-GGGGCAGAAA  1066