BAC Information

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BAC

Clone NameB6Ng01-246L14
Chromosome13 (Build37)
Map Location 6,182,697 - 6,325,104
singlet/doubletdoublet
Overlap geneLOC100039388, LOC100039395
Upstream gene1700016G22Rik, Klf6
Downstream genePitrm1, Pfkp, LOC100039532, LOC667611
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246L14.bB6Ng01-246L14.g
ACCGA055257GA055258
length1,1771,164
definitionB6Ng01-246L14.b B6Ng01-246L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,323,937 - 6,325,104)(6,182,697 - 6,183,840)
sequence
gaattcagcgatagagggctgacttagcacacataaaaccctgagtttga
tcctctgcattgcagcaaaatatcatgataatgaaggtaaaatgctgcat
gagttttaaaatctgcatgggggcaataggaccccaggagccttcaagtc
taaataaaggtgcagattctagaaagagacaaagcatagtcgtgtgagtg
cagtggctgaggagtgggctcagggagacacatactccctacaggtcctg
gcatttggtctgctgtggaactgaaatcacctctgactttttcctggagg
tcataatgtcatagatgttactgtgctcagtgcctttaaaaatgaggaat
gttagttccttctgtctaacaagagaagagatggtgggatagggagtaga
ggacaggacagttgattcttaaataaatttccctgggtagcacagcagaa
caataaaagcagcttccatcaagaaagaactgggttcaaattctatgtta
gctttaaaggtttcttagccactcctggagatcagttgtgcgaatgtctc
cacttacttccatatctaatataagtgtgtgtctgctggtgaggctatat
gaataatatccactttatggagatttgcaagcactaaatccatatacaca
gaagtcttagcagggtaatcatttgtactcaataaacaaaaccgtaatat
tttctttatcatgctaatccctagtcatcaagaaaaataacagagaatta
taagcccaggggaatgggatcagtgtagaacacttactgtgcctttaaag
aaggtttcatttaagagccttagagataaagtacatgggtctgaagcata
ttaactgtttttctctttaaaccacagaattaactcgtggagctgggctt
tggaaataacatcttggatatcaggaatttctttaatactttgactagga
ggcacagggtccctgatatccactgggccattcctactggccaggaaaaa
aacgtattgtttttccggagaatgattgtggtcctcagctcctcctttag
gccttgccatctggattttgagaaggaagaatcagggtactgggtgcaga
tcagccaatgacaccatagatttttgcaggttataatctcgttagactat
gatccatcttttattaagatctcaaaa

gaattcaatccctaggacctgcatgataaaaaaccagaattggctttctt
atttttttgtctaatctccacttatgacaattttttttctaaagaaagcc
tactgtgcagaatgataggaaagagcaagagtttgactgcaaatgatttt
ctacattctttgagaagagagagatatagaagaaaagtgaaaaagaaata
aggaaatatatctcaggaaacaaaaggaagagaatcaaaattaaatgaat
acatacaaactgttgacttgttcacaagctggcttgatcatgccacagag
gattctgggcctagggaatggtgctaccccaaataggtaagttcttctta
caccagtcaacagcaacaattcctcccagatatgacagcaggccaaccca
aggcaacatcacattgagactcttcacagatgagtctaggttgtgtgaag
ttgacattctaaccatcacagataacatttacatttgtatatttttcttt
tatttctctttatttcatttatttctttatatctccagattccagtatga
tgctagatttaatgaatatgtcatcagagttagataaccattcttttaaa
atccaaggtgtccttcactaactgttctccatttctgatctacttaaatt
gtttttgtttttgtttttgtttttttaccaaggttaaaatagtaaaggtt
ttggcatttgaaaagaggactgagtagaaaatttaatgcttagcctgaaa
ggatcttacacgcgttctcgcaaccggccaggaagaacgcaacaaaccgg
aatcttctgcggcaaaagctttattgcttacatctttcaggagccagaga
gcaagagagcaagagagcaagagcaagagctctattgcttacatctttta
ggagccagagcgcaagagtgcaagagtgcaagtagcaaaggcaagagagc
aagagaatggcgaaaccccatcctttttaaggaagaattattccttccgc
ctaggaacgtggtcactccctgattggcttgcagctcattcggctgagtt
gtcggtcattggggaaggcagagcactatgggggttggaagaaactacct
ttgggcacatggcgcgaaattatttgtttaccacttagaccacaggatgt
cacgcccatcttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6323937_6325104
seq2: B6Ng01-246L14.b_44_1220 (reverse)

seq1  TTTTG-TATCTTAAATAAAAGATGGATCATTAGTCTAAAAGAGATATATA  49
      |||||  ||||| |||||||||||||||| |||||| || ||||| ||||
seq2  TTTTGAGATCTT-AATAAAAGATGGATCA-TAGTCT-AACGAGAT-TATA  46

seq1  ACTTGCAAAAATCTATGTTGTCATTTGCTGATTCTGCAACCCAGTACCCC  99
      || |||||||||||||| ||||||| ||||| ||||| |||||||| |||
seq2  ACCTGCAAAAATCTATGGTGTCATTGGCTGA-TCTGC-ACCCAGTA-CCC  93

seq1  TGATTCTTCCTTCTC-AAATTCAGATGCCAAGGCCTAAAGGA-GAGCTGA  147
      ||||||||||||||| |||| |||||| |||||||||||||| |||||||
seq2  TGATTCTTCCTTCTCAAAATCCAGATGGCAAGGCCTAAAGGAGGAGCTGA  143

seq1  GG-CCACAATCA-TCTCCG--AAAAC-ATACG-TTTTTTCCT-GCCAGTA  190
      || ||||||||| ||||||  ||||| ||||| ||||||||| |||||||
seq2  GGACCACAATCATTCTCCGGAAAAACAATACGTTTTTTTCCTGGCCAGTA  193

seq1  -GAAT-GCCCAGTGGATATCAGGG-CCCTGTGCCTCCTAGTCAAAAGTAT  237
       |||| |||||||||||||||||| ||||||||||||||||| |||||||
seq2  GGAATGGCCCAGTGGATATCAGGGACCCTGTGCCTCCTAGTC-AAAGTAT  242

seq1  T-AAGAAATTCCTGATATCCAAGATGTTATTT-CAAAGCCCAGCT-CACG  284
      | |||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  TAAAGAAATTCCTGATATCCAAGATGTTATTTCCAAAGCCCAGCTCCACG  292

seq1  AGTTAATTCTGTGGTTTAAAGAGAAAAACAGTTAATATGCTTCAGA-CCA  333
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTTAATTCTGTGGTTTAAAGAGAAAAACAGTTAATATGCTTCAGACCCA  342

seq1  TGTACTTTATCTCTAAGGCTCTTAAATGAAACCTTCTTTAAAGGCACAGT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTATCTCTAAGGCTCTTAAATGAAACCTTCTTTAAAGGCACAGT  392

seq1  AAGTGTTCTACACTGATCCCATTCCCCTGGGCTTATAATTCTCTGTTATT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCTACACTGATCCCATTCCCCTGGGCTTATAATTCTCTGTTATT  442

seq1  TTTCTTGATGACTAGGGATTAGCATGATAAAGAAAATATTACGGTTTTGT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGATGACTAGGGATTAGCATGATAAAGAAAATATTACGGTTTTGT  492

seq1  TTATTGAGTACAAATGATTACCCTGCTAAGACTTCTGTGTATATGGATTT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGTACAAATGATTACCCTGCTAAGACTTCTGTGTATATGGATTT  542

seq1  AGTGCTTGCAAATCTCCATAAAGTGGATATTATTCATATAGCCTCACCAG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGCAAATCTCCATAAAGTGGATATTATTCATATAGCCTCACCAG  592

seq1  CAGACACACACTTATATTAGATATGGAAGTAAGTGGAGACATTCGCACAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACTTATATTAGATATGGAAGTAAGTGGAGACATTCGCACAA  642

seq1  CTGATCTCCAGGAGTGGCTAAGAAACCTTTAAAGCTAACATAGAATTTGA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTCCAGGAGTGGCTAAGAAACCTTTAAAGCTAACATAGAATTTGA  692

seq1  ACCCAGTTCTTTCTTGATGGAAGCTGCTTTTATTGTTCTGCTGTGCTACC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTCTTTCTTGATGGAAGCTGCTTTTATTGTTCTGCTGTGCTACC  742

seq1  CAGGGAAATTTATTTAAGAATCAACTGTCCTGTCCTCTACTCCCTATCCC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAATTTATTTAAGAATCAACTGTCCTGTCCTCTACTCCCTATCCC  792

seq1  ACCATCTCTTCTCTTGTTAGACAGAAGGAACTAACATTCCTCATTTTTAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTTCTCTTGTTAGACAGAAGGAACTAACATTCCTCATTTTTAA  842

seq1  AGGCACTGAGCACAGTAACATCTATGACATTATGACCTCCAGGAAAAAGT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGAGCACAGTAACATCTATGACATTATGACCTCCAGGAAAAAGT  892

seq1  CAGAGGTGATTTCAGTTCCACAGCAGACCAAATGCCAGGACCTGTAGGGA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGATTTCAGTTCCACAGCAGACCAAATGCCAGGACCTGTAGGGA  942

seq1  GTATGTGTCTCCCTGAGCCCACTCCTCAGCCACTGCACTCACACGACTAT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTCTCCCTGAGCCCACTCCTCAGCCACTGCACTCACACGACTAT  992

seq1  GCTTTGTCTCTTTCTAGAATCTGCACCTTTATTTAGACTTGAAGGCTCCT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTCTCTTTCTAGAATCTGCACCTTTATTTAGACTTGAAGGCTCCT  1042

seq1  GGGGTCCTATTGCCCCCATGCAGATTTTAAAACTCATGCAGCATTTTACC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCTATTGCCCCCATGCAGATTTTAAAACTCATGCAGCATTTTACC  1092

seq1  TTCATTATCATGATATTTTGCTGCAATGCAGAGGATCAAACTCAGGGTTT  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATCATGATATTTTGCTGCAATGCAGAGGATCAAACTCAGGGTTT  1142

seq1  TATGTGTGCTAAGTCAGCCCTCTATCGCTGAATTC  1168
      |||||||||||||||||||||||||||||||||||
seq2  TATGTGTGCTAAGTCAGCCCTCTATCGCTGAATTC  1177


seq1: chr13_6182697_6183840
seq2: B6Ng01-246L14.g_69_1232

seq1  GAATTCAATCCCTAGGACCTGCATGATAAAAAACCAGAATTGGCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCTAGGACCTGCATGATAAAAAACCAGAATTGGCTTTCTT  50

seq1  ATTTTTTTGTCTAATCTCCACTTATGACAATTTTTTTTCTAAAGAAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGTCTAATCTCCACTTATGACAATTTTTTTTCTAAAGAAAGCC  100

seq1  TACTGTGCAGAATGATAGGAAAGAGCAAGAGTTTGACTGCAAATGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCAGAATGATAGGAAAGAGCAAGAGTTTGACTGCAAATGATTTT  150

seq1  CTACATTCTTTGAGAAGAGAGAGATATAGAAGAAAAGTGAAAAAGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCTTTGAGAAGAGAGAGATATAGAAGAAAAGTGAAAAAGAAATA  200

seq1  AGGAAATATATCTCAGGAAACAAAAGGAAGAGAATCAAAATTAAATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATATATCTCAGGAAACAAAAGGAAGAGAATCAAAATTAAATGAAT  250

seq1  ACATACAAACTGTTGACTTGTTCACAAGCTGGCTTGATCATGCCACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAAACTGTTGACTTGTTCACAAGCTGGCTTGATCATGCCACAGAG  300

seq1  GATTCTGGGCCTAGGGAATGGTGCTACCCCAAATAGGTAAGTTCTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGGCCTAGGGAATGGTGCTACCCCAAATAGGTAAGTTCTTCTTA  350

seq1  CACCAGTCAACAGCAACAATTCCTCCCAGATATGACAGCAGGCCAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCAACAGCAACAATTCCTCCCAGATATGACAGCAGGCCAACCCA  400

seq1  AGGCAACATCACATTGAGACTCTTCACAGATGAGTCTAGGTTGTGTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACATCACATTGAGACTCTTCACAGATGAGTCTAGGTTGTGTGAAG  450

seq1  TTGACATTCTAACCATCACAGATAACATTTACATTTGTATATTTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTCTAACCATCACAGATAACATTTACATTTGTATATTTTTCTTT  500

seq1  TATTTCTCTTTATTTCATTTATTTCTTTATATCTCCAGATTCCAGTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTTTATTTCATTTATTTCTTTATATCTCCAGATTCCAGTATGA  550

seq1  TGCTAGATTTAATGAATATGTCATCAGAGTTAGATAACCATTCTTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGATTTAATGAATATGTCATCAGAGTTAGATAACCATTCTTTTAAA  600

seq1  ATCCAAGGTGTCCTTCACTAACTGTTCTCCATTTCTGATCTACTTAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGTGTCCTTCACTAACTGTTCTCCATTTCTGATCTACTTAAATT  650

seq1  GTTTTTGTTTTTGTTTTTGTTTTTTTACCAAGGTTAAAATAGTAAAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTGTTTTTGTTTTTTTACCAAGGTTAAAATAGTAAAGGTT  700

seq1  TTGGCATTTGAAAAGAGGACTGAGTAGAAAATTTAATGCTTAGCCTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTTGAAAAGAGGACTGAGTAGAAAATTTAATGCTTAGCCTGAAA  750

seq1  GGATCTTACACGCGTTCTCGCAACCGGCCAGGAAGAACGCAACAAACCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTACACGCGTTCTCGCAACCGGCCAGGAAGAACGCAACAAACCGG  800

seq1  AATCTTCTGCGGCAAAAGCTTTATTGCTTACATC-TTCAGGAGCCAGAGA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTTCAGGAGCCAGAGA  850

seq1  GCAAGAGAGCAAGAGAGCAAGAGCAAGAGCTCTATTGCTTACATC-TTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCAAGAGAGCAAGAGAGCAAGAGCAAGAGCTCTATTGCTTACATCTTTTA  900

seq1  GGAGCCAGAGCGCAAGAGTGCAAGAGTGCAAG-AGCAAAGGCAAGAGAGC  947
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAGCCAGAGCGCAAGAGTGCAAGAGTGCAAGTAGCAAAGGCAAGAGAGC  950

seq1  AAGAGAATGGCGAAACCCCATCCCTTTTAAGG-AGAATTAT--CCTCCGC  994
      ||||||||||||||||||||||| |||||||| ||||||||  | |||||
seq2  AAGAGAATGGCGAAACCCCATCCTTTTTAAGGAAGAATTATTCCTTCCGC  1000

seq1  CTAGG-ACGT-GTCACTCCCTGATTGGC-TGCAGCCCA-TCGGCCGAGTT  1040
      ||||| |||| ||||||||||||||||| |||||| || ||||| |||||
seq2  CTAGGAACGTGGTCACTCCCTGATTGGCTTGCAGCTCATTCGGCTGAGTT  1050

seq1  GTC-GTCA-TGGGGAAGGCAGAGCAC-ATGGGG--TGGA--GAACTACCC  1083
      ||| |||| ||||||||||||||||| ||||||  ||||   ||||||| 
seq2  GTCGGTCATTGGGGAAGGCAGAGCACTATGGGGGTTGGAAGAAACTACCT  1100

seq1  TT-GGCACAT-GCGC-AGATTATTTGTTTACCACTTAGAACACAGGATGT  1130
      || ||||||| |||| | ||||||||||||||||||||| ||||||||||
seq2  TTGGGCACATGGCGCGAAATTATTTGTTTACCACTTAGACCACAGGATGT  1150

seq1  CAGCGCCATCTTGC  1144
      ||   |||||||||
seq2  CACGCCCATCTTGC  1164


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