BAC Information

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BAC

Clone NameB6Ng01-246O02
Chromosome13 (Build37)
Map Location 54,711,862 - 54,830,580
singlet/doubletdoublet
Overlap geneCltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a
Downstream geneGprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246O02.bB6Ng01-246O02.g
ACCGA055372GA055373
length1,1201,091
definitionB6Ng01-246O02.b B6Ng01-246O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,829,451 - 54,830,580)(54,711,862 - 54,712,954)
sequence
gaattcctgtcctaaggacaccctcaactctctatggggacggccaggcc
tttcctagtgcaggagcctcttgtcaaagaggcagactgagctgggcgca
gtgacccatgcctttaatctcagtattgcagaagcagaggcaggtggatt
ccaggcaaagctggtttgcatagtgagttccaaaatagccaaggctacat
ggtcagaacctgtctcaaactacacacagaaaggaaggaaacttaatccc
agagaagcacggcagctccagcctcggggctcaccctacatggcctggcc
accttctagacacacacccacatccatcactgtaacaaatcgaaagcatt
gctataattgtgctcagaacgctatttaagtagaagaaagccttttaatt
tacaattggctgagggttcctgatcacactcaagaattctggcatcatca
ggaaaatgtagcctacaagtagtcatgaaatttttatgaatactaaattg
cacaattagcaggaggggaactcatcgattgggcaagtgctgcagcagct
ccaggctttgtgtgagcctgcgccacgctgagcccatcggacctagggtt
aaaacatctttagggcacttgaaaggtctgaagcctttagttttgtcccc
tggagttactgtgacagataaccgcaggagctgaggactcacctggacag
aagccacctgctggttgggcaacacaagctctgggatgatcactacaaat
gtgagcaggaagaggtcagtcagctgggacagtgcccacctggccataag
tgcagctgggacagtgcccacctgactaaaagtacagctgggagagtgcc
tacctggctataagtgcagctgggacagtacccacctggctaaaagtacg
acagggacagtactcagtactccctataatctgagtccactccacaagcc
catccccaatccctctgcaaagtgactgcatctcagctgtccccggggct
agagttggcaagcgcccatctcttattgtacagatggggaaatggagacc
aagagaagactgcttaaagccagtcatcagctaatacacagctggaaaga
gactcggtgttcttcatgct
gaattctttattgctacttcctagttgttttaatagtgtaccctttgaag
ccagttctaaaatgggttcagtaacgtgtatgaaattattatatgtaatt
aacattgtctcccgcactgctgcaggactgcaggtgatccccaaaggatg
agctgcgagttctctgagcgccccctgcttccctgcagaaaggaacgcta
acgctaacgtcaggaggacgtgtccgtcccacacctgtatcacttagcta
ggacactgggacagtctcagaactgagcagggggagggttccagagccag
ggtggagaagctggcctggggatgaaatgtcatgactaaattcctgtccc
cagagtcagcagatccagtctcagcgcagattccaactcatctcccggct
ccttcctcttttcccaggcctcacggatacacacagccccccgaggtacc
cttggtcaccctggatagccggactcagagtacagcagggacccaggccg
ggtctgaccgagactgggcctcccgcccccggtggtggcctcagcctccc
cggttccaggccgctgcgctgactcacccccgctcgcgagtcccggctgc
gcagaggccacctggctggcggcaggtgccccgaaacccgggtcattctc
gatgccagcaatctcgctttcctgctgggccaggaaggcggccgctgggt
cctcctcggcggcctccggggccccgctctccgacgatgagaagaagccg
aagtcctcagccatcttccccgcgtggctgctgtcacctcccgcccgcgc
ccgcggcccgcacttcccgtcacccgcccggcttgcctgtcactgcggct
gcagcggcggcgggaggagtcgcggcgggaatgcggtgacgtcagcggcc
gagggcggggcccgcggggctgggtggtcgccccggctctcggttcgagc
ccccgaagcccactttcggctccagagcgtgccagcagcactgggctggc
accggtgcattgaaccgaaagtttctctcaaagctgaattgtgagctgtc
gttgaatacagagtactcttctgcgtaggagagggacctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54829451_54830580
seq2: B6Ng01-246O02.b_46_1165 (reverse)

seq1  AGCATGAAGGGACACCGAGTTCTCTTTCCAGCTGTGTATTAGCTGATGGC  50
      |||||||| | |||||||| |||||||||||||||||||||||||||| |
seq2  AGCATGAA-GAACACCGAG-TCTCTTTCCAGCTGTGTATTAGCTGATGAC  48

seq1  TGGCTCTAAGGCAGGTCTTTCCTCTTTGGGTCTCCATTTCCCCATCTGTA  100
      ||||| ||| ||| |||||  |||||  ||||||||||||||||||||||
seq2  TGGCTTTAA-GCA-GTCTT--CTCTT--GGTCTCCATTTCCCCATCTGTA  92

seq1  CAATAAGAGATGGGCGCCTTGCCAACTCTAGCCCCGGGGACAGCTGAGAT  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAATAAGAGATGGGCG-CTTGCCAACTCTAGCCCCGGGGACAGCTGAGAT  141

seq1  GCAGTCACTTTTGCAGAGGGATTGGGGATGGGCTTGTGGAGTGGACTCAG  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAC-TTTGCAGAGGGATTGGGGATGGGCTTGTGGAGTGGACTCAG  190

seq1  ATTATAGGGAGTACTGAGTACTGTCCCTGTCGTACTTTTAGCCAGGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGGAGTACTGAGTACTGTCCCTGTCGTACTTTTAGCCAGGTGGG  240

seq1  TACTGTCCCAGCTGCACTTATAGCCAGGTAGGCACTCTCCCAGCTGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCCCAGCTGCACTTATAGCCAGGTAGGCACTCTCCCAGCTGTACT  290

seq1  TTTAGTCAGGTGGGCACTGTCCCAGCTGCACTTATGGCCAGGTGGGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCAGGTGGGCACTGTCCCAGCTGCACTTATGGCCAGGTGGGCACT  340

seq1  GTCCCAGCTGACTGACCTCTTCCTGCTCACATTTGTAGTGATCATCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCTGACTGACCTCTTCCTGCTCACATTTGTAGTGATCATCCCAG  390

seq1  AGCTTGTGTTGCCCAACCAGCAGGTGGCTTCTGTCCAGGTGAGTCCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGTTGCCCAACCAGCAGGTGGCTTCTGTCCAGGTGAGTCCTCAG  440

seq1  CTCCTGCGGTTATCTGTCACAGTAACTCCAGGGGACAAAACTAAAGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCGGTTATCTGTCACAGTAACTCCAGGGGACAAAACTAAAGGCTT  490

seq1  CAGACCTTTCAAGTGCCCTAAAGATGTTTTAACCCTAGGTCCGATGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTTCAAGTGCCCTAAAGATGTTTTAACCCTAGGTCCGATGGGCT  540

seq1  CAGCGTGGCGCAGGCTCACACAAAGCCTGGAGCTGCTGCAGCACTTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGGCGCAGGCTCACACAAAGCCTGGAGCTGCTGCAGCACTTGCCC  590

seq1  AATCGATGAGTTCCCCTCCTGCTAATTGTGCAATTTAGTATTCATAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGATGAGTTCCCCTCCTGCTAATTGTGCAATTTAGTATTCATAAAAA  640

seq1  TTTCATGACTACTTGTAGGCTACATTTTCCTGATGATGCCAGAATTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGACTACTTGTAGGCTACATTTTCCTGATGATGCCAGAATTCTTG  690

seq1  AGTGTGATCAGGAACCCTCAGCCAATTGTAAATTAAAAGGCTTTCTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATCAGGAACCCTCAGCCAATTGTAAATTAAAAGGCTTTCTTCTA  740

seq1  CTTAAATAGCGTTCTGAGCACAATTATAGCAATGCTTTCGATTTGTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAGCGTTCTGAGCACAATTATAGCAATGCTTTCGATTTGTTACA  790

seq1  GTGATGGATGTGGGTGTGTGTCTAGAAGGTGGCCAGGCCATGTAGGGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGATGTGGGTGTGTGTCTAGAAGGTGGCCAGGCCATGTAGGGTGA  840

seq1  GCCCCGAGGCTGGAGCTGCCGTGCTTCTCTGGGATTAAGTTTCCTTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGAGGCTGGAGCTGCCGTGCTTCTCTGGGATTAAGTTTCCTTCCTT  890

seq1  TCTGTGTGTAGTTTGAGACAGGTTCTGACCATGTAGCCTTGGCTATTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTAGTTTGAGACAGGTTCTGACCATGTAGCCTTGGCTATTTTG  940

seq1  GAACTCACTATGCAAACCAGCTTTGCCTGGAATCCACCTGCCTCTGCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTATGCAAACCAGCTTTGCCTGGAATCCACCTGCCTCTGCTTC  990

seq1  TGCAATACTGAGATTAAAGGCATGGGTCACTGCGCCCAGCTCAGTCTGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATACTGAGATTAAAGGCATGGGTCACTGCGCCCAGCTCAGTCTGCC  1040

seq1  TCTTTGACAAGAGGCTCCTGCACTAGGAAAGGCCTGGCCGTCCCCATAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACAAGAGGCTCCTGCACTAGGAAAGGCCTGGCCGTCCCCATAGA  1090

seq1  GAGTTGAGGGTGTCCTTAGGACAGGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  GAGTTGAGGGTGTCCTTAGGACAGGAATTC  1120

seq1: chr13_54711862_54712954
seq2: B6Ng01-246O02.g_66_1156

seq1  GAATTCTTTATTGCTACTTCCTAGTTGTTTTAATAGTGTACCCTTTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTGCTACTTCCTAGTTGTTTTAATAGTGTACCCTTTGAAG  50

seq1  CCAGTTCTAAAATGGGTTCAGTAACGTGTATGAAATTATTATATGTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTAAAATGGGTTCAGTAACGTGTATGAAATTATTATATGTAATT  100

seq1  AACATTGTCTCCCGCACTGCTGCAGGACTGCAGGTGATCCCCAAAGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTCTCCCGCACTGCTGCAGGACTGCAGGTGATCCCCAAAGGATG  150

seq1  AGCTGCGAGTTCTCTGAGCGCCCCCTGCTTCCCTGCAGAAAGGAACGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGAGTTCTCTGAGCGCCCCCTGCTTCCCTGCAGAAAGGAACGCTA  200

seq1  ACGCTAACGTCAGGAGGACGTGTCCGTCCCACACCTGTATCACTTAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTAACGTCAGGAGGACGTGTCCGTCCCACACCTGTATCACTTAGCTA  250

seq1  GGACACTGGGACAGTCTCAGAACTGAGCAGGGGGAGGGTTCCAGAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGGGACAGTCTCAGAACTGAGCAGGGGGAGGGTTCCAGAGCCAG  300

seq1  GGTGGAGAAGCTGGCCTGGGGATGAAATGTCATGACTAAATTCCTGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAAGCTGGCCTGGGGATGAAATGTCATGACTAAATTCCTGTCCC  350

seq1  CAGAGTCAGCAGATCCAGTCTCAGCGCAGATTCCAACTCATCTCCCGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAGCAGATCCAGTCTCAGCGCAGATTCCAACTCATCTCCCGGCT  400

seq1  CCTTCCTCTTTTCCCAGGCCTCACGGATACACACAGCCCCCCGAGGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTTTTCCCAGGCCTCACGGATACACACAGCCCCCCGAGGTACC  450

seq1  CTTGGTCACCCTGGATAGCCGGACTCAGAGTACAGCAGGGACCCAGGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCACCCTGGATAGCCGGACTCAGAGTACAGCAGGGACCCAGGCCG  500

seq1  GGTCTGACCGAGACTGGGCCTCCCGCCCCCGGTGGTGGCCTCAGCCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGACCGAGACTGGGCCTCCCGCCCCCGGTGGTGGCCTCAGCCTCCC  550

seq1  CGGTTCCAGGCCGCTGCGCTGACTCACCCCCGCTCGCGAGTCCCGGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCCAGGCCGCTGCGCTGACTCACCCCCGCTCGCGAGTCCCGGCTGC  600

seq1  GCAGAGGCCACCTGGCTGGCGGCAGGTGCCCCGAAACCCGGGTCATTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCCACCTGGCTGGCGGCAGGTGCCCCGAAACCCGGGTCATTCTC  650

seq1  GATGCCAGCAATCTCGCTTTCCTGCTGGGCCAGGAAGGCGGCCGCTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAGCAATCTCGCTTTCCTGCTGGGCCAGGAAGGCGGCCGCTGGGT  700

seq1  CCTCCTCGGCGGCCTCCGGGGCCCCGCTCTCCGACGATGAGAAGAAGCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCGGCGGCCTCCGGGGCCCCGCTCTCCGACGATGAGAAGAAGCCG  750

seq1  AAGTCCTCAGCCATCTTCCCCGCGTGGCTGCTGTCACCTCCCGCCCGCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTCAGCCATCTTCCCCGCGTGGCTGCTGTCACCTCCCGCCCGCGC  800

seq1  CCGCGGCCCGCACTTCCCGTCACCCGCCCGGCTTGCCTGTCACTGCGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGCCCGCACTTCCCGTCACCCGCCCGGCTTGCCTGTCACTGCGGCT  850

seq1  GCAGCGGCGGCGGGAGGAGTCGCGGCGGGAATGCGGTGACGTCAGCGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGGCGGCGGGAGGAGTCGCGGCGGGAATGCGGTGACGTCAGCGGCC  900

seq1  GAGGGCGGGGCCCGCGGGGCTGGGTGGTCGCCCC-GCCCTCGGTTCGAGC  949
      |||||||||||||||||||||||||||||||||| || ||||||||||||
seq2  GAGGGCGGGGCCCGCGGGGCTGGGTGGTCGCCCCGGCTCTCGGTTCGAGC  950

seq1  CCCCGAAGCCCACCTTCGGCTCCAGAGCGTGCCAGCAGCACTGGGCTGGC  999
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCCGAAGCCCACTTTCGGCTCCAGAGCGTGCCAGCAGCACTGGGCTGGC  1000

seq1  ACCGGGTGCATTGAACCGAAAAGTTTCTCCCAGAGCTGATTTTGTGAGCT  1049
      ||| |||||||||||||| |||||||||| || ||||||  |||||||||
seq2  ACC-GGTGCATTGAACCG-AAAGTTTCTCTCAAAGCTGA-ATTGTGAGCT  1047

seq1  G-CGT--GATACAAGAGTACTCTTCCTGCGTAGGAGGAGGGAGCTGA  1093
      | |||   |||| ||||||||||| |||||||||| |||||| ||||
seq2  GTCGTTGAATAC-AGAGTACTCTT-CTGCGTAGGA-GAGGGACCTGA  1091