BAC Information

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BAC

Clone NameB6Ng01-247E16
Chromosome13 (Build37)
Map Location 36,612,883 - 36,613,833
singlet/doubletsinglet
Overlap geneFars2
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, LOC100041590
Downstream geneLOC666758, Nrn1, F13a1, Ly86, LOC100042794, LOC100042800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247E16.bB6Ng01-247E16.g
ACCGA055663GA055664
length959780
definitionB6Ng01-247E16.b B6Ng01-247E16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttccacgttcccaccttgatgaatgaactgaacctctgaatctg
taagccagccccagttaaatgttgtccttataagacttgccttggtcatg
gtgtctgttcacagcagtaaaaccctaagaccccaccctaaaaaggatca
aggctaacatggagccaaaagcattggctatttggaagatcctgtcaaag
tggatgccgtaaagggttggcttcctggtgtagcatacactaggaaaaca
atatactcatgaagatcagagaggagggttcttggctatgtgtagattgt
gaggccacaagaaatgaggccaccctgaaaaatcaaacccccaaatgcat
ctcaggctgactcctgagccactatgtatgcaccccagatcctagggcta
aaacaggagcataaaattgcttctgggaagtctcaaccctaggatagcta
gggagagaaagtatagaagatatccaaggaggaagactaacatgagagat
cacccagcaaacagttcagtgaacacaacctcaaagcccaaagttataac
tgcacagtggaggcaaaggccagaggattgcaaatttcaggttagcttgg
ggcttcataataaggctctaccttaaaacacaaaaacaagtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtctatgtgtaaaacatttaaggaaaagg
ccatttacataaacatttgtagaaataagattgtagttgtgacttaagag
gagtagagggttaaataacaggttagacacagatcagtgaagtggagaac
acatctgtgggaactcagcttagaaagcagtggggagaaaaaacagaagg
gaaaacatgagaggacacagtgtaggcctgggatccctagcactcagggg
ctgagatagaatgatgcagcctaggcttatactgtgagcatgccctctca
aaaaaggaa

gaattctttgttcagctatgagccccagtttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttattgattcttggtcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatagaaatgggaacaaaacaccc
atggaaggagttacagagacaaaatttggagctgtgacgaaaggatggac
catctagtgattgccatatgcagggatccatcccataatcagcttccaaa
tgctgacaccattgcatacactagcaagatttcgctgaaaggacccagat
atagctctctcttgtgagactatgccggggcctagcaaacacagaagtgg
atgatcacagtcagctattggatgggtcacacggcccccaatggaggagc
tagggaaattacccaaggagctaaagggatctgcaaccctataggtggaa
caacaatatgaactaacccagtacccgggagctcttgtctctagctgcat
atgtatcaaaaagatggcctagtcggccatcactgcaaagagaggcccat
tggacttgcaaactttatgtgctccagtacaggggacccgccagggccaa
aaaggggggagtggggtgggtaggggattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36612883_36613833
seq2: B6Ng01-247E16.b_46_1004 (reverse)

seq1  TTCC-TTTTTGAGA-GGCATGCTCACAGTAT-AGCCTAGGCTGCATCATT  47
      |||| ||||||||| |||||||||||||||| ||||||||||||||||||
seq2  TTCCTTTTTTGAGAGGGCATGCTCACAGTATAAGCCTAGGCTGCATCATT  50

seq1  CTATCTCAGCCCCTGAGTGCTA-GGAT-CCAGGCCTACACTGTGTCCTCT  95
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  CTATCTCAGCCCCTGAGTGCTAGGGATCCCAGGCCTACACTGTGTCCTCT  100

seq1  CATGTTTTCCCTTCTG-TTTTTCTCCCCACTGCTTTCTAAGCTGAGTT-C  143
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  CATGTTTTCCCTTCTGTTTTTTCTCCCCACTGCTTTCTAAGCTGAGTTCC  150

seq1  CACAGATGTGTTCTCCACTTCACTGATCTGTGTCTAACCTGTTATTTAAC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGTGTTCTCCACTTCACTGATCTGTGTCTAACCTGTTATTTAAC  200

seq1  CCTCTACTCCTCTTAAGTCACAACTACAATCTTATTTCTACAAATGTTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTCCTCTTAAGTCACAACTACAATCTTATTTCTACAAATGTTTA  250

seq1  TGTAAATGGCCTTTTCCTT-AATGTTTTACACATAGACACACACACACAC  292
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTAAATGGCCTTTTCCTTAAATGTTTTACACATAGACACACACACACAC  300

seq1  ACACACACACACACACACACTTGTTTTTGTGTTTTAAGGTAGAGCCTTAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACTTGTTTTTGTGTTTTAAGGTAGAGCCTTAT  350

seq1  TATGAAGCCCCAAGCTAACCTGAAATTTGCAATCCTCTGGCCTTTGCCTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCCCCAAGCTAACCTGAAATTTGCAATCCTCTGGCCTTTGCCTC  400

seq1  CACTGTGCAGTTATAACTTTGGGCTTTGAGGTTGTGTTCACTGAACTGTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCAGTTATAACTTTGGGCTTTGAGGTTGTGTTCACTGAACTGTT  450

seq1  TGCTGGGTGATCTCTCATGTTAGTCTTCCTCCTTGGATATCTTCTATACT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTGATCTCTCATGTTAGTCTTCCTCCTTGGATATCTTCTATACT  500

seq1  TTCTCTCCCTAGCTATCCTAGGGTTGAGACTTCCCAGAAGCAATTTTATG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCTAGCTATCCTAGGGTTGAGACTTCCCAGAAGCAATTTTATG  550

seq1  CTCCTGTTTTAGCCCTAGGATCTGGGGTGCATACATAGTGGCTCAGGAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTTTAGCCCTAGGATCTGGGGTGCATACATAGTGGCTCAGGAGT  600

seq1  CAGCCTGAGATGCATTTGGGGGTTTGATTTTTCAGGGTGGCCTCATTTCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAGATGCATTTGGGGGTTTGATTTTTCAGGGTGGCCTCATTTCT  650

seq1  TGTGGCCTCACAATCTACACATAGCCAAGAACCCTCCTCTCTGATCTTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTCACAATCTACACATAGCCAAGAACCCTCCTCTCTGATCTTCA  700

seq1  TGAGTATATTGTTTTCCTAGTGTATGCTACACCAGGAAGCCAACCCTTTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATATTGTTTTCCTAGTGTATGCTACACCAGGAAGCCAACCCTTTA  750

seq1  CGGCATCCACTTTGACAGGATCTTCCAAATAGCCAATGCTTTTGGCTCCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATCCACTTTGACAGGATCTTCCAAATAGCCAATGCTTTTGGCTCCA  800

seq1  TGTTAGCCTTGATCCTTTTTAGGGTGGGGTCTTAGGGTTTTACTGCTGTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCTTGATCCTTTTTAGGGTGGGGTCTTAGGGTTTTACTGCTGTG  850

seq1  AACAGACACCATGACCAAGGCAAGTCTTATAAGGACAACATTTAACTGGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACACCATGACCAAGGCAAGTCTTATAAGGACAACATTTAACTGGG  900

seq1  GCTGGCTTACAGATTCAGAGGTTCAGTTCATTCATCAAGGTGGGAACGTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTACAGATTCAGAGGTTCAGTTCATTCATCAAGGTGGGAACGTG  950

seq1  GAAGAATTC  951
      |||||||||
seq2  GAAGAATTC  959


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