BAC Information

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BAC

Clone NameB6Ng01-247J18
Chromosome13 (Build37)
Map Location 50,448,722 - 50,449,815
singlet/doubletsinglet
Overlap genenone
Upstream geneBicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632
Downstream geneEG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247J18.bB6Ng01-247J18.g
ACCGA055899GA055900
length1,1771,097
definitionB6Ng01-247J18.b B6Ng01-247J18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggagttatttttct
gaagtccaccttcttgagttctttatatatgttgggtattagtcccctat
ctgacttaggataggtaaagatcctttcccaatctgttggtggtcttttt
gtcttattgacggtaacttttgccttgcagaagctttggagtttcttgag
gtcccatttgtcaattctcgatcttacagcacaagccattgctgttctat
tcaggaatttttcccttgtgcccatatcttcaaggcttttccccactttc
tcctctataagtttcagtgtctctggttttatgtgaagttccttgatcca
cttagatttgaccttagtacaaggagataggtatggatcgattcgcatcc
ttctacacgataacaaccagttgtgccagcaccaattgttgaaaatgctg
tctttcttccactggatggttttagctcccttgtcaaagatcatgtgact
ataggtgtgtggattcatttctgggtcttcaattctattccattggtcta
cttgtctgtcagtataccagtatcatgcagtttttatcacaattgctctg
tagtaaaggtttaggtcaggcatggtgattccaccagaggttcttttatc
cttgagaagaatttttgctatcctagggtttttgttattccagatgaatt
tgcaaattgctctttctaattcgttgaagaattgagttagaatgttgatg
gggattgcattgaatctgtagattgcttttgcctcatagccattttgagt
atattatttcctgccaatcaaagagaatgggagttttttctatcttttaa
gatcttcttcaattttttttcttcagagacttgaagttcttatcatacag
atctttcacttccttagttagagtcacactaaggtattttatattttttg
tgactattgtgacggaatgttgtttccctaatttcctttctcagcccgtt
tatcctgtgtgtagaggaaggccattgattgtttggattaatttatatca
gcttatgcactgagctgttatggttagagtcctctggtggacttttaagt
cacttatattacaatatccgatcatctgccaatgtgtaagtttggaactc
ctcggttcgcacgaatttcactaatcc
gaattcagcactgggtctacaacaacttagcttagtacatagactttttg
cacctccaacaacagcctccaaaggaagaaatttatagatagtgctagta
tcagtgctttatgttgttcactgtaacttgttccattttctgtggattca
ccaaagtgagtgttcctcagttgacctccccacaaccttgttcaaccaca
cattggacaccagttatatctgtccagcagccacagagaactgagtacac
ctgaaagggaggatgggaatgtaaaaggacaggcaagtgagagaagaatg
aagccaagacagagatgtctgatgagggctcaaagtttaattttcagctt
tgtgtttatataggcaaaccccaaagacacatccttttgtttcagctgga
ttgagttgcaaagcaagctcaacaggtagtcaactcctcaaagctcaaaa
ctcaaagttggaagttgcaaatgcagcaaggccaagggcagcctccagcc
aggttgtaaaaccactggaggtttgtttagcctattcaaggctggggaag
ggcacattccccctgggtcttttaaatatcagatctgtatctagcctcct
agagcaaactcatcacactcccagatttcctggtctaaaagtgtggcagt
gtattccaaaccagcattcagtgctggctatggcaggtgcaccagagatc
tgcctgccagggaccaggaggctctgctcttacttatacaacaacataca
ggtggtattgcttccaggttcatctctcctgatgcaacccagggttctac
acaatctgcaaagcatttgaactcccccccaccctttaattaaacagaaa
gagggacaaaaccaggtctcctagtaatcttccttcttcaatgtacacac
atttgaggcctactctctgccctgagagtaggtggtctaagacagatggt
ctgaagatcccacactcaaaagccctggcttaagagcaaggcctgtagag
tgtctcctcctcaagaattccatagacaagagatgcctaggacgattaca
atatattttatattgctaggcttcttacctccgaagggacaatgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_50448722_50449815
seq2: B6Ng01-247J18.g_67_1163

seq1  GAATTCAGCACTGGGTCTACAACAACTTAGCTTAGTACATAGACTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACTGGGTCTACAACAACTTAGCTTAGTACATAGACTTTTTG  50

seq1  CACCTCCAACAACAGCCTCCAAAGGAAGAAATTTATAGATAGTGCTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAACAACAGCCTCCAAAGGAAGAAATTTATAGATAGTGCTAGTA  100

seq1  TCAGTGCTTTATGTTGTTCACTGTAACTTGTTCCATTTTCTGTGGATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTTTATGTTGTTCACTGTAACTTGTTCCATTTTCTGTGGATTCA  150

seq1  CCAAAGTGAGTGTTCCTCAGTTGACCTCCCCACAACCTTGTTCAACCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGAGTGTTCCTCAGTTGACCTCCCCACAACCTTGTTCAACCACA  200

seq1  CATTGGACACCAGTTATATCTGTCCAGCAGCCACAGAGAACTGAGTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACACCAGTTATATCTGTCCAGCAGCCACAGAGAACTGAGTACAC  250

seq1  CTGAAAGGGAGGATGGGAATGTAAAAGGACAGGCAAGTGAGAGAAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGGAGGATGGGAATGTAAAAGGACAGGCAAGTGAGAGAAGAATG  300

seq1  AAGCCAAGACAGAGATGTCTGATGAGGGCTCAAAGTTTAATTTTCAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGACAGAGATGTCTGATGAGGGCTCAAAGTTTAATTTTCAGCTT  350

seq1  TGTGTTTATATAGGCAAACCCCAAAGACACATCCTTTTGTTTCAGCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATATAGGCAAACCCCAAAGACACATCCTTTTGTTTCAGCTGGA  400

seq1  TTGAGTTGCAAAGCAAGCTCAACAGGTAGTCAACTCCTCAAAGCTCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGCAAAGCAAGCTCAACAGGTAGTCAACTCCTCAAAGCTCAAAA  450

seq1  CTCAAAGTTGGAAGTTGCAAATGCAGCAAGGCCAAGGGCAGCCTCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTTGGAAGTTGCAAATGCAGCAAGGCCAAGGGCAGCCTCCAGCC  500

seq1  AGGTTGTAAAACCACTGGAGGTTTGTTTAGCCTATTCAAGGCTGGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTAAAACCACTGGAGGTTTGTTTAGCCTATTCAAGGCTGGGGAAG  550

seq1  GGCACATTCCCCCTGGGTCTTTTAAATATCAGATCTGTATCTAGCCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTCCCCCTGGGTCTTTTAAATATCAGATCTGTATCTAGCCTCCT  600

seq1  AGAGCAAACTCATCACACTCCCAGATTTCCTGGTCTAAAAGTGTGGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAACTCATCACACTCCCAGATTTCCTGGTCTAAAAGTGTGGCAGT  650

seq1  GTATTCCAAACCAGCATTCAGTGCTGGCTATGGCAGGTGCACCAGAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCAAACCAGCATTCAGTGCTGGCTATGGCAGGTGCACCAGAGATC  700

seq1  TGCCTGCCAGGGACCAGGAGGCTCTGCTCTTACTTATACAACAACATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCAGGGACCAGGAGGCTCTGCTCTTACTTATACAACAACATACA  750

seq1  GGTGGTATTGCTTCCAGGTTCATCTCTCCTGATGCAACCCAGGGTTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTATTGCTTCCAGGTTCATCTCTCCTGATGCAACCCAGGGTTCTAC  800

seq1  ACAATCTGCAAAGCATTTGAACTCCCCCCCACCCTTTAATTAAACAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTGCAAAGCATTTGAACTCCCCCCCACCCTTTAATTAAACAGAAA  850

seq1  GAGGGACAAAACCAGGTCTCCTAGTAATCTTCCTTCTTCAATGTACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAAAACCAGGTCTCCTAGTAATCTTCCTTCTTCAATGTACACAC  900

seq1  ATTTGAGGCCTACTCTCTGCCCTGAGAGTAGGTGGTCTAAGACAGATGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGCCTACTCTCTGCCCTGAGAGTAGGTGGTCTAAGACAGATGGT  950

seq1  CTGAAGATCCCACACTCAAAGGCCCTGGC-TAAGAGCCAGGCCTGTTAGA  999
      |||||||||||||||||||| |||||||| ||||||| ||||||| ||||
seq2  CTGAAGATCCCACACTCAAAAGCCCTGGCTTAAGAGCAAGGCCTG-TAGA  999

seq1  GTGTCTCC-CCTC-AGAA-TCCATAGACAAAGAGATGCCTAGGAAGGAAT  1046
      |||||||| |||| |||| ||||||||| ||||||||||||||| |  ||
seq2  GTGTCTCCTCCTCAAGAATTCCATAGAC-AAGAGATGCCTAGGACG--AT  1046

seq1  TAC-ATATA-TTTATATTGCTAGGC-TCCTACCCCCG-AGGGACAAATGT  1092
      ||| ||||| ||||||||||||||| || |||| ||| |||||| |||||
seq2  TACAATATATTTTATATTGCTAGGCTTCTTACCTCCGAAGGGAC-AATGT  1095

seq1  AC  1094
      ||
seq2  AC  1097