BAC Information

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BAC

Clone NameB6Ng01-247J19
Chromosome13 (Build37)
Map Location 89,833,506 - 89,834,669
singlet/doubletsinglet
Overlap geneVcan
Upstream geneEdil3, Hapln1, EG667266
Downstream geneLOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247J19.bB6Ng01-247J19.g
ACCGA055901GA055902
length1,1511,198
definitionB6Ng01-247J19.b B6Ng01-247J19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatcaataagaaaagacataaaattcctcctggcctctattatc
tgccttaagggtcaattcttagaaaagtagtttgtttctgtcccaattta
tgatgtaatggccacatgtattcactgaatcaataacgaaggaatctctc
gacatcaaaaaatgactccctagaccaaatatatccagtggtggaggggg
ctgggaaagatcttcttgaaaagaccagaggaagcctttttctcctttat
gtcattgtcttttatgatctgtgccaggaccaggctgagctttatttctt
gctattgacattttaatgaatgacaatcctgatgttgtatgtaagtattc
taattacaaatgtcaagtaatacatataaacccatcctctgggttgtaat
gccaaatggcagcaaacactatgccccgtttacttctctgttgccagaaa
tacaccagcaaaactttcagtctagtgttctagaaaaagaaaacttgagg
cttcacccattccagaatgcattcggctatccttgatggagtccagctac
actacttccactgtcaccacagtgcttttggaaataccaggtcatggact
agacacaggctacattgggcctcacaacttgcccagaggaatgctattgt
agaataagctttctgtttagccctaactgacacacaagtttaggatgagt
ctgataaacacacagaagaaactagcatgacaaagacaactctgcctcca
ttaccccatctccaaaaatgttttctgctagattgttcctcttataagct
gcttctttcctcattggaaggcatcaacattcaacatccaataagaacag
agaaaattagtagttgaggacggtttgtatgatcttgctttttcccagtc
cactgtacattaatgtaatatttactgaactactctgtggatgtgtgttg
actttttatgttgaaagccaacaaacatgacttcaggagacacatacggt
aatcatctctctttcaccctatactagaaaaaaaaaaaaaacttactttt
cttatatgccagaatacccactgaatcatttactaaaaaatatggggtgt
ctatttttcaacctaacctataacctttctgttaaccttcaactagacac
a

gaattctataagcttcttttatgttcatgggcacatctttctttaggtta
tggaagttttcttctataattttgttgaagatactgggcctttaaggtgg
gaatcttcactctcttctatacctattatcctcagattttggcttctcat
tgcatcctggatttcctggatgtttagtttttggagcttttttcattttg
catttttctttgactattgtgtccatgttttctatggtatcttctgtacc
tgagatcctctcttctatctcttctattctgttggtgatgcttgcatcta
tgattcctgatctctttcctgggtgttctatctccaaggtctcgggtttg
tgatttatttattgtttctatttctggtttttttttccatcctgaatggt
ttcattaaattccttcacctgattacctgtattctcctgtatttctttaa
gagagttatttatgcccttcttaaagacctctacctctatcatcattatt
agaagtgattttagatatgaatcttgcttttcgggatgtgatggtgtatc
cagacttgctatggtgggaaaactgtgttctgatgatgccaagtaaactt
ggcgtctgttgcttctgttcttatgcttgcctcttgacatctggttatct
gtagtgctgcctgccctcactgtgtctgactggggcctgtccctcctgta
atcctggttgtttcagaactcctcatagtccagttgtccatgtgatccta
aattctggaatcctgggatcctgagatcctgggtgtgtcagaactccttg
gagtcaaactgtatctgggaaccttgagatcttaatgtatccaagctcct
taaattatttttgcatttaatttgttttatttaattaatatttaataata
ggacatttataaaatttgattaaaatatatatgcttgtagctgttgttca
gtttttttacttggaaatatgattagccacttttcttgccacttatttat
ctccttaagtgctaccaaacccataccgaggtaaatatagagagatatgc
tacccctcttcagtttctggaggcatacacaataggctcttgttgcagtg
gaaaaggatgggatgcccgtgttcacatacaaaatctctatctaagatag
tgctagttagaaatgtttctcggtggtatgagggaattactctgttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89833506_89834669
seq2: B6Ng01-247J19.b_45_1195

seq1  GAATTCTATCAATAAGAAAAGACATAAAATTCCTCCTGGCCTCTATTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCAATAAGAAAAGACATAAAATTCCTCCTGGCCTCTATTATC  50

seq1  TGCCTTAAGGGTCAATTCTTAGAAAAGTAGTTTGTTTCTGTCCCAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAAGGGTCAATTCTTAGAAAAGTAGTTTGTTTCTGTCCCAATTTA  100

seq1  TGATGTAATGGCCACATGTATTCACTGAATCAATAACGAAGGAATCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAATGGCCACATGTATTCACTGAATCAATAACGAAGGAATCTCTC  150

seq1  GACATCAAAAAATGACTCCCTAGACCAAATATATCCAGTGGTGGAGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAAAAAATGACTCCCTAGACCAAATATATCCAGTGGTGGAGGGGG  200

seq1  CTGGGAAAGATCTTCTTGAAAAGACCAGAGGAAGCCTTTTTCTCCTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGATCTTCTTGAAAAGACCAGAGGAAGCCTTTTTCTCCTTTAT  250

seq1  GTCATTGTCTTTTATGATCTGTGCCAGGACCAGGCTGAGCTTTATTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTCTTTTATGATCTGTGCCAGGACCAGGCTGAGCTTTATTTCTT  300

seq1  GCTATTGACATTTTAATGAATGACAATCCTGATGTTGTATGTAAGTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGACATTTTAATGAATGACAATCCTGATGTTGTATGTAAGTATTC  350

seq1  TAATTACAAATGTCAAGTAATACATATAAACCCATCCTCTGGGTTGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACAAATGTCAAGTAATACATATAAACCCATCCTCTGGGTTGTAAT  400

seq1  GCCAAATGGCAGCAAACACTATGCCCCGTTTACTTCTCTGTTGCCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGGCAGCAAACACTATGCCCCGTTTACTTCTCTGTTGCCAGAAA  450

seq1  TACACCAGCAAAACTTTCAGTCTAGTGTTCTAGAAAAAGAAAACTTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGCAAAACTTTCAGTCTAGTGTTCTAGAAAAAGAAAACTTGAGG  500

seq1  CTTCACCCATTCCAGAATGCATTCGGCTATCCTTGATGGAGTCCAGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCATTCCAGAATGCATTCGGCTATCCTTGATGGAGTCCAGCTAC  550

seq1  ACTACTTCCACTGTCACCACAGTGCTTTTGGAAATACCAGGTCATGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCCACTGTCACCACAGTGCTTTTGGAAATACCAGGTCATGGACT  600

seq1  AGACACAGGCTACATTGGGCCTCACAACTTGCCCAGAGGAATGCTATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGGCTACATTGGGCCTCACAACTTGCCCAGAGGAATGCTATTGT  650

seq1  AGAATAAGCTTTCTGTTTAGCCCTAACTGACACACAAGTTTAGGATGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGCTTTCTGTTTAGCCCTAACTGACACACAAGTTTAGGATGAGT  700

seq1  CTGATAAACACACAGAAGAAACTAGCATGACAAAGACAACTCTGCCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAACACACAGAAGAAACTAGCATGACAAAGACAACTCTGCCTCCA  750

seq1  TTACCCCATCTCCAAAAATGTTTTCTGCTAGATTGTTCCTCTTATAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCATCTCCAAAAATGTTTTCTGCTAGATTGTTCCTCTTATAAGCT  800

seq1  GCTTCTTTCCTCATTGGAAGGCATCAACATTCAACATCCAATAAGAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTCCTCATTGGAAGGCATCAACATTCAACATCCAATAAGAACAG  850

seq1  AGAAAATTAGTAGTTGAGGACGGTTTGTATGATCTTGCTTTTTCCCAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTAGTAGTTGAGGACGGTTTGTATGATCTTGCTTTTTCCCAGTC  900

seq1  CACTGTACATTAATGTAATATTTACTGAACTACTCTGTGGATGTGTGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTACATTAATGTAATATTTACTGAACTACTCTGTGGATGTGTGTTG  950

seq1  ACTTTTTATGTTGAAAGCCAACAAACATGACTTCAGGAGACACATACGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTATGTTGAAAGCCAACAAACATGACTTCAGGAGACACATACGGT  1000

seq1  AATTCCACCTTCTCTTTCACCCTAATAACTAAAAAAAAAAAAAAAAAAAA  1050
      |||  || | ||||||||||||||   |||        | ||||||||||
seq2  AAT--CATC-TCTCTTTCACCCTA--TACT--------AGAAAAAAAAAA  1037

seq1  AAAACATACTGT--CTATATGCCAGGATATACCCACTGAATCATTTTACT  1098
      ||||| |||| |   ||||||||||   ||||||||||||||| ||||||
seq2  AAAACTTACTTTTCTTATATGCCAG--AATACCCACTGAATCA-TTTACT  1084

seq1  --AAAATATTGGGTGTCTATTTTTTCAACCTAA-CTATAA-CTTTCTATT  1144
        ||||||| ||||||||| ||||||||||||| |||||| ||||||  |
seq2  AAAAAATATGGGGTGTCTA-TTTTTCAACCTAACCTATAACCTTTCT-GT  1132

seq1  TAACCTTCACACTAGACACA  1164
      ||||||||| ||||||||||
seq2  TAACCTTCA-ACTAGACACA  1151


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