BAC Information

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BAC

Clone NameB6Ng01-247L01
Chromosome13 (Build37)
Map Location 6,596,964 - 6,598,142
singlet/doubletsinglet
Overlap genePfkp
Upstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1
Downstream geneLOC100039532, LOC667611, EG623516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247L01.bB6Ng01-247L01.g
ACCGA055959GA055960
length1,1951,163
definitionB6Ng01-247L01.b B6Ng01-247L01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagaagtttggcagcttgtgggtgtactctcacctcttgttct
gtctgtctgtctgtcttcagcaccctacctggaaagtacttggagaagat
cgcagagcagatgcattcccatagtatcaatgcccttctgatcattggag
gatttgaggtacgttattgtgtgtctgtctccctgcttgttcgttctgga
ggtgtgattggtagccctatgtttgcatcacatataccccattttaatgt
ctactcctcaggaagtggggttttaatacacaaacccattgtcctgaaac
acagaatagcagggtagcaagatgtagcacaagactagctcaattctgat
aaattaaaccagtaaattgtctattctgctgaaactccttttgatgtttt
ctcatttgttatcaatctgtagatataatccaatatttgccatttgagat
atactgctgattttgaaaggaaggaggttatatggttaatgtttctcttc
ggactttttttttttaaacgtcatatattatattggatttatgtagtcct
taattacatcctactcgatggggacgaaagtcatagaaatcgtagagaat
ttaccaaaagaaagataagaacttcacaaaaccagattcaaaattaagag
agagttaatcgtagtcctgtatgctaataccacttctccccttgactccc
agaaagctgcttgtccttgtctctgctcgtaacaattctgtgttggttct
tctagtggtacctgctctcctcaccgtgtaccccgtgcactgtgtactcc
ccgtgcttgctcgctcctggccacacgctgttcacgtccctctctccctc
ccctagccttgcaatcacacagacttatctgacaggcctacctaggactc
ctagagctggcagctgcccgggagaacatgaggcgttctggtgtccccat
gggttatggttcctgctactgtcttccaacaatggtgcccgggttccgat
tttcagcatcggggcagacacagctctgacacttatcacagacgtaagtg
tggggtggtggccagcaaaggcagggtgccactgaacgctaccccggagg
gccggggatcttttatcttacaggtgtactagaaataggcctttacaatt
ggatactaaatatttttatttcaaggaaggattcacattttaaaa

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaggcttgtacaaccactctggaaatctgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgttccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaggaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccttccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
agagaaagtacccaaggagctaaagggatctgcaaccctataggtggatc
aacattatgaactaaccagtaccccggaagctctgactctagtgcaatat
tatatcaaggatgcttagtcggcatcactgaaaggaagtcattgaactgc
caacctttaatgcctagaacatgctacgctatgtccaaatgagattgggg
cggttatagatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6596964_6598142
seq2: B6Ng01-247L01.b_43_1237 (reverse)

seq1  TTTTAAAATG----TACTTTCTTGAAATAAAAATATTTAGGTATCCAATT  46
      ||||||||||    | ||| ||||||||||||||||||| ||||||||||
seq2  TTTTAAAATGTGAATCCTTCCTTGAAATAAAAATATTTA-GTATCCAATT  49

seq1  GGTAAAAGGCTATTTCTAGTACA-CTGGTAGATAAAAGGATCCCGGCC--  93
       ||||| | |||||||||||||| |||  |||||||||   |||||||  
seq2  -GTAAAGGCCTATTTCTAGTACACCTGTAAGATAAAAGATCCCCGGCCCT  98

seq1  TCGGGTTAGCG-TCAGTGGCA-CCTG-CTTTGCTGG-CAC--ACCCACAC  137
       |||| ||||| ||||||||| |||| ||||||||| |||   |||||||
seq2  CCGGGGTAGCGTTCAGTGGCACCCTGCCTTTGCTGGCCACCACCCCACAC  148

seq1  TTACGTCTGTGAT-AGTGTTCAGAGCTGTGTCTGCCCCGATGCTG-AAAT  185
      ||||||||||||| |||| |||||||||||||||||||||||||| ||||
seq2  TTACGTCTGTGATAAGTG-TCAGAGCTGTGTCTGCCCCGATGCTGAAAAT  197

seq1  CGGAACCC-GGCA-CATTGTTGG-AGACAGTAGCAGGAACCATAA-CCAT  231
      |||||||| |||| ||||||||| ||||||||||||||||||||| ||||
seq2  CGGAACCCGGGCACCATTGTTGGAAGACAGTAGCAGGAACCATAACCCAT  247

seq1  GGGGACA-CAGAACGCCTCATGTTTCTCCCGGGCAGCTGCCAGCTCTAGG  280
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  GGGGACACCAGAACGCCTCATG-TTCTCCCGGGCAGCTGCCAGCTCTAGG  296

seq1  AGTCCTAGGTAGGCCTGTCAGATAAGTCTGTGTGATTGCAAGGCTAGGGG  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAGGTAGGCCTGTCAGATAAGTCTGTGTGATTGCAAGGCTAGGGG  346

seq1  AGGGAGAGAGGGACGTGAACAGCGTGTGGCCAGGAGCGAGCAAGCACGGG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAGGGACGTGAACAGCGTGTGGCCAGGAGCGAGCAAGCACGGG  396

seq1  GAGTACACAGTGCACGGGGTACACGGTGAGGAGAGCAGGTACCACTAGAA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACAGTGCACGGGGTACACGGTGAGGAGAGCAGGTACCACTAGAA  446

seq1  GAACCAACACAGAATTGTTACGAGCAGAGACAAGGACAAGCAGCTTTCTG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAACACAGAATTGTTACGAGCAGAGACAAGGACAAGCAGCTTTCTG  496

seq1  GGAGTCAAGGGGAGAAGTGGTATTAGCATACAGGACTACGATTAACTCTC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAGGGGAGAAGTGGTATTAGCATACAGGACTACGATTAACTCTC  546

seq1  TCTTAATTTTGAATCTGGTTTTGTGAAGTTCTTATCTTTCTTTTGGTAAA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTTGAATCTGGTTTTGTGAAGTTCTTATCTTTCTTTTGGTAAA  596

seq1  TTCTCTACGATTTCTATGACTTTCGTCCCCATCGAGTAGGATGTAATTAA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACGATTTCTATGACTTTCGTCCCCATCGAGTAGGATGTAATTAA  646

seq1  GGACTACATAAATCCAATATAATATATGACGTTTAAAAAAAAAAAGTCCG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACATAAATCCAATATAATATATGACGTTTAAAAAAAAAAAGTCCG  696

seq1  AAGAGAAACATTAACCATATAACCTCCTTCCTTTCAAAATCAGCAGTATA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACATTAACCATATAACCTCCTTCCTTTCAAAATCAGCAGTATA  746

seq1  TCTCAAATGGCAAATATTGGATTATATCTACAGATTGATAACAAATGAGA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATGGCAAATATTGGATTATATCTACAGATTGATAACAAATGAGA  796

seq1  AAACATCAAAAGGAGTTTCAGCAGAATAGACAATTTACTGGTTTAATTTA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCAAAAGGAGTTTCAGCAGAATAGACAATTTACTGGTTTAATTTA  846

seq1  TCAGAATTGAGCTAGTCTTGTGCTACATCTTGCTACCCTGCTATTCTGTG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTGAGCTAGTCTTGTGCTACATCTTGCTACCCTGCTATTCTGTG  896

seq1  TTTCAGGACAATGGGTTTGTGTATTAAAACCCCACTTCCTGAGGAGTAGA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGACAATGGGTTTGTGTATTAAAACCCCACTTCCTGAGGAGTAGA  946

seq1  CATTAAAATGGGGTATATGTGATGCAAACATAGGGCTACCAATCACACCT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAATGGGGTATATGTGATGCAAACATAGGGCTACCAATCACACCT  996

seq1  CCAGAACGAACAAGCAGGGAGACAGACACACAATAACGTACCTCAAATCC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACGAACAAGCAGGGAGACAGACACACAATAACGTACCTCAAATCC  1046

seq1  TCCAATGATCAGAAGGGCATTGATACTATGGGAATGCATCTGCTCTGCGA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGATCAGAAGGGCATTGATACTATGGGAATGCATCTGCTCTGCGA  1096

seq1  TCTTCTCCAAGTACTTTCCAGGTAGGGTGCTGAAGACAGACAGACAGACA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCAAGTACTTTCCAGGTAGGGTGCTGAAGACAGACAGACAGACA  1146

seq1  GAACAAGAGGTGAGAGTACACCCACAAGCTGCCAAACTTCTTGGAATTC  1179
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAGGTGAGAGTACACCCACAAGCTGCCAAACTTCTTGGAATTC  1195


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