BAC Information

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BAC

Clone NameB6Ng01-248C21
Chromosome13 (Build37)
Map Location 23,981,519 - 24,131,844
singlet/doubletdoublet
Overlap geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
Upstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248C21.bB6Ng01-248C21.g
ACCGA056322GA056323
length1,0511,109
definitionB6Ng01-248C21.b B6Ng01-248C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,130,782 - 24,131,844)(23,981,519 - 23,982,636)
sequence
gaattccctcttgatgcatcgctgccgcttcagagttctgctcacaattg
atacccaggacttggtttgttttttttttccccctattgcttcaaagtct
tttattattctatattttgttgtttgctttgtttttattattgtttgcct
tgctattttattttttgagacagttttacactgtatcccatgctagtctg
gaattcactaagcagcccaggaaaaatgtacactctcagtcaccctctgc
ctcaggttcccgcatgctggggttccaggggtacactgccactttcagga
atgtcagaattttagtacaggctaccatagttcttggcctacagtcactg
ctgatagacacatcaaaatggctgtcgtgacactgtgtgattacagatgc
cattgctaagctgttcaacttagaactgtattactgggaaatgggtgagc
catggatgtggaccaagtgttctgtcccatctgccccaccatgacttcct
ctcctgaccagcaattttgttctctgcttgtctttgaaagatatctgggt
gatatgtaatatgtaacatctgttttcttcaaagatgttagtctagaatt
ctgatcatgtttctgagagcaaggaccccatggctcacctttcatcaact
ctcaaggggacccacaaaaagttgtgtttttttaaattacattctgttat
aaaaataagctgtcagacattaggtagaacatcataattggtgtaaagaa
agcttgaagtctgtgttacttgttcataattttaaatgtcaagtaaatta
caaggcttgaactaaaaaaaaaaaaaaaaaaaccaccttttctttctcca
cttcttgttccctataagcaacttgtttattccgtttaactgttttactt
ggctcccactttccctaaagaatacttctcatccctaggtttcagttttc
agtcgtaattctgtcaacatctgactacagaaggatgggtagtgcatcct
ctctgaccctgctgaattccctctctctctctcttctcatctgcctctcc
t
gaattcctttggttgttcccacacacacagtatgggccagggtaaggtgg
tcagcacacatcgtggccacattgctcatagaggagcctccaaaatcctg
cttctcgaaatatatgatgtcagagaggcagaagacaccggcagaactac
agaaattccttggtaggggccatgacctcactagagaagggaaattcaag
gcaaaagggggtcagatctcttgctgagcatagagccagtcacacccgtt
cttcctgcaagtccattcaattcttgattattgtcagctgagcaaacttt
tctgctaacttctcaaatgtgaggaaataaaatttcagaagtttgcaaag
ttgtctctgcccaggaagaaatcctgcccttgcgtaagtgtgagagaaga
gaaaaaatgaataaaatgtcccctttgcacatgaaacaatgagccaacaa
gagtttgacatccatactcaaatcctgttcctccccaaattttttaaaac
attttttttaatcttatgtgtatgggtgtgcctgcgtacgatatatatgc
ctgagggccacagagtctgaaacagaaggtaatatcttcttgaactggag
tcacagcccattgtgagacaccaagtgggtgttagaaatagcgaacctca
gtccgttggaaaagcctctagtgctcttaccctctaactcatctttccag
ccccatcaaaccctatttcttctaaatgtctcatgcagagaattgttcta
caagacctgagctttctagttggagcaaactcagtttttctagagaaaca
tcctgaactcatgctccatggggtttcaggacacatggcacaaaactggg
ggaaaaaatcacaaaccacttgaagaagtgtgaaacaaaccacacaccac
acacacaccccccccccccagaatgagagcgtcaaagatatcagaagtga
tgcagcatttaagaggtgaaagtagaagacaaagggatgtcagaggcatg
accaggtgttcaaaatggtcttatctaccccttgtggtcacaatataacc
aataaaaatagaaatatcgagacttaatgtaaccaaatggagcctataag
gcctctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24130782_24131844
seq2: B6Ng01-248C21.b_48_1098 (reverse)

seq1  AGGAGAGGGAGGAAGGGAAAGAGGAGAAGGAGAGGAAGAGAGAGGGAATT  50
      ||||||||           ||| ||||| |||||  ||||||||||||||
seq2  AGGAGAGG----------CAGATGAGAA-GAGAG--AGAGAGAGGGAATT  37

seq1  CAGCAGGGTCAGAGAGGATGCACTA-CCATCC-TCTGTAGTCAGATGTTG  98
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  CAGCAGGGTCAGAGAGGATGCACTACCCATCCTTCTGTAGTCAGATGTTG  87

seq1  ACAGAATTACGACTGAAAACTGAAAACTAGGGATGAGAAGTATTC-TTAG  147
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  ACAGAATTACGACTGAAAACTGAAACCTAGGGATGAGAAGTATTCTTTAG  137

seq1  GGAAAGTGGGAGCCAAGT-AAACAGTT-AACGGAATAAACAAGTTGCTTA  195
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  GGAAAGTGGGAGCCAAGTAAAACAGTTAAACGGAATAAACAAGTTGCTTA  187

seq1  TAGGGAACAAGAAGTGGAGAAAG-AAAGGTGGTTTTTTTTTTTTTTTTTT  244
      ||||||||||||||||||||||| ||||||||    ||||||||||||||
seq2  TAGGGAACAAGAAGTGGAGAAAGAAAAGGTGG----TTTTTTTTTTTTTT  233

seq1  TTTTTAGTTCAAGCCTTGTAATTTACTTGACATTTAAAATTATGAACAAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTTCAAGCCTTGTAATTTACTTGACATTTAAAATTATGAACAAG  283

seq1  TAACACAGACTTCAAGCTTTCTTTACACCAATTTATGATGTTCTACCTAA  344
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAACACAGACTTCAAGCTTTCTTTACACCAA-TTATGATGTTCTACCTAA  332

seq1  TGTCTGACAGCTTATTTTTATAACAGAATGTAATTTAAAAAAACACAACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACAGCTTATTTTTATAACAGAATGTAATTTAAAAAAACACAACT  382

seq1  TTTTGTGGGTCCCCTTGAGAGTTGATGAAAGGTGAGCCATGGGGTCCTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGGTCCCCTTGAGAGTTGATGAAAGGTGAGCCATGGGGTCCTTG  432

seq1  CTCTCAGAAACATGATCAGAATTCTAGACTAACATCTTTGAAGAAAACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAAACATGATCAGAATTCTAGACTAACATCTTTGAAGAAAACAG  482

seq1  ATGTTACATATTACATATCACCCAGATATCTTTCAAAGACAAGCAGAGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACATATTACATATCACCCAGATATCTTTCAAAGACAAGCAGAGAA  532

seq1  CAAAATTGCTGGTCAGGAGAGGAAGTCATGGTGGGGCAGATGGGACAGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGCTGGTCAGGAGAGGAAGTCATGGTGGGGCAGATGGGACAGAA  582

seq1  CACTTGGTCCACATCCATGGCTCACCCATTTCCCAGTAATACAGTTCTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTCCACATCCATGGCTCACCCATTTCCCAGTAATACAGTTCTAA  632

seq1  GTTGAACAGCTTAGCAATGGCATCTGTAATCACACAGTGTCACGACAGCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACAGCTTAGCAATGGCATCTGTAATCACACAGTGTCACGACAGCC  682

seq1  ATTTTGATGTGTCTATCAGCAGTGACTGTAGGCCAAGAACTATGGTAGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATGTGTCTATCAGCAGTGACTGTAGGCCAAGAACTATGGTAGCC  732

seq1  TGTACTAAAATTCTGACATTCCTGAAAGTGGCAGTGTACCCCTGGAACCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAAAATTCTGACATTCCTGAAAGTGGCAGTGTACCCCTGGAACCC  782

seq1  CAGCATGCGGGAACCTGAGGCAGAGGGTGACTGAGAGTGTACATTTTTCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCGGGAACCTGAGGCAGAGGGTGACTGAGAGTGTACATTTTTCC  832

seq1  TGGGCTGCTTAGTGAATTCCAGACTAGCATGGGATACAGTGTAAAACTGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCTTAGTGAATTCCAGACTAGCATGGGATACAGTGTAAAACTGT  882

seq1  CTCAAAAAATAAAATAGCAAGGCAAACAATAATAAAAACAAAGCAAACAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAATAAAATAGCAAGGCAAACAATAATAAAAACAAAGCAAACAA  932

seq1  CAAAATATAGAATAATAAAAGACTTTGAAGCAATAGGGGGAAAAAAAAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATAGAATAATAAAAGACTTTGAAGCAATAGGGGGAAAAAAAAAA  982

seq1  CAAACCAAGTCCTGGGTATCAATTGTGAGCAGAACTCTGAAGCGGCAGCG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAGTCCTGGGTATCAATTGTGAGCAGAACTCTGAAGCGGCAGCG  1032

seq1  ATGCATCAAGAGGGAATTC  1063
      |||||||||||||||||||
seq2  ATGCATCAAGAGGGAATTC  1051

seq1: chr13_23981519_23982636
seq2: B6Ng01-248C21.g_66_1174

seq1  GAATTCCTTTGGTTGTTCCCACACACACAGTATGGGCCAGGGTAAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGGTTGTTCCCACACACACAGTATGGGCCAGGGTAAGGTGG  50

seq1  TCAGCACACATCGTGGCCACATTGCTCATAGAGGAGCCTCCAAAATCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACACATCGTGGCCACATTGCTCATAGAGGAGCCTCCAAAATCCTG  100

seq1  CTTCTCGAAATATATGATGTCAGAGAGGCAGAAGACACCGGCAGAACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGAAATATATGATGTCAGAGAGGCAGAAGACACCGGCAGAACTAC  150

seq1  AGAAATTCCTTGGTAGGGGCCATGACCTCACTAGAGAAGGGAAATTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCCTTGGTAGGGGCCATGACCTCACTAGAGAAGGGAAATTCAAG  200

seq1  GCAAAAGGGGGTCAGATCTCTTGCTGAGCATAGAGCCAGTCACACCCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGGGGTCAGATCTCTTGCTGAGCATAGAGCCAGTCACACCCGTT  250

seq1  CTTCCTGCAAGTCCATTCAATTCTTGATTATTGTCAGCTGAGCAAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCAAGTCCATTCAATTCTTGATTATTGTCAGCTGAGCAAACTTT  300

seq1  TCTGCTAACTTCTCAAATGTGAGGAAATAAAATTTCAGAAGTTTGCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAACTTCTCAAATGTGAGGAAATAAAATTTCAGAAGTTTGCAAAG  350

seq1  TTGTCTCTGCCCAGGAAGAAATCCTGCCCTTGCGTAAGTGTGAGAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTGCCCAGGAAGAAATCCTGCCCTTGCGTAAGTGTGAGAGAAGA  400

seq1  GAAAAAATGAATAAAATGTCCCCTTTGCACATGAAACAATGAGCCAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGAATAAAATGTCCCCTTTGCACATGAAACAATGAGCCAACAA  450

seq1  GAGTTTGACATCCATACTCAAATCCTGTTCCTCCCCAAATTTTTTAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGACATCCATACTCAAATCCTGTTCCTCCCCAAATTTTTTAAAAC  500

seq1  ATTTTTTTTAATCTTATGTGTATGGGTGTGCCTGCGTACGATATATATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAATCTTATGTGTATGGGTGTGCCTGCGTACGATATATATGC  550

seq1  CTGAGGGCCACAGAGTCTGAAACAGAAGGTAATATCTTCTTGAACTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCCACAGAGTCTGAAACAGAAGGTAATATCTTCTTGAACTGGAG  600

seq1  TCACAGCCCATTGTGAGACACCAAGTGGGTGTTAGAAATAGCGAACCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCCATTGTGAGACACCAAGTGGGTGTTAGAAATAGCGAACCTCA  650

seq1  GTCCGTTGGAAAAGCCTCTAGTGCTCTTACCCTCTAACTCATCTTTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTGGAAAAGCCTCTAGTGCTCTTACCCTCTAACTCATCTTTCCAG  700

seq1  CCCCATCAAACCCTATTTCTTCTAAATGTCTCATGCAGAGAATTGTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCAAACCCTATTTCTTCTAAATGTCTCATGCAGAGAATTGTTCTA  750

seq1  CAAGACCTGAGCTTTCTAGTTGGAGCAAACTCAGTTTTTCTAGAGAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCTGAGCTTTCTAGTTGGAGCAAACTCAGTTTTTCTAGAGAAACA  800

seq1  TCCTGAACTCATGCTCCATGGGGTTTCAGGACACATGGCACAAAACTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACTCATGCTCCATGGGGTTTCAGGACACATGGCACAAAACTGGG  850

seq1  GGAAAAAATCACAAACCACTTGAAGAAGTGTGAAACAAACACACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||         |
seq2  GGAAAAAATCACAAACCACTTGAAGAAGTGTGAAACAAAC---------C  891

seq1  ACACACACACACACACACACACACACACACAGAATGAGAGCGTCAAAGAT  950
      |||||| ||||||||||| | | | | | |||||||||||||||||||||
seq2  ACACAC-CACACACACAC-CCCCCCCCCCCAGAATGAGAGCGTCAAAGAT  939

seq1  ATCAGAAGTGATGCAGGCATTTAAAGAGGTGAAAGTAG-AGACAAA-GGA  998
      ||||||||||||||| |||||| ||||||||||||||| ||||||| |||
seq2  ATCAGAAGTGATGCA-GCATTT-AAGAGGTGAAAGTAGAAGACAAAGGGA  987

seq1  TGTCAGAAGCATGA-CAGGTGT--CAAATTGTCTTATCTACCCCTTGTGG  1045
      ||||||| |||||| |||||||   |||| ||||||||||||||||||||
seq2  TGTCAGAGGCATGACCAGGTGTTCAAAATGGTCTTATCTACCCCTTGTGG  1037

seq1  TCAACAATATAACAAATTAAAAATAGAAATATC-AGACATAATGTAAACA  1094
      || |||||||||| || |||||||||||||||| |||| |||||||| ||
seq2  TC-ACAATATAACCAA-TAAAAATAGAAATATCGAGACTTAATGTAACCA  1085

seq1  AAAGGAGCCTATAAGGCCTCTGCT  1118
      || |||||||||||||||||||||
seq2  AATGGAGCCTATAAGGCCTCTGCT  1109