BAC Information

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BAC

Clone NameB6Ng01-249H08
Chromosome13 (Build37)
Map Location 18,220,363 - 18,221,389
singlet/doubletsinglet
Overlap genePou6f2
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik
Downstream geneVps41, Amph, LOC624044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249H08.bB6Ng01-249H08.g
ACCGA057272GA057273
length1,1791,025
definitionB6Ng01-249H08.b B6Ng01-249H08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttagtagctgagtagcacgccattgtgtaaatgtacc
acattttctgtatccattcctctgttgagggacaactgggttctttccag
cttctggctattataaataaagctgctatgaacatagtggagcatgtgcc
cttattacatgttggagcatcttttgggtatatgcccaggagtggtatta
gtgagttctcaggtagttcaattttctgaggaaccaccaaacttatttcc
agagtggttgtaccagcttgcaatcccaccagcaatggaggagtgtttct
cttttgtcacaaccttgtcagcatctgctgtcaactgagtttttgatctt
agccattctgacaggtataaagttgaatctgagggttgttttgatttgta
tgtccctgatgtctaaggatgttgagcatttctttaggtgcttctcagcc
attcactattcctcagttgagaattctttgtttacctctgtaccccattt
ttaatagggttatttggttctctggagtctaacttcttgagttctttgta
tattttggatgttagctctctatcggatgtaggattggtaaagatctttt
cacaatctgttcgtggccattttgttctacggacagtgtcctttgcctta
cagaaactgtgcaattttatgaggtcccatttgtcgattcttgatcttag
agcataagccattggtgttctattcaggaaagtttcccctgcgccaatgt
gttccagattttcccactttctcttctattagtttcagtgtatctggttt
tatgtggaggtcctttgatccacttggacttgagctttgtacaaggaggt
aagaatgggtccatttgcatattttttacatgctggccgccaattgaacc
agcaacattttgttaaaatgttcttcctcccccccccgatggttttagtt
cctttatcaatatcaagtgaccatatgtatgtgggttcatttctggggtc
tcaattctattcgattatcttcctgcctgtctctgtaccaatacatgcag
ttttttatttttggtttttatcactatgccctgtaagtatacagcttggg
tcaggggtgctgaattccccgaagtcttgaacagtttctgaatcctgttt
ttttttttggtgtggagttccagttgtac
gaattccaattaagacatttcaaagagagaccttcttgtatttgtctttg
caccgtatatgtagaggcttaccagcaaagtgggtctgaatccctctacc
aaggacctccccttgctggctgctgttattaagccctcaagaattgtgcc
cttgctctgggaagtggcagggtaaacagaagtggcttaccctgggatag
aagtgtcttgaaggatggcttgtgcaggaggaaggtgtgctgaagggtga
gagacaaagaaggtatcctgatggtttccccaccgctctgtggctgctca
gtgataaacatcctgactggttgtgtgttgacatgttgatcctattttaa
aaacatctccacagatcctcaaacagcagcgggtgaggtggacggggtta
atctggaagagatccgagaatttgccaaagcttttaaaatccgacgcctg
tcccttggcctgacacagactcaggtgggacaagccctcagtgccacaga
gggccccgcatacagccagtcggccatctgcaggtaacgggcactgcatg
ctgtcacctgtcctggccagcccgggccttgtttgtccttgcagctcagc
ttgtcttctttgggtgggcaaactagacaaacagacagagcatgcaatta
agaactggggtagttgtatgttgggaccggtgaagttgatacaaagtgga
gtgccaatgcagcgttgaggggtcctgatcttctaactcctatcaactgt
tagaacttccaaggctggctggttgaaatatgctgctctggccaggggtc
ttccttcttcctccatgcccctgccagatgagaataccaattcctgtcaa
cacaggggcatccccaagtaaaagaaagcagctagtcatcctactgttaa
ccacccagagatggctccaaagtgtccatgaaatgcacattttaacaatc
tctctatttttgtgaagggattttgtatagcttgctttgccagacacatt
ctttatagcaaggaaaaggtaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18220363_18221389
seq2: B6Ng01-249H08.g_67_1091 (reverse)

seq1  TACTTTCCCTTTTCCTTGCTTATAAAG-ATGTGTCTGGCAAAGCAAGCTA  49
      ||| || |||||||||||| ||||||| ||||||||||||||||||||||
seq2  TAC-TTACCTTTTCCTTGC-TATAAAGAATGTGTCTGGCAAAGCAAGCTA  48

seq1  TACAAATTCCTTCCAC-AAAATAGAGAGATTTGTTAAAATGTGCATTTCA  98
      |||||| ||| | ||| |||||||||||| ||||||||||||||||||||
seq2  TACAAAATCCCTTCACAAAAATAGAGAGA-TTGTTAAAATGTGCATTTCA  97

seq1  TGGACACTTTGGAGCCATCTCTGGGTGGTTAACAGTAGGATGGACTAGCT  148
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGACACTTTGGAGCCATCTCTGGGTGGTTAACAGTAGGAT-GACTAGCT  146

seq1  GCTTTGCTTTTACTTGGGGATGCCCCTGTGTTGACAGGAATTGGTATTCT  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTT-CTTTTACTTGGGGATGCCCCTGTGTTGACAGGAATTGGTATTCT  195

seq1  CATCTGGCAGGGGCATGGAGG-AGAAGGAAGACCCCTGGCCAGAGCAGCA  247
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATCTGGCAGGGGCATGGAGGAAGAAGGAAGACCCCTGGCCAGAGCAGCA  245

seq1  TATTTCAACCAGCCAGCCTTGGAAGTTCTAACAGTTGATAGGAGTTAGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAACCAGCCAGCCTTGGAAGTTCTAACAGTTGATAGGAGTTAGAA  295

seq1  GATCAGGACCCCTCAACGCTGCATTGGCACTCCACTTTGTATCAACTTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGACCCCTCAACGCTGCATTGGCACTCCACTTTGTATCAACTTCA  345

seq1  CCGGTCCCAACATACAACTACCCCAGTTCTTAATTGCATGCTCTGTCTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCCCAACATACAACTACCCCAGTTCTTAATTGCATGCTCTGTCTGT  395

seq1  TTGTCTAGTTTGCCCACCCAAAGAAGACAAGCTGAGCTGCAAGGACAAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGTTTGCCCACCCAAAGAAGACAAGCTGAGCTGCAAGGACAAAC  445

seq1  AAGGCCCGGGCTGGCCAGGACAGGTGACAGCATGCAGTGCCCGTTACCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCGGGCTGGCCAGGACAGGTGACAGCATGCAGTGCCCGTTACCTG  495

seq1  CAGATGGCCGACTGGCTGTATGCGGGGCCCTCTGTGGCACTGAGGGCTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCCGACTGGCTGTATGCGGGGCCCTCTGTGGCACTGAGGGCTTG  545

seq1  TCCCACCTGAGTCTGTGTCAGGCCAAGGGACAGGCGTCGGATTTTAAAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTGAGTCTGTGTCAGGCCAAGGGACAGGCGTCGGATTTTAAAAG  595

seq1  CTTTGGCAAATTCTCGGATCTCTTCCAGATTAACCCCGTCCACCTCACCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCAAATTCTCGGATCTCTTCCAGATTAACCCCGTCCACCTCACCC  645

seq1  GCTGCTGTTTGAGGATCTGTGGAGATGTTTTTAAAATAGGATCAACATGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTTTGAGGATCTGTGGAGATGTTTTTAAAATAGGATCAACATGT  695

seq1  CAACACACAACCAGTCAGGATGTTTATCACTGAGCAGCCACAGAGCGGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACAACCAGTCAGGATGTTTATCACTGAGCAGCCACAGAGCGGTG  745

seq1  GGGAAACCATCAGGATACCTTCTTTGTCTCTCACCCTTCAGCACACCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCATCAGGATACCTTCTTTGTCTCTCACCCTTCAGCACACCTTC  795

seq1  CTCCTGCACAAGCCATCCTTCAAGACACTTCTATCCCAGGGTAAGCCACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCACAAGCCATCCTTCAAGACACTTCTATCCCAGGGTAAGCCACT  845

seq1  TCTGTTTACCCTGCCACTTCCCAGAGCAAGGGCACAATTCTTGAGGGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTACCCTGCCACTTCCCAGAGCAAGGGCACAATTCTTGAGGGCTT  895

seq1  AATAACAGCAGCCAGCAAGGGGAGGTCCTTGGTAGAGGGATTCAGACCCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGCAGCCAGCAAGGGGAGGTCCTTGGTAGAGGGATTCAGACCCA  945

seq1  CTTTGCTGGTAAGCCTCTACATATACGGTGCAAAGACAAATACAAGAAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGGTAAGCCTCTACATATACGGTGCAAAGACAAATACAAGAAGG  995

seq1  TCTCTCTTTGAAATGTCTTAATTGGAATTC  1027
      ||||||||||||||||||||||||||||||
seq2  TCTCTCTTTGAAATGTCTTAATTGGAATTC  1025