BAC Information

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BAC

Clone NameB6Ng01-249H11
Chromosome13 (Build37)4 (Build37)
Map Location 66,769,927 - 66,770,548146,950,693 - 146,951,813
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249H11.bB6Ng01-249H11.g
ACCGA057278GA057279
length1,0401,121
definitionB6Ng01-249H11.b B6Ng01-249H11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,769,927 - 66,770,548)(146,950,693 - 146,951,813)
sequence
gaattcatacaggagagaaaccttataaatgcagtgaatgtgacaaatgc
tttacccgaaaatcacatcttagtattcatcagagaattcatacaggaga
gaaactgtacaaatgcagtgaatgtgacaaatgctttacccaacaatgcc
atcttagtattcatcagaaaattcattcaggagagaaccttacaaatgca
atgaatgcgacaaatgctttagtgacaaacacagtctgagaaggcatcag
agaattcatacaggagagacaccttacaaatgtaatgaatgtgacaaatg
ctttacctgaaaatcacatcttagtattcatcagagaattcatacaggag
agaaaccttacaaatgtaatgaatgtgacaaatcctttactgaaaatggc
tgtctgagaattcatcagagaattcatacaggagagaaaccttacaaatg
taatgaatgtgacaaatgctttacctgaaaatcacatcttagtattcatc
agataattcatacagaagagaaaccttacaaatgtagtgaatgtgacaaa
tcctttactgaaaatggctgtctgagaattcatcagagaattcatacagg
agagaaaccttacaaatgtagtgaatgtgacaaatgctttactaaaaaat
ccagtttgaggattcatcagagatttcatacaggagagaaaccttacaaa
tgtagtgaatgtgacaaatgttttattcaaaaatgcagtctgataattca
tcagagaattcatacaggagagaaaccttacaaatgtagtgaatgtgaca
aagctttactgagaaagtcaatctgagaaggcatcagagaactcatacag
gggagaattcttacaaatgtattgaatgtgacaaatgttttgcccagaaa
tcctatcttgtttttaatcacagaaatcatacattaaagaagccttacaa
atgcagtcaatgtgacaatgattttcccacaaacttagtcttgagaatgc
atcagagaattcatacagtagaagaaaacttacaaaaatg
gaattcctgtgcttgttccctctttatgtcatttgtccacattgaatggt
gttcagattatattttgacttttgtctcttgagtttgtttcataattcat
tttgtcatgagaattggtgttgcattagtgatttggggtagggaaatttt
attaacattgtcaaattgctttagctccagcctctcaattttcttttgct
gtgtgtcgtttaggtcaggtgacagggatttctgtatcaggtgttgtgaa
taaactttgagaatctagggtggtgggagcaactaggttacagttacagt
ctaaatatatcattacttactttcatgactgcactttgtcaagattcctg
gtatcattttgcttttaatgtttatatatataaatgtggtttagcattgt
ctgtaatgatgttgtatttatttcatctttgaatcattcagaccttgatg
tgaaatttcaagaagaattcaatctttgttcttcacagagaccctgggag
aaggacaacaacaagaatgagtgagtctctggtaaatacaccacaggtct
gtgtcctttacacatttcttttttaaaaaaatctctttttattcaagtca
tccaaaaattttaatctctacatgtggaatggtatctaaagggcttattt
tctatgatctatatcttttgtaataatgagaatttagtgtttttcccttt
catgcatataatggctttatattttaacttgatttttatattgtgaggat
atataattccctttggactagagatctgcatgtctcaaataggatctatt
acagtgatgctcaaagaacagactgatgggttattttctatgttgaataa
agttctgtccttttgtattagtgtgaagtaaaggtctcttgtgccacata
attgcatttcagggatggtcaggtttctaaaccataaactttgtgaattg
atgatatagaaataagtataaattcacatccactaaagaagatatgaaag
gagtagatttggagaagctaaaatatatagatccactgtttttgatccta
tagtaaattattaatagcctcctagggtcacggaaaggaagaaaattctt
tcttttaccattaggggtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66769927_66770548
seq2: B6Ng01-249H11.b_387_507 (reverse)

seq1  CACATTCATTGCATTTGTAAGGTTTCTCTAAAACGTGTGTTCCTTTAAGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTGGAGAGTACAGTGACACGCAAAGGCTTTAACACTTTTATTACGATC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGGGCTTCTCTCAACTATGTGCTCATTTATGTACTTGGAAATGACTGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GATATGTAAATGTTTTCTCATATCAATTACATTCATAAGGTTTCTCTCCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GCACAGTTTTTCCGTGTATTTGGAGATGACTATGGCCTCAAAAGGGATTA  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTATTCATTATATTCATGCAGTTTTTCTGCCATATGTGTTCTTTTATG  300
                                                        
seq2  --------------------------------------------------  0

seq1  TATGGGGTGATGACTGTGTCACACAAGGGATTAGTACTCTGGAAAAATGG  350
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGAGTTACTTTTTTGAATGTGTTCTTTTAAGTAGTTGCAGATGACAGT  400
                                                        
seq2  --------------------------------------------------  0

seq1  AAATTGCCAAGGTTTTTACCACAGTGATTACAATAATGAGGGTTCTCCCC  450
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGTGCTGTATTTTGTGTACGTGGGAAGAATATGACATGCAAAGGCTTT  500
                                                        
seq2  --------------------------------------------------  0

seq1  ACTGCATTGACAACATTCATGAGGTTTCTCTCTTGTATGTGATCTTTTAT  550
          |||| |  |||||  | ||||||||||| ||||||   ||| | ||
seq2  --CACATTCATTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGAT  48

seq1  GTCATTGCAGA-TGACTGTGACTTGAAATGCTTTACAACACTGATTACAT  599
      |   |  ||||  | |  |  |   ||| | |||   ||| | |||||||
seq2  GAATTCTCAGACAGCCATTTTCAGTAAAGGATTTGTCACATTCATTACAT  98

seq1  TCATAAGGTTTCTCTCCTGTATG  622
      |  ||||||||||||||||||||
seq2  TTGTAAGGTTTCTCTCCTGTATG  121

seq1: chr4_146950693_146951813
seq2: B6Ng01-249H11.g_67_1187

seq1  GAATTCCTGTGCTTGTTCCCTCTTTATGTCATTTGTCCACATTGAATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGCTTGTTCCCTCTTTATGTCATTTGTCCACATTGAATGGT  50

seq1  GTTCAGATTATATTTTGACTTTTGTCTCTTGAGTTTGTTTCATAATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATTATATTTTGACTTTTGTCTCTTGAGTTTGTTTCATAATTCAT  100

seq1  TTTGTCATGAGAATTGGTGTTGCATTAGTGATTTGGGGTAGGGAAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATGAGAATTGGTGTTGCATTAGTGATTTGGGGTAGGGAAATTTT  150

seq1  ATTAACATTGTCAAATTGCTTTAGCTACAGCCTCTCAATTTTCTTTTGCT  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTAACATTGTCAAATTGCTTTAGCTCCAGCCTCTCAATTTTCTTTTGCT  200

seq1  GTGTGTCGTTTAGGTCAGGTGACAGGGATTTCTGTATCAGGTGTTGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCGTTTAGGTCAGGTGACAGGGATTTCTGTATCAGGTGTTGTGAA  250

seq1  TAAACTTTGAGAATCTAGGGTGGTGGGAGCAACTAGGTTACACTTACAGT  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAACTTTGAGAATCTAGGGTGGTGGGAGCAACTAGGTTACAGTTACAGT  300

seq1  CTAAATATATCATTACTTACTTTCATGACTGCACTTTGTCAAGATTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATATCATTACTTACTTTCATGACTGCACTTTGTCAAGATTCCTG  350

seq1  GTATCATTTTGCTTTTAATGTTTATATATATAAATGTGGTTTAGCATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTTTGCTTTTAATGTTTATATATATAAATGTGGTTTAGCATTGT  400

seq1  CTGTAATGATGTTGTATTTATTTCATCTTTGAATCATTCAGACCTTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGATGTTGTATTTATTTCATCTTTGAATCATTCAGACCTTGATG  450

seq1  TGAAATTTCAAGAAGAATTCAATCTTTGTTCTTCACAGAGACCCTGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTCAAGAAGAATTCAATCTTTGTTCTTCACAGAGACCCTGGGAG  500

seq1  AAGGACAACAACAAGAATGAGTGAGTCTCTGGTAAATACACCACAGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAACAACAAGAATGAGTGAGTCTCTGGTAAATACACCACAGGTCT  550

seq1  GTGTCCTTTACACATTTCTTTTTTAAAAAAATCTCTTTTTATTCAAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTTACACATTTCTTTTTTAAAAAAATCTCTTTTTATTCAAGTCA  600

seq1  TCCAAAAATTTTAATCTCTACATGTGGAATGGTATCTAAAGGGCTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAATTTTAATCTCTACATGTGGAATGGTATCTAAAGGGCTTATTT  650

seq1  TCTATGATCTATATCTTTTGTAATAATGAGAATTTAATGTTTTTCCCTTT  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTATGATCTATATCTTTTGTAATAATGAGAATTTAGTGTTTTTCCCTTT  700

seq1  CATGCATATAATGGCTTTATATTTTAACTTGATTTTTATATTGTGAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATATAATGGCTTTATATTTTAACTTGATTTTTATATTGTGAGGAT  750

seq1  ATATAATTCCC-TTGGACTAGAGACCTGCATGTCTCAAATAGGATCTATT  799
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  ATATAATTCCCTTTGGACTAGAGATCTGCATGTCTCAAATAGGATCTATT  800

seq1  ACAGTGATGCTCAAAGAACAGACTGATGGG-TATTTTCTATGTTGAAT-A  847
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  ACAGTGATGCTCAAAGAACAGACTGATGGGTTATTTTCTATGTTGAATAA  850

seq1  AGTTCTGTCCTTTTGTATTAGTGTGAAGT-AAGGTCTCTTGTGCCACATA  896
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  AGTTCTGTCCTTTTGTATTAGTGTGAAGTAAAGGTCTCTTGTGCCACAT-  899

seq1  AATTGCATTTCAGGGATGGTCAGGTTTCTAAA-CATAAAC-TTGTGAA-T  943
      |||||||||||||||||||||||||||||||| ||||||| ||||||| |
seq2  AATTGCATTTCAGGGATGGTCAGGTTTCTAAACCATAAACTTTGTGAATT  949

seq1  GAGGATATAGAAATAAGTATAAATTCACAT-CACTAAAGAAGATATGAAA  992
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATGATATAGAAATAAGTATAAATTCACATCCACTAAAGAAGATATGAAA  999

seq1  -GAGTAGAATTTGTAGAAGCTAAAATTATATAAGATCCACTGTTTTGAAT  1041
       |||||| ||||| ||||||||||| ||||| ||||||||||||||  ||
seq2  GGAGTAG-ATTTGGAGAAGCTAAAA-TATAT-AGATCCACTGTTTTTGAT  1046

seq1  CCTAATAGTAAATATATTATTAGCTCCCTAGGGTCACAGATAATGGAAGG  1091
      ||| ||||||||| ||||| ||||  ||||||||||| |  || |||| |
seq2  CCT-ATAGTAAAT-TATTAATAGCCTCCTAGGGTCACGG--AAAGGAA-G  1091

seq1  AAAATATCTTTCTTTTACCATTA-GTGTGAT  1121
      ||||| ||||||||||||||||| | |||||
seq2  AAAAT-TCTTTCTTTTACCATTAGGGGTGAT  1121