BAC Information

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BAC

Clone NameB6Ng01-249H17
Chromosome13 (Build37)
Map Location 26,258,117 - 26,395,900
singlet/doubletdoublet
Overlap geneLOC666221
Upstream geneNrsn1, Tpi-rs8, LOC214973
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249H17.bB6Ng01-249H17.g
ACCGA057290GA057291
length1,0241,018
definitionB6Ng01-249H17.b B6Ng01-249H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,394,949 - 26,395,900)(26,258,117 - 26,259,068)
sequence
gaattcctgcccccattatttcttccctgtgaactggcagctggtatctt
ttatgggagggatctcatcaggacaaacacatccctgcgatatattaatt
ctcatctgctcaggaacccgataaagaacaatatgaacgtggacttatcc
tgcctaacatgcccttggttaaaaatggacattctattgagttacaacat
gtcttaagacggagaccctcccctcacgtgaataatgtgtgctactctca
atttcaatgtggttacaaataactgcgacgttacccacctaaatttcaag
gtgatgtgattttcctgccctcactatcttgtcctaggtttttaccgcca
acctccttgccaaggattctcccatgaagaaccgtccacttaaccaggtg
gagagaactgcggatattgccgcccaattgtggattaaaaaaataaatga
gattgttcaacgttgggggatgctaatgttggatctgggtgaaaattaac
gtttaaatggaagacactcacaccgctttaagatcgaaactatttgtagg
tgcctgtggtctgaggacaacgaaggtaaggaccctccccccttttagtt
ggcttgaatctcacagtacttcttgaagtgcattttgtagtcagttccag
acacatcattttaggagcttgtcagaaaaagaaatatcatgtgttgactc
atatcaagtggactcaagacatttgtagaaggcccctgcaaaatgggact
tagcaagccctccttgagactattgccaatgatagcttgagagttactaa
gaaagtccttggtacaaaagtattccctgtcatttggtgttgaaaaattc
aacatcaagtatttttgaattatcctttaataaataaattttctacatca
aaaattacttaatgctgaaaaatcatttcatgatttaaaaaccattagtc
attccctaattttattgtacttcgttaaatgacagattgtggtttttctt
gtaattgtgttgaggttgagggtt
gaattcaaatcccaatactaacaaatgtcctgaacgttgtccaaacaatg
tcctttcctaaaatccccaaaagagcttcttcaccaatttccctcccccg
ccactcacctcccccatgtctccccctgatgtccttttcctctccgacct
gttctcctcctgttcttgggcactaactccagcaagctggtctgagagtt
tgggacagactgtattaattattttctgcctactatgatgaaatatgagg
ctaaaacaacttagaacgagaatgatatttttcttgtgacggtcttaccc
tccccatatcagcttggaggcatggagccagggcaggattagaaaaccca
actcttccctttaaagataaacttccgcggtttacactctacttcctaaa
ggttcccagcctttcctaaacagtgctagtggagaccaagtgttcaagca
cctgaatgtatggggtatatttcacagctgaccaggatcagaggctccag
gctggtgaagaagagacaaaagaaaacacaatgtacttggtgagctaatt
cagaaggaaatcgggtattactgaaaaaagatccctaaattgtccttgtc
tgtatttctgaaagttacagtaacaacatccggcatatgcatccttgaag
acactcatgattgttaaagtttcttctggttgcttctacttcccctaatt
ttgtaagggcaaattttatttaatgttgatgttatagaacattaataagc
agaactaagtaaacccaattgatttcatgatgatttatcttttcaaaaaa
caagtgtaaagaacaagtgcactggctagttttgtgtcaacttgacacac
ctggagttattagagagaaaggagcttcagttgaggaaatgcctccatga
gaaccagctgtaggcatttttctcaattagtgattaagggggaaaggccc
ttgtgtgtgaataccattctcttggcctggaagttcttgggtttcattaa
gaggagcaaggttgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26394949_26395900
seq2: B6Ng01-249H17.b_111_1065 (reverse)

seq1  AACCCTCAACCTCAACACATTAACAAG-AAAACCACAATCTGTCATTTAA  49
      ||||||||||||||||||| | ||||| ||||||||||||||||||||||
seq2  AACCCTCAACCTCAACACAATTACAAGAAAAACCACAATCTGTCATTTAA  50

seq1  CGAAGTACATTAAAATTAGGGAATGACTAATGGTTTTT-AATCATGAAAT  98
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  CGAAGTACAATAAAATTAGGGAATGACTAATGGTTTTTAAATCATGAAAT  100

seq1  GATTTTTCAGCATTAAGTAA-TTTTGATGTAGAAAATTTATTTATT-AAG  146
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  GATTTTTCAGCATTAAGTAATTTTTGATGTAGAAAATTTATTTATTAAAG  150

seq1  GATAATTCAAAAATACTTGATGTTGAATTTTTCAACACCAAATGACA-GG  195
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATAATTCAAAAATACTTGATGTTGAATTTTTCAACACCAAATGACAGGG  200

seq1  AATACTTTTGTACCAAGGACTTTCTTAGTAACTCTCAAGCTATCATTGGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTTGTACCAAGGACTTTCTTAGTAACTCTCAAGCTATCATTGGC  250

seq1  AATAGTCTCAAGGAGGGCTTGCTAAGTCCCATTTTGCAGGGGCCTTCTAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCTCAAGGAGGGCTTGCTAAGTCCCATTTTGCAGGGGCCTTCTAC  300

seq1  AAATGTCTTGAGTCCACTTGATATGAGTCAACACATGATATTTCTTTTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTTGAGTCCACTTGATATGAGTCAACACATGATATTTCTTTTTC  350

seq1  TGACAAGCTCCTAAAATGATGTGTCTGGAACTGACTACAAAATGCACTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCTCCTAAAATGATGTGTCTGGAACTGACTACAAAATGCACTTC  400

seq1  AAGAAGTACTGTGAGATTCAAGCCAACTAAAAGGGGGGAGGGTCCTTACC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTACTGTGAGATTCAAGCCAACTAAAAGGGGGGAGGGTCCTTACC  450

seq1  TTACTTGTCCAGAACTCACAGGCACCTACAATTAACTTCACAATTAAAGC  495
      ||  ||||||  |   ||||||||||||||| ||  |||    |||||||
seq2  TTCGTTGTCCTCAGACCACAGGCACCTACAAATAGTTTCGATCTTAAAGC  500

seq1  --ACTTATTATCACAAATGGCTAAACACTAAGTGATGTGTCAGATCACTG  543
          | | | ||    ||   |||||  ||| |  |    ||||||    
seq2  GGTGTGAGTGTCTTCCAT--TTAAACGTTAA-TTTTCACCCAGATCCAAC  547

seq1  TTTAGCATCACCCAAAGTTAAATGATCTCCTGTACTTCTTATTTAGCCAA  593
       |||||||| ||||| ||| ||  ||||| | || || ||   |   |||
seq2  ATTAGCATCCCCCAACGTTGAACAATCTCATTTATTTTTTTAATCCACAA  597

seq1  TACGAAGAGTAGAGCCAAACATATCAAACCCTGTTTAAATAGACACAATT  643
      |  |  |   | | ||  |  | ||    |||| |||| | |||     |
seq2  TTGGGCGGCAATATCCGCAGTTCTCTCCACCTGGTTAAGTGGAC---GGT  644

seq1  TCTATCA----CTAATC----ACAACAGTGTGGGGCTTGCC---AAAAAC  682
      ||| |||      ||||     |||      || | ||| |   ||||||
seq2  TCT-TCATGGGAGAATCCTTGGCAA------GGAGGTTGGCGGTAAAAAC  687

seq1  CTATAAAACTAATGGGATTGCAGGAAAATCACATCACCTCTAAATCTAGG  732
      |||  | |  |  | ||  ||||||||||||||||||||  |||| ||||
seq2  CTAGGACAAGATAGTGAGGGCAGGAAAATCACATCACCTTGAAATTTAGG  737

seq1  CTGGTAACATCAATGCTATTTGTAACAACATGGAAATTGACAGTAGCACA  782
        |||||| ||   | |||||||||| |||| |||||||| |||||||||
seq2  TGGGTAACGTCGCAGTTATTTGTAACCACATTGAAATTGAGAGTAGCACA  787

seq1  TTTTATGCCTGTTAAGGGAAGGTCTCCCTCCTAAGAATTAGTGTTA--CA  830
        |||| |  || | |||| ||||||| || |||||  |  ||| |  ||
seq2  CATTATTCACGTGAGGGGAGGGTCTCCGTCTTAAGACATGTTGTAACTCA  837

seq1  TTTGTGAGTCCAGATCTTTCTACAATGGCATCTTAGACAGGATAAGTGCT  880
       | |   ||||  || |||   ||| ||||| |||| |||||||||| | 
seq2  ATAGAATGTCC--ATTTTTAACCAAGGGCATGTTAGGCAGGATAAGTCCA  885

seq1  GGTCTTATATTTGATGCTAATTGAAAAGTGAATG---ATATTGGAATTAA  927
       || | ||| ||| |  | || |    ||   ||   | ||  |||||||
seq2  CGT-TCATA-TTGTTCTTTATCG---GGTTCCTGAGCAGATGAGAATTAA  930

seq1  TATATCGCAAGGATGTGTTTGTCCT  952
      ||||||||| |||||||||||||||
seq2  TATATCGCAGGGATGTGTTTGTCCT  955

seq1: chr13_26258117_26259068
seq2: B6Ng01-249H17.g_135_1084

seq1  AAAAGAGCAAAAGGAGCTACAAAACCAATTTCCCTCTTTATAGCAA--GA  48
               ||| ||||| |   |||||||||||||      || |   |
seq2  ---------AAAAGAGCTTCTTCACCAATTTCCCTC--CCCCGCCACTCA  39

seq1  ACTCCCAAATGTCACTTTATGATGTCCTTATATAATAGGACATGTACTCC  98
       |||||  ||||| |    |||||||||| |    |  ||| ||| ||||
seq2  CCTCCCCCATGTCTCCCCCTGATGTCCTTTTCCTCTCCGACCTGTTCTCC  89

seq1  TCCTGTCATTGTAGACTACTACCAGGAAGCTGGTCTGAGAAGCAGGGGAC  148
      ||||||  |||   ||||   |||| ||||||||||||| ||   |||||
seq2  TCCTGTTCTTGGGCACTAACTCCAGCAAGCTGGTCTGAG-AGTTTGGGAC  138

seq1  AGACTGTATTAATTATTTTCTGCATCACTATGATAAAATATATGGCTAAA  198
      ||||||||||||||||||||||| | |||||||| ||||||  |||||||
seq2  AGACTGTATTAATTATTTTCTGCCT-ACTATGATGAAATATGAGGCTAAA  187

seq1  ACAACTTAAGACCAGGAGGATATTTTTCTTGTGACAGTTTTACAGTCCCC  248
      ||||||||  || || | ||||||||||||||||| || ||||  |||||
seq2  ACAACTTAGAACGAGAATGATATTTTTCTTGTGACGGTCTTACCCTCCCC  237

seq1  ATTTCATCATGGAAGCATGGAGCCAGGGCAAGAGTAGAAACCCCAACTCT  298
      || ||| | |||| |||||||||||||||| || |||||| |||||||||
seq2  ATATCAGCTTGGAGGCATGGAGCCAGGGCAGGATTAGAAAACCCAACTCT  287

seq1  TCCCTTTAATGATAAACTTCCTCTGTTTACACTCTACTTCCTAAAGGTTC  348
      ||||||||| ||||||||||| | ||||||||||||||||||||||||||
seq2  TCCCTTTAAAGATAAACTTCCGCGGTTTACACTCTACTTCCTAAAGGTTC  337

seq1  CCAGCCTTTCCTAAACAGTGCTAGTGGAGACCAAGTGTTCAAGCACCTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTTCCTAAACAGTGCTAGTGGAGACCAAGTGTTCAAGCACCTGA  387

seq1  ATGTATGGGGTATATTTCACAGCTGACCAGGATCAGAGGCTCCAGGCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGGGTATATTTCACAGCTGACCAGGATCAGAGGCTCCAGGCTGG  437

seq1  TGAAGAAGAGACAAAAGAAAACACAATGTACTTGGTGAGCTAATTCAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGAGACAAAAGAAAACACAATGTACTTGGTGAGCTAATTCAGAA  487

seq1  GGAAATCGGGTATTACTGAAAAAAGATCCCTAAATTGTCCTTGTCTGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCGGGTATTACTGAAAAAAGATCCCTAAATTGTCCTTGTCTGTAT  537

seq1  TTCTGAAAGTTACAGTAACAACATCCGGCATATGCATCCTTGAAGACACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGTTACAGTAACAACATCCGGCATATGCATCCTTGAAGACACT  587

seq1  CATGATTGTTAAAGTTTCTTCTGGTTGCTTCTACTT-CCCTAATTTTGTA  647
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATGATTGTTAAAGTTTCTTCTGGTTGCTTCTACTTCCCCTAATTTTGTA  637

seq1  AGGGCAAATTTTATTTAATGTTGATGTTTATAGAACATTAATAAGCAGAA  697
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGGCAAATTTTATTTAATGTTGATG-TTATAGAACATTAATAAGCAGAA  686

seq1  CTAAGTAAACCCAATTGA-TTCATGATGATTTATCTTTTC-AAAAACAAG  745
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  CTAAGTAAACCCAATTGATTTCATGATGATTTATCTTTTCAAAAAACAAG  736

seq1  TGT-AAGAACAAGTGCACTGGCTAGTTTTGTGTCAACTTGACACAGCTGG  794
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTAAAGAACAAGTGCACTGGCTAGTTTTGTGTCAACTTGACACACCTGG  786

seq1  AGTTATTAGAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTAGAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGAAC  836

seq1  CAGCTGTAAGGCA-TTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTT  893
      ||||||| ||||| ||||||||||||||||| |||||||||||| |||||
seq2  CAGCTGT-AGGCATTTTTCTCAATTAGTGATTAAGGGGGAAAGG-CCCTT  884

seq1  GTGTGTG-ATACCA-TCTC-TGGGCTGGTAG-TCTTGGG-TTCTATAAGA  938
      ||||||| |||||| |||| ||| |||| || ||||||| |||  |||||
seq2  GTGTGTGAATACCATTCTCTTGGCCTGGAAGTTCTTGGGTTTCATTAAGA  934

seq1  -GAGC-AGGCTGAGCA  952
       |||| ||| ||||||
seq2  GGAGCAAGGTTGAGCA  950