BAC Information

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BAC

Clone NameB6Ng01-249J02
Chromosome13 (Build37)
Map Location 26,467,753 - 26,493,683
singlet/doubletdoublet
Overlap genenone
Upstream geneTpi-rs8, LOC214973, LOC666221
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249J02.bB6Ng01-249J02.g
ACCGA057354GA057355
length9621,124
definitionB6Ng01-249J02.b B6Ng01-249J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,492,730 - 26,493,683)(26,467,753 - 26,468,860)
sequence
gaattctacagaaaggcagtatatttgtcaaaagatctgctctgcctctt
gactttgtcacttaattctttcaattctttagtatttttatatctctagt
gtaaaatatttctgttctcaaaacttttctgtgagatttgacttcagagg
caagggcaaggttaaaagctgaggctggcacaagcaattggctgtcccac
atggctatctgctttcagaactctgaggctatatgtgtgtgaaagcagga
acttcctactgaagtcagtcagagaactgataaataaacacagacagcaa
tatccatacacaaggagccttaataaattgtcaattcatatttcatccct
ctgaatttactaaactttttggttcttcgtttttattatatacctgaagt
agactaaatcctaagaaattttatcttaatatcaaatatttatttttcaa
tgatctttgatggataatatttatcattaaatatagaatgccactcagaa
tcattgaaaaacatttgaataggtctttgtaagactaatagaattcccca
cctaaattattcaatcaggatttcagcacagaatgaattatactaatcca
ttaaaaaattctactttaaaatcttctactcactttgccttgagaaattg
atgagaatatatgatatcagaacagacttgtaaaagttgtgcagacaaat
aaagaagcttttcagatgtcaggtgttaggatggagttggtgttacctta
agagtctagcatgacagattccatataggaatgtgaggttttggattgaa
ctttcagtgtaataaagttttcccagttttagtaaatataaactttactc
ccagaaccctgttaggtgttttttatgacacagataaaggaatgtacctt
ggttccctttttggaacattttacttactaatttgtagatcctcatgggg
gtattgagggaa

gaattcattttgtttttagtttttctcaagcataacctatgggcaaaaca
agggcaggtggtgaattgaggattctgaggaccactgggaatcatacttt
tttgtatgaacctaagtcagacccttgtttagagatgttggccataggta
aacagtagaattgacttagagaaaacagctagcaagttattcaaggaatt
gagtgaaaagattgtgtattctgaaatgagaaggtggcagcagtgaaaga
gaagaaaggagaaaacgggatactgcaattatcaggaaaacgattcctca
gacatcattttatttaatttcgatggtgaaggaagggctacatcattgga
tagacataaccttggtacaaatggataatcaagtggtaacaccagcctta
agattaacaaggaacaaaagttctagtctggaaacagatatatttctatc
atcttcatttaaaaatctgaagagtagatgacaatgtaataatgaattat
gaaaatggggaggcagttattagtgaatgggtagtattaacatcataaaa
ttagacaggaaactgaggcaccatttatagtgttctaagattggaagtag
cctggaggatgatgaggagataagttggctacttttgtatttttgtgaag
gtacagcatgaacaaggtcgttctcatgaaagaaagcatttaactggggt
ttgcttaccatttcagaagcttagtccattattgtaatggcagggaacat
tgtgggaaaaatggcactggggcagtagctgtaagctacattctaatcca
caggaggctgagagagaaaaacactaggtctgacttgagcttttgaaatc
tcaaagtcaaccctcagtaatacacttttacccaacaagatctcacctac
tccaacaggccacagcttcctagtccttcctaattctttcaaatagtggt
caactcacttctcttgtgaataagcccttcaattatataagcatttggga
ctaattttcattcgatcacctaacatatcgttcaagagacatggaaaaat
agcctaatgctggtaggagacaagatgaatctcagagacaacaggagctg
ttgcagacaatgcctgttcgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26492730_26493683
seq2: B6Ng01-249J02.b_47_1008 (reverse)

seq1  TTCCCTCAATA-CCCCATGAGGATCTACAAATTAGTAAGTAAAATGTTCC  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCAATACCCCCATGAGGATCTACAAATTAGTAAGTAAAATGTTCC  50

seq1  AAAAAGGGAA-CAAAGTACATT-CTTTATCTGTGTCAT-AAAAACACCTA  96
      |||||||||| ||| ||||||| ||||||||||||||| |||||||||||
seq2  AAAAAGGGAACCAAGGTACATTCCTTTATCTGTGTCATAAAAAACACCTA  100

seq1  ACAGGGTTCTGGGAGTAA--GTTATATTTACTAAAACTGG--AAACTTTA  142
      ||||||||||||||||||   |||||||||||||||||||  ||||||||
seq2  ACAGGGTTCTGGGAGTAAAGTTTATATTTACTAAAACTGGGAAAACTTTA  150

seq1  TTACACTGAAAGTTCAATCCAAAACCTCACATTCCTATATGGAATCTGTC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGAAAGTTCAATCCAAAACCTCACATTCCTATATGGAATCTGTC  200

seq1  ATGCTAGACTCTTAAGGTAACACCAACTCCATCCTAACACCTGACATCTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGACTCTTAAGGTAACACCAACTCCATCCTAACACCTGACATCTG  250

seq1  AAAAGCTTCTTTATTTGTCTGCACAACTTTTACAAGTCTGTTCTGATATC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTCTTTATTTGTCTGCACAACTTTTACAAGTCTGTTCTGATATC  300

seq1  ATATATTCTCATCAATTTCTCAAGGCAAAGTGAGTAGAAGATTTTAAAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCTCATCAATTTCTCAAGGCAAAGTGAGTAGAAGATTTTAAAGT  350

seq1  AGAATTTTTTAATGGATTAGTATAATTCATTCTGTGCTGAAATCCTGATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTTTAATGGATTAGTATAATTCATTCTGTGCTGAAATCCTGATT  400

seq1  GAATAATTTAGGTGGGGAATTCTATTAGTCTTACAAAGACCTATTCAAAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTTAGGTGGGGAATTCTATTAGTCTTACAAAGACCTATTCAAAT  450

seq1  GTTTTTCAATGATTCTGAGTGGCATTCTATATTTAATGATAAATATTATC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAATGATTCTGAGTGGCATTCTATATTTAATGATAAATATTATC  500

seq1  CATCAAAGATCATTGAAAAATAAATATTTGATATTAAGATAAAATTTCTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGATCATTGAAAAATAAATATTTGATATTAAGATAAAATTTCTT  550

seq1  AGGATTTAGTCTACTTCAGGTATATAATAAAAACGAAGAACCAAAAAGTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTAGTCTACTTCAGGTATATAATAAAAACGAAGAACCAAAAAGTT  600

seq1  TAGTAAATTCAGAGGGATGAAATATGAATTGACAATTTATTAAGGCTCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATTCAGAGGGATGAAATATGAATTGACAATTTATTAAGGCTCCT  650

seq1  TGTGTATGGATATTGCTGTCTGTGTTTATTTATCAGTTCTCTGACTGACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGGATATTGCTGTCTGTGTTTATTTATCAGTTCTCTGACTGACT  700

seq1  TCAGTAGGAAGTTCCTGCTTTCACACACATATAGCCTCAGAGTTCTGAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGGAAGTTCCTGCTTTCACACACATATAGCCTCAGAGTTCTGAAA  750

seq1  GCAGATAGCCATGTGGGACAGCCAATTGCTTGTGCCAGCCTCAGCTTTTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGCCATGTGGGACAGCCAATTGCTTGTGCCAGCCTCAGCTTTTA  800

seq1  ACCTTGCCCTTGCCTCTGAAGTCAAATCTCACAGAAAAGTTTTGAGAACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCCTTGCCTCTGAAGTCAAATCTCACAGAAAAGTTTTGAGAACA  850

seq1  GAAATATTTTACACTAGAGATATAAAAATACTAAAGAATTGAAAGAATTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTTACACTAGAGATATAAAAATACTAAAGAATTGAAAGAATTA  900

seq1  AGTGACAAAGTCAAGAGGCAGAGCAGATCTTTTGACAAATATACTGCCTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAAAGTCAAGAGGCAGAGCAGATCTTTTGACAAATATACTGCCTT  950

seq1  TCTGTAGAATTC  954
      ||||||||||||
seq2  TCTGTAGAATTC  962


seq1: chr13_26467753_26468860
seq2: B6Ng01-249J02.g_68_1191

seq1  GAATTCATTTTGTTTTTAGTTTTTCTCAAGCATAACCTATGGGCAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTTTTTAGTTTTTCTCAAGCATAACCTATGGGCAAAACA  50

seq1  AGGGCAGGTGGTGAATTGAGGATTCTGAGGACCACTGGGAATCATACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGTGGTGAATTGAGGATTCTGAGGACCACTGGGAATCATACTTT  100

seq1  TTTGTATGAACCTAAGTCAGACCCTTGTTTAGAGATGTTGGCCATAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGAACCTAAGTCAGACCCTTGTTTAGAGATGTTGGCCATAGGTA  150

seq1  AACAGTAGAATTGACTTAGAGAAAACAGCTAGCAAGTTATTCAAGGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGAATTGACTTAGAGAAAACAGCTAGCAAGTTATTCAAGGAATT  200

seq1  GAGTGAAAAGATTGTGTATTCTGAAATGAGAAGGTGGCAGCAGTGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAAAGATTGTGTATTCTGAAATGAGAAGGTGGCAGCAGTGAAAGA  250

seq1  GAAGAAAGGAGAAAACGGGATACTGCAATTATCAGGAAAACGATTCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGAGAAAACGGGATACTGCAATTATCAGGAAAACGATTCCTCA  300

seq1  GACATCATTTTATTTAATTTCGATGGTGAAGGAAGGGCTACATCATTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATTTTATTTAATTTCGATGGTGAAGGAAGGGCTACATCATTGGA  350

seq1  TAGACATAACCTTGGTACAAATGGATAATCAAGTGGTAACACCAGCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATAACCTTGGTACAAATGGATAATCAAGTGGTAACACCAGCCTTA  400

seq1  AGATTAACAAGGAACAAAAGTTCTAGTCTGGAAACAGATATATTTCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAACAAGGAACAAAAGTTCTAGTCTGGAAACAGATATATTTCTATC  450

seq1  ATCTTCATTTAAAAATCTGAAGAGTAGATGACAATGTAATAATGAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATTTAAAAATCTGAAGAGTAGATGACAATGTAATAATGAATTAT  500

seq1  GAAAATGGGGAGGCAGTTATTAGTGAATGGGTAGTATTAACATCATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGGGAGGCAGTTATTAGTGAATGGGTAGTATTAACATCATAAAA  550

seq1  TTAGACAGGAAACTGAGGCACCATTTATAGTGTTCTAAGATTGGAAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGGAAACTGAGGCACCATTTATAGTGTTCTAAGATTGGAAGTAG  600

seq1  CCTGGAGGATGATGAGGAGATAAGTTGGCTACTTTTGTATTTTTGTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGATGATGAGGAGATAAGTTGGCTACTTTTGTATTTTTGTGAAG  650

seq1  GTACAGCATGAACAAGGTCGTTCTCATGAAAGAAAGCATTTAACTGGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCATGAACAAGGTCGTTCTCATGAAAGAAAGCATTTAACTGGGGT  700

seq1  TTGCTTACCATTTCAGAAGCTTAGTCCATTATTGTAATGGCAGGGAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTACCATTTCAGAAGCTTAGTCCATTATTGTAATGGCAGGGAACAT  750

seq1  TGTGGGAAAAATGGCACTGGGGCAGTAGCTGTAAGCTACATTCTAATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAAAATGGCACTGGGGCAGTAGCTGTAAGCTACATTCTAATCCA  800

seq1  CAGGAGGCTGAGAGAGAAAAACACTAGGTCTGACTTGAGCTTTTGAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCTGAGAGAGAAAAACACTAGGTCTGACTTGAGCTTTTGAAATC  850

seq1  TCAAAGTCAACCCTCAGTAATACAC-TTTACCCAACAAGATCTCACCTAC  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAAAGTCAACCCTCAGTAATACACTTTTACCCAACAAGATCTCACCTAC  900

seq1  TCCAACAAGGCCACAGC-TCCTAGTCC-TCCTAATTCTTTCAAATAGT-G  946
      |||||| |||||||||| ||||||||| |||||||||||||||||||| |
seq2  TCCAAC-AGGCCACAGCTTCCTAGTCCTTCCTAATTCTTTCAAATAGTGG  949

seq1  TC-ACTCAC-TCTCTTGTGAATAAG-CCTTCAAATATATAAGCATTTGGG  993
      || |||||| ||||||||||||||| ||||||| ||||||||||||||||
seq2  TCAACTCACTTCTCTTGTGAATAAGCCCTTCAATTATATAAGCATTTGGG  999

seq1  ACT-ATTTTCATTCAAATCAC--TACATAT-GTT--AAAGACATGAAAAA  1037
      ||| ||||||||||  |||||   |||||| |||  | ||||||| ||||
seq2  ACTAATTTTCATTC-GATCACCTAACATATCGTTCAAGAGACATGGAAAA  1048

seq1  TTAGCCCAATG--TGTA-GAGACAAGAAGGATCCTCAGAGA-AACAAGAG  1083
       ||||| ||||   ||| ||||||||| | || |||||||| |||| |||
seq2  ATAGCCTAATGCTGGTAGGAGACAAGATGAAT-CTCAGAGACAACAGGAG  1097

seq1  CTG-TGCAGACAATG-CTGTTCCATAA  1108
      ||| ||||||||||| |||||| ||||
seq2  CTGTTGCAGACAATGCCTGTTCGATAA  1124


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