BAC Information

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BAC

Clone NameB6Ng01-250I13
Chromosome13 (Build37)
Map Location 20,267,730 - 20,268,887
singlet/doubletsinglet
Overlap genenone
Upstream geneTcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250I13.bB6Ng01-250I13.g
ACCGA058051GA058052
length8061,176
definitionB6Ng01-250I13.b B6Ng01-250I13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttagtattagcaggtttgggttggtgtttgtttttgtcatta
gagttttctaacatagatggtggatagtgtcatcttcaaacaggaacaat
ttgacttgttcttttccaatatttctttctcttgccctaattattctggt
tgatatctccaatactatgttgaataagaattatgacaatgggtacccta
ttccaccatataaattataacaatattagaagtcactagatgtaacattc
cacaactacttccaaacatcatgttgcatgtaaaaaatcacacaatgcca
atgtagaaaatttgcatagaacttgtaagagtagccaggtgtgggaacta
aaaacgggggccttggggaaagaggggaggggaagagacccacaccccgc
cagagttccacgtattcgctggtcagtcaggcgtgggagggctgctaact
accttccactcatccctgggtgggcactcctctatcccactcttcagggg
gtggccatgggcagccctatctaacaaccccggagctactttgctaaagc
taccagggttataggagggagggatgagggaagaggttcccaacacctgc
tggagtgcgcacagccttgatgagcagagactttcttatggtttaagagc
tttattatagaaaatgcagggggaaagagagaaggtataataagagagac
agagagacagagagacagagagagaaaggaaaggctagagagaaagagag
taagagagagaagagatgagaggataagacaaagatagatggatagagga
gaaaat
gaattcacatttaccacaatcaaggctggaagtgagatgctcagattcaa
gtaaaccacaaataaaagtattcgggtctgtctgtttgtctggtttagtc
tgtctggttcattttatctcatgccaatgtatagcccagaagctgtagtt
aactgtattagactgtattgtgtgaattggaagccattacacagaagctt
tggaaggctttcctggagacagtgtctctaccgggtgatgatgattcagt
atggagttaggaaaagtttcctgccatgttccattaacttctgccctaat
ctattcagcagttctccttctcttgagaacctgagaagacaacctgaatt
tcttatttcctaatatcccatgcatagccagtgccataagatgatggtct
gtggaggaaaaattttgggcagatacatttgcaaatatgtatattggctg
tggaaagttcccagtacacatgtgttaagagtctcaagaagtcccgcagt
gaagcctgctgtattagtcagggatctctagagtcacagaacttatggac
agtctctagatagtaaaggaatttattgatgacttacagtcggcagccca
attcccaacaattgttcagtcgcagctgtgaatggaagtccaaggatcta
ggagttactcagtctcacgcagcaagcaggcgaaggagcaagagctagag
ctagactcccttcttccaatgtccttatattgtctccagcagaaggtgta
gcccagattaaaggtgtgttccttaaactcggagattcaatcttctggaa
tcccatagccactatggctcaagatcttcaaaccaagatccagataagga
tctccaaagcctccagataagggttcactggtgagccttccatttccgga
ttgttgttcatttccaaatatttgtcaagtttgaacaaccaggaatagcc
actacaacctgctttttaaaaagaatgcctcagaaagttgtatcatgggt
tgcttgtttcaagcaaggtgtagctgttctttctgatgtatgttggatgt
gaaggcataggacatgttgccttggccctgtaatggttacttaattccaa
acactgttttgaagggtatatatagtgtataaccacgttatagtagcatc
tatttggattccatgttcaagacgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20267730_20268887
seq2: B6Ng01-250I13.g_69_1244

seq1  GAATTCACATTTA-GACAATCAAGGCTGGAAGTGAGATGCTCAGATTCAA  49
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTACCACAATCAAGGCTGGAAGTGAGATGCTCAGATTCAA  50

seq1  GTAAACCACAAATAAAAGTATTCGGGTCTGTCTGTTTGTCTGGTTTAGTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCACAAATAAAAGTATTCGGGTCTGTCTGTTTGTCTGGTTTAGTC  100

seq1  TGTCTGGTTCATTTTATCTCATGCCAATGTATAGCCCAGAAGCTGTAGTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTTCATTTTATCTCATGCCAATGTATAGCCCAGAAGCTGTAGTT  150

seq1  AACTGTATTAGACTGTATTGTGTGAATTGGAAGCCATTACACAGAAGCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATTAGACTGTATTGTGTGAATTGGAAGCCATTACACAGAAGCTT  200

seq1  TGGAAGGCTTTCCTGGAGACAGTGTCTCTACCGGGTGATGATGATTCAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCTTTCCTGGAGACAGTGTCTCTACCGGGTGATGATGATTCAGT  250

seq1  ATGGAGTTAGGAAAAGTTTCCTGCCATGTTCCATTAACTTCTGCCCTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTAGGAAAAGTTTCCTGCCATGTTCCATTAACTTCTGCCCTAAT  300

seq1  CTATTCAGCAGTTCTCCTTCTCTTGAGAACCTGAGAAGACAACCTGAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGCAGTTCTCCTTCTCTTGAGAACCTGAGAAGACAACCTGAATT  350

seq1  TCTTATTTCCTAATATCCCATGCATAGCCAGTGCCATAAGATGATGGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTCCTAATATCCCATGCATAGCCAGTGCCATAAGATGATGGTCT  400

seq1  GTGGAGGAAAAATTTTGGGCAGATACATTTGCAAATATGTATATTGGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAAAAATTTTGGGCAGATACATTTGCAAATATGTATATTGGCTG  450

seq1  TGGAAAGTTCCCAGTACACATGTGTTAAGAGTCTCAAGAAGTCCCGCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTCCCAGTACACATGTGTTAAGAGTCTCAAGAAGTCCCGCAGT  500

seq1  GAAGCCTGCTGTATTAGTCAGGGATCTCTAGAGTCACAGAACTTATGGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGCTGTATTAGTCAGGGATCTCTAGAGTCACAGAACTTATGGAC  550

seq1  AGTCTCTAGATAGTAAAGGAATTTATTGATGACTTACAGTCGGCAGCCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTAGATAGTAAAGGAATTTATTGATGACTTACAGTCGGCAGCCCA  600

seq1  ATTCCCAACAATTGTTCAGTCGCAGCTGTGAATGGAAGTCCAAGGATCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAACAATTGTTCAGTCGCAGCTGTGAATGGAAGTCCAAGGATCTA  650

seq1  GGAGTTACTCAGTCTCACGCAGCAAGCAGGCGAAGGAGCAAGAGCTAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTACTCAGTCTCACGCAGCAAGCAGGCGAAGGAGCAAGAGCTAGAG  700

seq1  CTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGGTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGGTGTA  750

seq1  GCCCAGATTAAAGGTGTGTTCCTTAAACTCGGAGATTCAATCTTCTGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATTAAAGGTGTGTTCCTTAAACTCGGAGATTCAATCTTCTGGAA  800

seq1  T-CCATAGCCACTATGGCTCAAGATCTTCAAACCAAGATCCAGATAAGGA  848
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAGCCACTATGGCTCAAGATCTTCAAACCAAGATCCAGATAAGGA  850

seq1  TCTCC-AAGCCTCCAGATAAGGG-TCACTGGTGAGCCTTCCAATTCCGGA  896
      ||||| ||||||||||||||||| |||||||||||||||||| |||||||
seq2  TCTCCAAAGCCTCCAGATAAGGGTTCACTGGTGAGCCTTCCATTTCCGGA  900

seq1  TTGTTGTTCA-TTCCAAATA-TTGTCAAGTT--GACAACCAGGAATAGCC  942
      |||||||||| ||||||||| ||||||||||   ||||||||||||||||
seq2  TTGTTGTTCATTTCCAAATATTTGTCAAGTTTGAACAACCAGGAATAGCC  950

seq1  ACTAC-ACCTGCTTTTT-AAAAGAATGCTCCAGAAAG-TGTATCATGGGT  989
      ||||| ||||||||||| ||||||||||  ||||||| ||||||||||||
seq2  ACTACAACCTGCTTTTTAAAAAGAATGCCTCAGAAAGTTGTATCATGGGT  1000

seq1  TGC-TGTTTCAGGC-AGGTGTAGCCTGTC-TTCTGATGTATG-TGGATGT  1035
      ||| ||||||| || |||||||||   || |||||||||||| |||||||
seq2  TGCTTGTTTCAAGCAAGGTGTAGCTGTTCTTTCTGATGTATGTTGGATGT  1050

seq1  G-AGGCATAGGACATGTTG-CTTGG-CCTGTAATGG-TACTTATTTCAGA  1081
      | ||||||||||||||||| ||||| |||||||||| |||||| |||  |
seq2  GAAGGCATAGGACATGTTGCCTTGGCCCTGTAATGGTTACTTAATTCCAA  1100

seq1  CCACTGTTTGGAAGGG--TATATAGTGTAT-ACCACAGTTATTAGTAGCT  1128
       |||||||| ||||||  |||||||||||| ||||| |||| ||||||| 
seq2  ACACTGTTTTGAAGGGTATATATAGTGTATAACCAC-GTTA-TAGTAGCA  1148

seq1  ACTATTT-GATTCCATGTTTTCCAAGACGCT  1158
       |||||| |||||||||||   |||||||||
seq2  TCTATTTGGATTCCATGTT---CAAGACGCT  1176