BAC Information

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BAC

Clone NameB6Ng01-251G20
Chromosome13 (Build37)
Map Location 19,043,038 - 19,175,076
singlet/doubletdoublet
Overlap geneAmph
Upstream geneLOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2, Vps41
Downstream geneLOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251G20.bB6Ng01-251G20.g
ACCGA058691GA058692
length1,1671,127
definitionB6Ng01-251G20.b B6Ng01-251G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,173,908 - 19,175,076)(19,043,038 - 19,044,167)
sequence
tccttgaagagtgtgtgaaagccagcatgtaactgacatggaactttagg
ttttccctatctccctggcaagtctacataatcaacggtcctcacacccc
tgaggttgggtgtacctcacaacataggaagtgaggaagcctgtaaggaa
gagtgcactactaagcaggctcaagatgcccttgataatgaggtttgaac
cccatgtgtctgaagagacttgcatggatatgctggagagaaggcagaga
gagtcagcaaggattcaagcccctgtggagttggaggaagcagaggcata
caagtatggacaagacaaaggtgacacagaacccatatccacccctgtat
tcaagcaagtgaagatatattctctcatgataaagccaccaatgatgtga
aaactacaccatctcatatatcatattcaccctgacctggctacatgcaa
acttgcaccaagaaatatactcctccattttgtgacaaatactatgtatt
tctataatcccgacaacaagggctcctggcattttcattaagtctctgtc
taagtctgattaaaattatacatagctaagaaaacaggttctagacaagt
tggggtatgccactgtccatcaaatgatctttgcagtgaaaaatgaaact
ggcctcacacaaaattatgtaaaactttactcattaatgctaaaaaccgc
aatattacagtcatgtttctcttagtgactgtccattacagggtgtatac
acagagaatttggaaagaagccatcttaacatagaaatggcttccaagaa
gctgatgccataggtaacaggtgggttgagacccaagtgaagaagggcga
gcctcccttttaaagtgcacaacgattttgggaaattttaacagctgaga
aatatttccacttaaatgtgtctctcaaagtttatgttttagaaatgtaa
ttctcagtacggcagtgttaaggaagtgaagtcttcaaggcagaagactg
tcagaattgctctcaggaatgggattaatgcgacgaattgagcaagccag
cttcatcaggagggcaggagtctctaagactggagtcttcactctctcct
cttgggctcaggaatggtatgatgtgtgtggtgagaaccttcgagtggga
ctttgcatctccggatg
gaattccacttttgtatattcatttcttagttgtttcttcatataaatgt
aagccagtaagactaagaagaaaatttgtgcacaatcttaattatgacct
taggtcaatttctaaaaatatgcttattcttatggctgaatagcttcctg
actatttatacctctgttttcttccatcagtccatgggacactagccaac
acccagtaataacatttggatgtatcactgggaaaagtagtctattatta
atgcgttttgcttacactttgggaatggaactgttacattttcactttgt
gaaatttcatattattactcccttttcacagtgttatatgttatattgtt
atatgttagggcaatgatactactaattttaaggcttaaaatatttctct
accttttcatttactctttaaaagtctttttatgataatgagtgtttttg
tttatgtgatgatacataaatctatcaagtgggttgtatggcttttcttt
gaggtggataagtcagaatcctgccaaatgtcaggaaactcagactgact
taaagaaaagaggaatttaatcatttataataaaactagataataactta
tatttggaccttgcatagacatctgaatgatttttactatattaatttgt
atatattaagctatatgcctatgcattcttacacatacataattatatgt
atatgtatgtatattatacatattaaataatttaattaacccaggtacct
tcactacttccatttgtagattaggaagaggttgatgacacaattaactc
atagcaaatctgctttgcacttgagcagtccagggcttgcccactgttct
cccacagtaccttatttcgattaagaccaggcaaacttgatgctttccat
ggtatcaggactcagtgtctttctacttccttctcttagtggctccaaga
aagcacatttcttttcttcaggcttttcatgatttttttttttttttttg
ggagggagggggtaacactccctggtcctcagtagatttcatctagttct
ataagagaaatgttctcatgtctaagactagacatagtcatggaaccgag
tataagccaattgctagaatagctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19173908_19175076
seq2: B6Ng01-251G20.b_50_1216 (reverse)

seq1  CATCTGGAGATGCAAAGTCCCACATCTGGAAAGTTTCTCCACCACACCAC  50
      |||| |||||||||||||||||| ||    ||| |||| ||||||| |||
seq2  CATCCGGAGATGCAAAGTCCCAC-TC---GAAGGTTCT-CACCACA-CAC  44

seq1  ATCATAACCATTTCCTGAGCCAAGGAGAGAGA-AGTGAAGAACTCAGTCT  99
      ||||| |||| |||||||||| | ||| |||| ||||||||   ||||| 
seq2  ATCAT-ACCA-TTCCTGAGCCCAAGAG-GAGAGAGTGAAGACTCCAGTC-  90

seq1  TTAGAAGACT-CTGCCCTCTTGATG-AGCCTGCTTGCTCAA-TCGTCGCA  146
      |||| ||||| |||||||| ||||| |||  |||||||||| ||||||||
seq2  TTAG-AGACTCCTGCCCTCCTGATGAAGCTGGCTTGCTCAATTCGTCGCA  139

seq1  TTAAT-CCATTCTTGAGGGC-ATTCTGACAGTC-TCTG-CTTGAAGACTT  192
      ||||| |||||| |||| || |||||||||||| |||| |||||||||||
seq2  TTAATCCCATTCCTGAGAGCAATTCTGACAGTCTTCTGCCTTGAAGACTT  189

seq1  CACTTCC-TAACACTGCCGTACTGAGAATTACATTTCTAAAACATAAACT  241
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTAACACTGCCGTACTGAGAATTACATTTCTAAAACATAAACT  239

seq1  TTGAGAGACACATTTAAGTGGAAATATTTCTCAGCTGTTAAAATTTCCCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGACACATTTAAGTGGAAATATTTCTCAGCTGTTAAAATTTCCCA  289

seq1  AAATCGTTGTGCACTTTAAAAGGAAGGCTCGCCCTTCTTCACTTGGGTCT  341
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATCGTTGTGCACTTTAAAAGGGAGGCTCGCCCTTCTTCACTTGGGTCT  339

seq1  CAACCCACCTGTTACCTATGGCATCAGCTTCTTGGAAGCCATTTCTATGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACCTGTTACCTATGGCATCAGCTTCTTGGAAGCCATTTCTATGT  389

seq1  TAAGATGGCTTCTTTCCAAATTCTCTGTGTATACACCCTGTAATGGACAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGCTTCTTTCCAAATTCTCTGTGTATACACCCTGTAATGGACAG  439

seq1  TCACTAAGAGAAACATGACTGTAATATTGCGGTTTTTAGCATTAATGAGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGAGAAACATGACTGTAATATTGCGGTTTTTAGCATTAATGAGT  489

seq1  AAAGTTTTACATAATTTTGTGTGAGGCCAGTTTCATTTTTCACTGCAAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTACATAATTTTGTGTGAGGCCAGTTTCATTTTTCACTGCAAAG  539

seq1  ATCATTTGATGGACAGTGGCATACCCCAACTTGTCTAGAACCTGTTTTCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGATGGACAGTGGCATACCCCAACTTGTCTAGAACCTGTTTTCT  589

seq1  TAGCTATGTATAATTTTAATCAGACTTAGACAGAGACTTAATGAAAATGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGTATAATTTTAATCAGACTTAGACAGAGACTTAATGAAAATGC  639

seq1  CAGGAGCCCTTGTTGTCGGGATTATAGAAATACATAGTATTTGTCACAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCCTTGTTGTCGGGATTATAGAAATACATAGTATTTGTCACAAA  689

seq1  ATGGAGGAGTATATTTCTTGGTGCAAGTTTGCATGTAGCCAGGTCAGGGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGTATATTTCTTGGTGCAAGTTTGCATGTAGCCAGGTCAGGGT  739

seq1  GAATATGATATATGAGATGGTGTAGTTTTCACATCATTGGTGGCTTTATC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGATATATGAGATGGTGTAGTTTTCACATCATTGGTGGCTTTATC  789

seq1  ATGAGAGAATATATCTTCACTTGCTTGAATACAGGGGTGGATATGGGTTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGAATATATCTTCACTTGCTTGAATACAGGGGTGGATATGGGTTC  839

seq1  TGTGTCACCTTTGTCTTGTCCATACTTGTATGCCTCTGCTTCCTCCAACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACCTTTGTCTTGTCCATACTTGTATGCCTCTGCTTCCTCCAACT  889

seq1  CCACAGGGGCTTGAATCCTTGCTGACTCTCTCTGCCTTCTCTCCAGCATA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGGCTTGAATCCTTGCTGACTCTCTCTGCCTTCTCTCCAGCATA  939

seq1  TCCATGCAAGTCTCTTCAGACACATGGGGTTCAAACCTCATTATCAAGGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCAAGTCTCTTCAGACACATGGGGTTCAAACCTCATTATCAAGGG  989

seq1  CATCTTGAGCCTGCTTAGTAGTGCACTCTTCCTTACAGGCTTCCTCACTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGAGCCTGCTTAGTAGTGCACTCTTCCTTACAGGCTTCCTCACTT  1039

seq1  CCTATGTTGTGAGGTACACCCAACCTCAGGGGTGTGAGGACCGTTGATTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTGTGAGGTACACCCAACCTCAGGGGTGTGAGGACCGTTGATTA  1089

seq1  TGTAGACTTGCCAGGGAGATAGGGAAAACCTAAAGTTCCATGTCAGTTAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTTGCCAGGGAGATAGGGAAAACCTAAAGTTCCATGTCAGTTAC  1139

seq1  ATGCTGGCTTTCACACACTCTTCAAGGA  1169
      ||||||||||||||||||||||||||||
seq2  ATGCTGGCTTTCACACACTCTTCAAGGA  1167

seq1: chr13_19043038_19044167
seq2: B6Ng01-251G20.g_66_1192

seq1  GAATTCCACTTTTGTATATTCATTTCTTAGTTGTTTCTTCATATAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTTGTATATTCATTTCTTAGTTGTTTCTTCATATAAATGT  50

seq1  AAGCCAGTAAGACTAAGAAGAAAATTTGTGCACAATCTTAATTATGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTAAGACTAAGAAGAAAATTTGTGCACAATCTTAATTATGACCT  100

seq1  TAGGTCAATTTCTAAAAATATGCTTATTCTTATGGCTGAATAGCTTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAATTTCTAAAAATATGCTTATTCTTATGGCTGAATAGCTTCCTG  150

seq1  ACTATTTATACCTCTGTTTTCTTCCATCAGTCCATGGGACACTAGCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTATACCTCTGTTTTCTTCCATCAGTCCATGGGACACTAGCCAAC  200

seq1  ACCCAGTAATAACATTTGGATGTATCACTGGGAAAAGTAGTCTATTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTAATAACATTTGGATGTATCACTGGGAAAAGTAGTCTATTATTA  250

seq1  ATGCGTTTTGCTTACACTTTGGGAATGGAACTGTTACATTTTCACTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTTTTGCTTACACTTTGGGAATGGAACTGTTACATTTTCACTTTGT  300

seq1  GAAATTTCATATTATTACTCCCTTTTCACAGTGTTATATGTTATATTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCATATTATTACTCCCTTTTCACAGTGTTATATGTTATATTGTT  350

seq1  ATATGTTAGGGCAATGATACTACTAATTTTAAGGCTTAAAATATTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTAGGGCAATGATACTACTAATTTTAAGGCTTAAAATATTTCTCT  400

seq1  ACCTTTTCATTTACTCTTTAAAAGTCTTTTTATGATAATGAGTGTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCATTTACTCTTTAAAAGTCTTTTTATGATAATGAGTGTTTTTG  450

seq1  TTTATGTGATGATACATAAATCTATCAAGTGGGTTGTATGGCTTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGATGATACATAAATCTATCAAGTGGGTTGTATGGCTTTTCTTT  500

seq1  GAGGTGGATAAGTCAGAATCCTGCCAAATGTCAGGAAACTCAGACTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGATAAGTCAGAATCCTGCCAAATGTCAGGAAACTCAGACTGACT  550

seq1  TAAAGAAAAGAGGAATTTAATCATTTATAATAAAACTAGATAATAACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAGAGGAATTTAATCATTTATAATAAAACTAGATAATAACTTA  600

seq1  TATTTGGACCTTGCATAGACATCTGAATGATTTTTACTATATTAATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGACCTTGCATAGACATCTGAATGATTTTTACTATATTAATTTGT  650

seq1  ATATATTAAGCTATATGCCTATGCATTCTTACACATACATAATTATATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAGCTATATGCCTATGCATTCTTACACATACATAATTATATGT  700

seq1  ATATGTATGTATATTATACATATTAAATAATTTAATTAACCCAGGTACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGTATATTATACATATTAAATAATTTAATTAACCCAGGTACCT  750

seq1  TCACTACTTCCATTTGTAGATTAGGAAGAGGTTGATGACACAATTAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACTTCCATTTGTAGATTAGGAAGAGGTTGATGACACAATTAACTC  800

seq1  ATAGCAAATCTGCTTTGCACTTGAGCAGTCCAGGGCTTGCCCACTGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAATCTGCTTTGCACTTGAGCAGTCCAGGGCTTGCCCACTGTTCT  850

seq1  CCCACAGTACCTTATTTCGATTAAGACCAGGCAAACTTGATGC-TTCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCACAGTACCTTATTTCGATTAAGACCAGGCAAACTTGATGCTTTCCAT  900

seq1  GGTATCAGGACTCAGGTGTCTTTCTACTTCCTTCTCTTAGTGGCTCCAAG  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTATCAGGACTCA-GTGTCTTTCTACTTCCTTCTCTTAGTGGCTCCAAG  949

seq1  AAAGCACATTTCTTTTCTTCAGGCTTTTCATTGATTTTTTTTTTTTTTT-  998
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  AAAGCACATTTCTTTTCTTCAGGCTTTTCA-TGATTTTTTTTTTTTTTTT  998

seq1  --GGA-GGAGGGGGTAACACTCCCTGG-CCCCAGTAGATTTTTCATCTAT  1044
        ||| ||||||||||||||||||||| || |||||||  ||||||||| 
seq2  TGGGAGGGAGGGGGTAACACTCCCTGGTCCTCAGTAGA--TTTCATCTAG  1046

seq1  TTCTATAAGAGAAAATGTCTCATGTCTAAAGACTAAGACCATAGTTCATT  1094
      ||||||||||||||   |||||||||| |||||| ||| ||||| ||| |
seq2  TTCTATAAGAGAAATGTTCTCATGTCT-AAGACT-AGA-CATAG-TCA-T  1091

seq1  GGACCCGAGTTATAAGCC-ATTGCTAGAATAGCTGGG  1130
      ||| ||||| |||||||| ||||||||||||||||||
seq2  GGAACCGAG-TATAAGCCAATTGCTAGAATAGCTGGG  1127