BAC Information

Click to search

BAC

Clone NameB6Ng01-254C20
Chromosome13 (Build37)
Map Location 25,540,158 - 25,705,868
singlet/doubletdoublet
Overlap geneTpi-rs8, LOC214973
Upstream geneCmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
Downstream geneLOC666221, LOC100042180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254C20.bB6Ng01-254C20.g
ACCGA060715GA060716
length1,0531,041
definitionB6Ng01-254C20.b B6Ng01-254C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,704,824 - 25,705,868)(25,540,158 - 25,541,186)
sequence
ggaattcagagacctctagagaccacatatccaagtatactcacgtgtat
ctgcaaccccagtctagtggaggaaatagagacagaaggagtcttggagc
ctattggccagccagtctagtctacagataagcgccaaatgcagtgaaga
gatcctgactgaaaaaaaacaagatgaggagtgattgaaggaaacatctg
atgtcaatctctgaccaccaagtacatatgcaataccacatgcgtgtgtg
aatgcccacgcatgtgcacgtgcacacacacacacaccacaaaataaaag
tatgcacaatctatacatgagtgcaaagcaaagaaaccagacagaattca
aaaaccaaaataattaataattaaaaacaagagaaagtagaggctatggt
ggttactgctgtgtgttctgttaacttggcacaaatagagtcacttgaga
agagagaatcttactggagaaaatgactccattaaagtgacctacagtaa
gtagagcctgtgggaaatcttctttctgaatgaatgatgtaggaaggttc
agattcacccctgggaaggtagttttgtgttttataaagaagcaaatgta
gcaagggataagcgatgggagcaagcaagtacgcaacattcctctactct
actacctctgcttcagtgcctgcctccaggttcctgccctggctttcctt
gatgataaactgcaacctgtaggctaaataacctccttcctctccaaatg
gctcatgttcggtgtttatcacagcaacaggaagcaaacgaaggcagaag
caaaaacatctcattcaaaatcttatttttctttctcaacaaaataaaaa
ataaacaaaggtaattgttgaagaagagagatgtacagagtatatatata
tatatatatatatgtatatatatatatgtatatatatatatacacacata
tatatatactaattggggagaatggatatacattttataaatagttaaat
agaaaagaattgctaaagaattgaagaagaagatatttttatcgacaaga
aat
gaattctttgtttagctctgtaccccattttttaatagggttatttggct
ttctggagtctaactttttgagtttcactcctgagttctttgacattttt
atgcacatatatcaccatactttgttctaatttgcttctaccctctctag
tccttgttaatacatactctaaatataatatttacatattatttttagat
acagactgatatcatttgttatttgagtaagaaatgccccccataagcat
atacatttaaacacttgatccccagctgtgcctcagtttggaagggttag
aatactttatgacccggaactttgctcaaaggggtgtttatattctcact
gactttcttcagttttctctgtctgcttctgttggacagagaaaatgtgc
ttagcctacatcttgttctaggtgcctgaggccaggcctccctaccattc
tggactctgcctttggaagtacaataattataaactcttctatgatttgt
gtagtcatgatcttttatgatagtaacagaaaagtaacggatataatgac
aaatgcaaagatatgtattgtgtatttaacaaatacgtatagtgtagtgg
ttggttctgggaatgggagaggataataagttcgtagaagagctcaattt
gttccatagtattttcaatctttaatgaaagatctgaattaaacataacc
aagtatttgtgttaactgtggtagtggctacacatatatttgtttttact
ttggaaatattctggaaaagggttgtaaagaaattaacagatttttcatg
tatatacagaaccccacagctgggtgaaagttattattactactactatt
accacgacttgtgcatgctgagcaggccggcattctgccattggggctcc
aacccttagcacttagctcttccttttctaattgcttaagctggccattc
tagaattcaagtgtgtgttttgtacggggtcttttaaagcccatagcctg
ccgtatattgaagtacgaaataatggcagatgtgcctcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25704824_25705868
seq2: B6Ng01-254C20.b_50_1101 (reverse)

seq1  ATTTCTTGTCTAT-AAAATATCTCCTTC-TCAATTCCTTAGCAAT--CTT  46
      |||||||||| || ||||||||| |||| ||||||| ||||||||   ||
seq2  ATTTCTTGTCGATAAAAATATCTTCTTCTTCAATTCTTTAGCAATTCTTT  50

seq1  TCTATTTAACTATTTATAAAATGTATATCTA-TCTCCC--AATAGTATAT  93
      ||||||||||||||||||||||||||||| | ||||||  | ||||||||
seq2  TCTATTTAACTATTTATAAAATGTATATCCATTCTCCCCAATTAGTATAT  100

seq1  ATATATGTGTGTATATATATATATACATATATATATATACATATATATAT  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTGTATATATATATATACATATATATATATACATATATATAT  150

seq1  ATATATATATATACTCTGTACATCTCTCTTCTTCAACAATTACCTTTGTT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATACTCTGTACATCTCTCTTCTTCAACAATTACCTTTGTT  200

seq1  TATTTTTTATTTTGTTGAGAAAGAAAAATAAGATTTTGAATGAGATGTTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTATTTTGTTGAGAAAGAAAAATAAGATTTTGAATGAGATGTTT  250

seq1  TTGCTTCTGCCTTCGTTTGCTTCCTGTTGCTGTGATAAACACCGAACATG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTGCCTTCGTTTGCTTCCTGTTGCTGTGATAAACACCGAACATG  300

seq1  AGCCATTTGGAGAGGAAGGAGGTTATTTAGCCTACAGGTTGCAGTTTATC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTGGAGAGGAAGGAGGTTATTTAGCCTACAGGTTGCAGTTTATC  350

seq1  ATCAAGGAAAGCCAGGGCAGGAACCTGGAGGCAGGCACTGAAGCAGAGGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAAAGCCAGGGCAGGAACCTGGAGGCAGGCACTGAAGCAGAGGT  400

seq1  AGTAGAGTAGAGGAATGTTGCGTACTTGCTTGCTCCCATCGCTTATCCCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGTAGAGGAATGTTGCGTACTTGCTTGCTCCCATCGCTTATCCCT  450

seq1  TGCTACATTTGCTTCTTTATAAAACACAAAACTACCTTCCCAGGGGTGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACATTTGCTTCTTTATAAAACACAAAACTACCTTCCCAGGGGTGAA  500

seq1  TCTGAACCTTCCTACATCATTCATTCAGAAAGAAGATTTCCCACAGGCTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCTTCCTACATCATTCATTCAGAAAGAAGATTTCCCACAGGCTC  550

seq1  TACTTACTGTAGGTCACTTTAATGGAGTCATTTTCTCCAGTAAGATTCTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTGTAGGTCACTTTAATGGAGTCATTTTCTCCAGTAAGATTCTC  600

seq1  TCTTCTCAAGTGACTCTATTTGTGCCAAGTTAACAGAACACACAGCAGTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCAAGTGACTCTATTTGTGCCAAGTTAACAGAACACACAGCAGTA  650

seq1  ACCACCATAGCCTCTACTTTCTCTTGTTTTTAATTATTAATTATTTTGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATAGCCTCTACTTTCTCTTGTTTTTAATTATTAATTATTTTGGT  700

seq1  TTTTGAATTCTGTCTGGTTTCTTTGCTTTGCACTCATGTATAGATTGTGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTCTGTCTGGTTTCTTTGCTTTGCACTCATGTATAGATTGTGC  750

seq1  ATACTTTTATTTTGTGGTGTGTGTGTGTGTGCACGTGCACATGCGTGGGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTATTTTGTGGTGTGTGTGTGTGTGCACGTGCACATGCGTGGGC  800

seq1  ATTCACACACGCATGTGGTATTGCATATGTACTTGGTGGTCAGAGATTGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACACGCATGTGGTATTGCATATGTACTTGGTGGTCAGAGATTGA  850

seq1  CATCAGATGTTTCCTTCAATCACTCCTCATCTTGTTTTTTTTCAGTCAGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATGTTTCCTTCAATCACTCCTCATCTTGTTTTTTTTCAGTCAGG  900

seq1  ATCTCTTCACTGCATTTGGCGCTTATCTGTAGACTAGACTGGCTGGCCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCACTGCATTTGGCGCTTATCTGTAGACTAGACTGGCTGGCCAA  950

seq1  TAGGCTCCAAGACTCCTTCTGTCTCTATTTCCTCCACTAGACTGGGGTTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCCAAGACTCCTTCTGTCTCTATTTCCTCCACTAGACTGGGGTTG  1000

seq1  CAGATACACGTGAGTATACTTGGATATGTGGTCTCTAGAGGTCTCTGAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACACGTGAGTATACTTGGATATGTGGTCTCTAGAGGTCTCTGAAT  1050

seq1  TC  1045
      ||
seq2  TC  1052

seq1: chr13_25540158_25541186
seq2: B6Ng01-254C20.g_67_1107

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTAATAGGGTTATTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTAATAGGGTTATTTGGCT  50

seq1  TTCTGGAGTCTAACTTTTTGAGTTTCACTCCTGAGTTCTTTGACATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCTAACTTTTTGAGTTTCACTCCTGAGTTCTTTGACATTTTT  100

seq1  ATGCACATATATCACCATACTTTGTTCTAATTTGCTTCTACCCTCTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATATATCACCATACTTTGTTCTAATTTGCTTCTACCCTCTCTAG  150

seq1  TCCTTGTTAATACATACTCTAAATATAATATTTACATATTATTTTTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTAATACATACTCTAAATATAATATTTACATATTATTTTTAGAT  200

seq1  ACAGACTGATATCATTTGTTATTTGAGTAAGAAATGCCCCCCATAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGATATCATTTGTTATTTGAGTAAGAAATGCCCCCCATAAGCAT  250

seq1  ATACATTTAAACACTTGATCCCCAGCTGTGCCTCAGTTTGGAAGGGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTAAACACTTGATCCCCAGCTGTGCCTCAGTTTGGAAGGGTTAG  300

seq1  AATACTTTATGACCCGGAACTTTGCTCAAAGGGGTGTTTATATTCTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTATGACCCGGAACTTTGCTCAAAGGGGTGTTTATATTCTCACT  350

seq1  GACTTTCTTCAGTTTTCTCTGTCTGCTTCTGTTGGACAGAGAAAATGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTTCAGTTTTCTCTGTCTGCTTCTGTTGGACAGAGAAAATGTGC  400

seq1  TTAGCCTACATCTTGTTCTAGGTGCCTGAGGCCAGGCCTCCCTACCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTACATCTTGTTCTAGGTGCCTGAGGCCAGGCCTCCCTACCATTC  450

seq1  TGGACTCTGCCTTTGGAAGTACAATAATTATAAACTCTTCTATGATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTGCCTTTGGAAGTACAATAATTATAAACTCTTCTATGATTTGT  500

seq1  GTAGTCATGATCTTTTATGATAGTAACAGAAAAGTAACGGATATAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCATGATCTTTTATGATAGTAACAGAAAAGTAACGGATATAATGAC  550

seq1  AAATGCAAAGATATGTATTGTGTATTTAACAAATACGTATAGTGTAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAAGATATGTATTGTGTATTTAACAAATACGTATAGTGTAGTGG  600

seq1  TTGGTTCTGGGAATGGGAGAGGATAATAAGTTCGTAGAAGAGCTCAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTGGGAATGGGAGAGGATAATAAGTTCGTAGAAGAGCTCAATTT  650

seq1  GTTCCATAGTATTTTCAATCTTTAATGAAAGATCTGAATTAAACATAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATAGTATTTTCAATCTTTAATGAAAGATCTGAATTAAACATAACC  700

seq1  AAGTATTTGTGTTAACTGTGGTAGTGGCTACACATATATTTG-TTTTACT  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGTATTTGTGTTAACTGTGGTAGTGGCTACACATATATTTGTTTTTACT  750

seq1  TTGGAAATATTCTGGAAAAGGGTTGTAAAGAAATTAACAGA-TTTTCATG  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGGAAATATTCTGGAAAAGGGTTGTAAAGAAATTAACAGATTTTTCATG  800

seq1  TATATACAGAACCCCACAGCTGGGTG-AAGTTATTATTACTACTACTATT  847
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATATACAGAACCCCACAGCTGGGTGAAAGTTATTATTACTACTACTATT  850

seq1  ACCACGACTTGTGCATGCTGAGCAGGCCGGCATTCTGCCATT-GGGCTCC  896
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACCACGACTTGTGCATGCTGAGCAGGCCGGCATTCTGCCATTGGGGCTCC  900

seq1  AACCC-TAGCACTTAGCTCTTCC-TTTCTAATTGC-TAAGCTGGCCATTC  943
      ||||| ||||||||||||||||| ||||||||||| ||||||||||||||
seq2  AACCCTTAGCACTTAGCTCTTCCTTTTCTAATTGCTTAAGCTGGCCATTC  950

seq1  TAG-ATTC-AGTGTGTGTTTTGTAC-GGGTCTTTAAAAG-CCATAG-CTG  988
      ||| |||| |||||||||||||||| |||||||| |||| |||||| |||
seq2  TAGAATTCAAGTGTGTGTTTTGTACGGGGTCTTTTAAAGCCCATAGCCTG  1000

seq1  CAGTAATTATGAATTAAGAAATAATGGCAGATGTG-CTCACT  1029
      | || ||  |||| || |||||||||||||||||| ||||||
seq2  CCGT-ATATTGAAGTACGAAATAATGGCAGATGTGCCTCACT  1041