BAC Information

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BAC

Clone NameB6Ng01-255B09
Chromosome13 (Build37)
Map Location 25,668,186 - 25,766,301
singlet/doubletdoublet
Overlap geneLOC214973
Upstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
Downstream geneLOC666221, LOC100042180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255B09.bB6Ng01-255B09.g
ACCGA061381GA061382
length1,1091,141
definitionB6Ng01-255B09.b B6Ng01-255B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,765,185 - 25,766,301)(25,668,186 - 25,668,904)
sequence
gaattctaatgttttgacaatctgacatgattaatttagatacacaaact
gtgtgtatactgaggaggtcccaaacaccacagtaaaagctactgagcag
cagtgcttgacagaagcctgaccaagtccttagataaagcttgcctctgt
agaggaaggggatgctagtagacaggataagagaacaaaagtatcattga
gaacacccatacccagctacagaaactgaaaaatgtggatagaaacacaa
tataaacaaaaattcaaactgtataactgaagactgatttataaaacaat
gaagtcttttaattataccatctgataggatttttatgtcaggaaataga
tcataccaatcacattgtaaggtcctttaaagatgccttgtgggaaatcc
ataaactccacttgtatataagcaatacaaagcgtttcatggctacagat
cacttactttccctagaccctcaaatatatggtaagtaatacatattcat
atttaacatgctttatacacacatcagttcatatacatattattcaacat
gcacacataatctatataaaacactccatctattctctccaggcctttca
ctgttctatgtcttattgctgagtaatatacaatgtctgaatccccaaat
ttgttttcttaatcagttgtgggtcattttagtcatttctcgttgggaat
tatataggtaaagaatctgtcaatattcaaatatcaatcttgttttgttg
ttctttcttggataaatatctaggaagagaattactgttgcctggtttta
aaaaaaatgtctttcagagttctttgtgggcccagtatctgcacctgctt
gaacaagttagcctctcccctgacctagagatgatcaatactgcatctct
cttcactgtcaccttgccagtgactgtgtgttgatgctcatggtggtcac
atgatactgaactcttgtcacctgtttcttgagcagttccttcatttcta
aagagtttccttttctattggatccttgcttttttctactggactgtgaa
cgttcctgtcagaaatatatgtcagaaagtcctctccagatctgtgctca
ttttgtctt
gaattcaagcaggtcagaaagcaggagctgatgcagaggccatggaggga
tgtttcttactggcttgcttcccctggcttgctcagcttgctctcttata
gaacccaagactaccagctcagagatggcaccacccacaaggggacctcc
tcccttgatcattaattgagaaaatgccttacagctggatctcgtggagg
catttccccaactgaagctcctttctctgtgataactccagcctgtgtca
agttgacacaaactagccagtacactaaccctgccctcagtactgtaagg
agttatacaagctgctaagggagaaaaacaattgataaccctatccaact
ttaatgcctaaaaccacagcaattaccagaatgacattacaatagtgata
gttgtgcatgggttagtcaaaaactgtacaattggaattaagccacattc
aacatgaggaagttcatgcctggtattttaaatctagccaaatactcttg
actggtgaggctacaaactctagaagagaaccttctgttttcctaaacca
gttgaatacctaaccaccttctaaaatcttatccttttacccacagataa
gtgtagatctcaccccttatcaaaaagcttccttttgcagtagatgaaga
atgttacagaaagacacaactcaaaaaaatgaaaagaacaactaaccatg
gattgcttggccctaggaaacacatcttcaatgtaaaccctaaatgcaag
gctcagagaacatcactgatgagtatggagaaagattgcaagagccaaat
gagcaaaatatttgctgtgagatggagtcttttgtatatgttgagatgct
caacccatgaaatctcaagaatttggttgcctaaataaaagacttgaaaa
gcagtgccaactgacatagcagagtgaataggcatatggggtaacctcac
acacatgaaacatcttcagcagatatttttatactttacttgataacatc
ttttagtacatgatatttagaataaataatgctgattcacatttactttt
ttgacagctttattattttattatttgtctaatgcagcacttaaagaaac
cctcagtgacatagaatatatgatattgtgacttgatcgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25765185_25766301
seq2: B6Ng01-255B09.b_47_1155 (reverse)

seq1  AAGACAAAAATGAGCAACAGATCTGGAGAGAACTTTCCTGACATATATTT  50
      ||||| ||||||||| |||||||||||||| ||||| |||||||||||||
seq2  AAGAC-AAAATGAGC-ACAGATCTGGAGAGGACTTT-CTGACATATATTT  47

seq1  CTGACAAGGAACGTTCACAGTCCAGTAAGAAAAAAGCAAAGGATCCAATA  100
      ||||| |||||||||||||||||||| |||||||||| ||||||||||||
seq2  CTGAC-AGGAACGTTCACAGTCCAGT-AGAAAAAAGC-AAGGATCCAATA  94

seq1  AGAAAAAGGAAACTCTTTAGAAATGAAGGAACTGCTCAAGAAACAGGTGA  150
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --GAAAAGGAAACTCTTTAGAAATGAAGGAACTGCTCAAGAAACAGGTGA  142

seq1  CAAGAGTTCAGTATCATGTGACCACCATGAGCATCAACACACAGTCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTCAGTATCATGTGACCACCATGAGCATCAACACACAGTCACTG  192

seq1  GCAAGGTGACAGTGAAGAGAGATGCAGTATTGATCATCTCTAGGTCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTGACAGTGAAGAGAGATGCAGTATTGATCATCTCTAGGTCAGGG  242

seq1  GAGAGGCTAACTTGTTCAAGCAGGTGCAGATACTGGGCCCACAAAGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTAACTTGTTCAAGCAGGTGCAGATACTGGGCCCACAAAGAACT  292

seq1  CTGAAAGACATTTTTTTTAAAACCAGGCAACAGTAATTCTCTTCCTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGACATTTTTTTTAAAACCAGGCAACAGTAATTCTCTTCCTAGAT  342

seq1  ATTTATCCAAGAAAGAACAACAAAACAAGATTGATATTTGAATATTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCAAGAAAGAACAACAAAACAAGATTGATATTTGAATATTGACA  392

seq1  GATTCTTTACCTATATAATTCCCAACGAGAAATGACTAAAATGACCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTACCTATATAATTCCCAACGAGAAATGACTAAAATGACCCACA  442

seq1  ACTGATTAAGAAAACAAATTTGGGGATTCAGACATTGTATATTACTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTAAGAAAACAAATTTGGGGATTCAGACATTGTATATTACTCAGC  492

seq1  AATAAGACATAGAACAGTGAAAGGCCTGGAGAGAATAGATGGAGTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACATAGAACAGTGAAAGGCCTGGAGAGAATAGATGGAGTGTTTT  542

seq1  ATATAGATTATGTGTGCATGTTGAATAATATGTATATGAACTGATGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATTATGTGTGCATGTTGAATAATATGTATATGAACTGATGTGTG  592

seq1  TATAAAGCATGTTAAATATGAATATGTATTACTTACCATATATTTGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCATGTTAAATATGAATATGTATTACTTACCATATATTTGAGGG  642

seq1  TCTAGGGAAAGTAAGTGATCTGTAGCCATGAAACGCTTTGTATTGCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGAAAGTAAGTGATCTGTAGCCATGAAACGCTTTGTATTGCTTAT  692

seq1  ATACAAGTGGAGTTTATGGATTTCCCACAAGGCATCTTTAAAGGACCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTGGAGTTTATGGATTTCCCACAAGGCATCTTTAAAGGACCTTA  742

seq1  CAATGTGATTGGTATGATCTATTTCCTGACATAAAAATCCTATCAGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGATTGGTATGATCTATTTCCTGACATAAAAATCCTATCAGATGG  792

seq1  TATAATTAAAAGACTTCATTGTTTTATAAATCAGTCTTCAGTTATACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAAAAGACTTCATTGTTTTATAAATCAGTCTTCAGTTATACAGT  842

seq1  TTGAATTTTTGTTTATATTGTGTTTCTATCCACATTTTTCAGTTTCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTTTGTTTATATTGTGTTTCTATCCACATTTTTCAGTTTCTGTA  892

seq1  GCTGGGTATGGGTGTTCTCAATGATACTTTTGTTCTCTTATCCTGTCTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTATGGGTGTTCTCAATGATACTTTTGTTCTCTTATCCTGTCTAC  942

seq1  TAGCATCCCCTTCCTCTACAGAGGCAAGCTTTATCTAAGGACTTGGTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCCCCTTCCTCTACAGAGGCAAGCTTTATCTAAGGACTTGGTCAG  992

seq1  GCTTCTGTCAAGCACTGCTGCTCAGTAGCTTTTACTGTGGTGTTTGGGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTCAAGCACTGCTGCTCAGTAGCTTTTACTGTGGTGTTTGGGAC  1042

seq1  CTCCTCAGTATACACACAGTTTGTGTATCTAAATTAATCATGTCAGATTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGTATACACACAGTTTGTGTATCTAAATTAATCATGTCAGATTG  1092

seq1  TCAAAACATTAGAATTC  1117
      |||||||||||||||||
seq2  TCAAAACATTAGAATTC  1109

seq1: chr13_25668186_25668904
seq2: B6Ng01-255B09.g_500_1207

seq1  GGAATTAAGCCACATTCAACATGAGGAAGTTCATGCCTGGTATTTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAAGCCACATTCAACATGAGGAAGTTCATGCCTGGTATTTTAAAT  50

seq1  CTAGCCAAATACTCTTGACTGGTGAGGCTACAAACTCTAGAAGAGAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAAATACTCTTGACTGGTGAGGCTACAAACTCTAGAAGAGAACCT  100

seq1  TCTGTTTTCCTAAACCAGTTGAATACCTAACCACCTTCTAAAATCTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCCTAAACCAGTTGAATACCTAACCACCTTCTAAAATCTTATC  150

seq1  CTTTTACCCACAGATAAGTGTAGATCTCACCCCTTATCAAAAAGCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCCACAGATAAGTGTAGATCTCACCCCTTATCAAAAAGCTTCCT  200

seq1  TTTGCAGTAGATGAAGAATGTTACAGAAAGACACAACTCAAAAAAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTAGATGAAGAATGTTACAGAAAGACACAACTCAAAAAAATGAA  250

seq1  AAGAACAACTAACCATGGATTGCTTGGCCCTAGGAAACACATCTTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAACTAACCATGGATTGCTTGGCCCTAGGAAACACATCTTCAATG  300

seq1  TAAACCCTAAATGCAAGGCTCAGAGAACATCACTGATGAGTATGGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTAAATGCAAGGCTCAGAGAACATCACTGATGAGTATGGAGAAA  350

seq1  GATTGCAAGAGCCAAATGAGCAAAATATTTGCTGTGAGATGGAGTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAAGAGCCAAATGAGCAAAATATTTGCTGTGAGATGGAGTCTTTT  400

seq1  GTATATGTTGAGATGCTCAACCCATGAAATCTCAAGAATTTGGTTGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTTGAGATGCTCAACCCATGAAATCTCAAGAATTTGGTTGCCTA  450

seq1  AATAAAAGACTTGAAAAGCAGTGCCAACTGACATAGCAGAGTGAATAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGACTTGAAAAGCAGTGCCAACTGACATAGCAGAGTGAATAGGC  500

seq1  ATATGGGGTAACCTCACAACACATGAAAACATCTTCAGCAAGAATATTTT  550
      ||||||||||||||||| ||||||| ||||||||||||| |||   ||||
seq2  ATATGGGGTAACCTCAC-ACACATG-AAACATCTTCAGC-AGATATTTTT  547

seq1  ATACTTTACTTGATAAACATCTTTTAGTAACCATGATTAATTTAGAATAA  600
      |||||||||||||| ||||||||||||||  ||||||  |||||||||||
seq2  ATACTTTACTTGAT-AACATCTTTTAGTA--CATGAT--ATTTAGAATAA  592

seq1  ATAATGCTGATTCACATTTACTTTTTTGACAGCTTTATTAATCTATTATT  650
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  ATAATGCTGATTCACATTTACTTTTTTGACAGCTTTATTATTTTATTATT  642

seq1  TGTCCTAAATGCAGCACTTAAAAGGAAACACTCAGTGACATAGAATATAG  700
      ||||   |||||||||||||||  ||||| ||||||||||||||||||| 
seq2  TGTC--TAATGCAGCACTTAAA--GAAACCCTCAGTGACATAGAATATAT  688

seq1  GATA-TGTGACCTGATCGGA  719
      |||| |||||| ||||||||
seq2  GATATTGTGACTTGATCGGA  708