BAC Information

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BAC

Clone NameB6Ng01-257J19
Chromosome13 (Build37)
Map Location 15,709,220 - 15,710,388
singlet/doubletsinglet
Overlap geneGli3
Upstream genePsma2, AW209491, EG665099, LOC670994, EG625121
Downstream geneLOC665157, Inhba, LOC625181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257J19.bB6Ng01-257J19.g
ACCGA063265GA063266
length1,1761,199
definitionB6Ng01-257J19.b B6Ng01-257J19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcctcatcttatgagttgttcagaatgcatgtgtccaactga
tacctggaatgtctctttctcaggttgtaataatccccaattctatgtaa
agttaaacacagtgttttagaaaaatcaccaaagtccacttagcatattg
ctgagcccatctggtgcctctgtgatatccctgagcccggacacacactg
cagaagagaacgggaaacgtgtccagtcctctctttgttccctggcttga
gctgtttacaccagggctctataaccctgtggtcacactgttctatgctg
tgggccttgataaagccctctagactacatgttactactgggttttaaaa
cttctttaaaaatggagacagttgttcagttatatcttactatactcaga
ttttcaagtgattttttttttttacagccacaaagaatgtgctactgcat
tttgagtttgtgaacattttgagtttgtgtgtacatttgagtgtgtgcat
tttgagtgtttgtgagttttgagtgtgtgtatgttttaagtgctggaagt
tacttgatcatgtttcatttcaaaagtaggcatgatgtatttttagaaac
tcaaattataaagacttttgaattctagtatgatttcattcacattcttg
tggggtttccagggtgtgttgatatctattctgtatgtaaaaactctttg
agccaagtttttctcattcatgaaccagtatgaattagattttggacttt
cctgtagctttctactgaggtctacaaattcattttccaaagctgagtcc
ttagttactaatccattgcaataattcaggccccagtgatctgatcttct
tgctgtgaaactgagagcagtgttggcattgtgcagtggatgcgaatggt
acgtcactaagctgcatctttagacagtatgcagaacctgctctgcatcc
ccttccactttactaatgccttttagaaaaactgctttatcttttacgtc
cagtgagaagtgagcactctccttagttcttttcccttggagtcaaggtg
gcttacagggaagcctgcccgaattcagtgcatgcttatcagaaggggat
ctatgccttccacaaaaactagcctgctccagctgctcagaaagaggagt
agtgatcagagcttaccatacagctt

gaattcaatacaagcctgcctgctgttccacacagcattgcctctggcca
aagaactcacctgagtcagacaaagtcaggctagtactatacatagtagc
cttgtcctcctgtatcacttaacaataaagataatccctcatagatgtac
ttgtaggtcactctgatctaggcaagtcttcaacccaggttttcctctcc
ggtgactccaggctgtataaagtgaacaattagaattgtaagacaaacat
atacaccccatatcatgccacactctcttttatgtaaatccacttgtcta
ctttttgttgttgttgttgtattctatgctttagatgatttttttttaat
gttttatcagttccaaaagtttggaaagaattcccctatgttatctccaa
gctctttcctaatttcagctcatagaatcttagatttatgtctttggtcc
attttgacttgtgtcaaatgcaggaaattaagatgggcttgtgtcttatt
ctgaggcataagaaggttctctatttagtactatattaattaattttctg
ttgctgtgataaaatctcatggccaaggcaacttatagaaggaagagttt
gagcttatggttccagaaaaataaaagttcatcataggcaggagccatgg
acagcaagcaagcatggcagtcagaaaaagaagccgagagttcacaccct
cacacacaagcacagagaaaaacaagtaaactagaaatagtatgggttac
atcatgtcaaagcccagccccactgatatgcttcctccaacaaggacaca
ctgccatctctcacaaagagtactaccaagtaagaacaaacactatagcc
tatggaagacttctcattcaaaccatcacaggtatgatgctagctataga
cctgattatgtggtctttaggtacattcctctgtgtctaatttcttcaag
ttttgatcatgaaagaataataatttagacaaatgttctgatctggtgga
gatgtcacgtggtgtgctgacatgtgttgatgtgactgtcatcttttttt
atattgtaatagatggacattctggcatcttctggataaattttacattc
gaatgaacagctctaaatgttcagctgccagtgtttgcctgagaattaaa
tcctcctctcttcaatggcagacatctacactgtgatgggaaaatactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_15709220_15710388
seq2: B6Ng01-257J19.b_45_1220

seq1  GAATTCTTTCCTCATCTTATGAGTTGTTCAGAATGCATGTGTCCAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTCATCTTATGAGTTGTTCAGAATGCATGTGTCCAACTGA  50

seq1  TACCTGGAATGTCTCTTTCTCAGGTTGTAATAATCCCCAATTCTATGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGAATGTCTCTTTCTCAGGTTGTAATAATCCCCAATTCTATGTAA  100

seq1  AGTTAAACACAGTGTTTTAGAAAAATCACCAAAGTCCACTTAGCATATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAACACAGTGTTTTAGAAAAATCACCAAAGTCCACTTAGCATATTG  150

seq1  CTGAGCCCATCTGGTGCCTCTGTGATATCCCTGAGCCCGGACACACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCATCTGGTGCCTCTGTGATATCCCTGAGCCCGGACACACACTG  200

seq1  CAGAAGAGAACGGGAAACGTGTCCAGTCCTCTCTTTGTTCCCTGGCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGAACGGGAAACGTGTCCAGTCCTCTCTTTGTTCCCTGGCTTGA  250

seq1  GCTGTTTACACCAGGGCTCTATAACCCTGTGGTCACACTGTTCTATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTACACCAGGGCTCTATAACCCTGTGGTCACACTGTTCTATGCTG  300

seq1  TGGGCCTTGATAAAGCCCTCTAGACTACATGTTACTACTGGGTTTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTGATAAAGCCCTCTAGACTACATGTTACTACTGGGTTTTAAAA  350

seq1  CTTCTTTAAAAATGGAGACAGTTGTTCAGTTATATCTTACTATACTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTAAAAATGGAGACAGTTGTTCAGTTATATCTTACTATACTCAGA  400

seq1  TTTTCAAGTGATTTTTTTTTTTTACAGCCACAAAGAATGTGCTACTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGTGATTTTTTTTTTTTACAGCCACAAAGAATGTGCTACTGCAT  450

seq1  TTTGAGTTTGTGAACATTTTGAGTTTGTGTGTACATTTGAGTGTGTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTTGTGAACATTTTGAGTTTGTGTGTACATTTGAGTGTGTGCAT  500

seq1  TTTGAGTGTTTGTGAGTTTTGAGTGTGTGTATGTTTTAAGTGCTGGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGTTTGTGAGTTTTGAGTGTGTGTATGTTTTAAGTGCTGGAAGT  550

seq1  TACTTGATCATGTTTCATTTCAAAAGTAGGCATGATGTATTTTTAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATCATGTTTCATTTCAAAAGTAGGCATGATGTATTTTTAGAAAC  600

seq1  TCAAATTATAAAGACTTTTGAATTCTAGTATGATTTCATTCACATTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATAAAGACTTTTGAATTCTAGTATGATTTCATTCACATTCTTG  650

seq1  TGGGGTTTCCAGGGTGTGTTGATATCTATTCTGTATGTAAAAACTCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTCCAGGGTGTGTTGATATCTATTCTGTATGTAAAAACTCTTTG  700

seq1  AGCCAAGTTTTTCTCATTCATGAACCAGTATGAATTAGATTTTGGACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTTTTTCTCATTCATGAACCAGTATGAATTAGATTTTGGACTTT  750

seq1  CCTGTAGCTTTCTACTGAGGTCTACAAATTCATTTTCCAAAGCTGAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGCTTTCTACTGAGGTCTACAAATTCATTTTCCAAAGCTGAGTCC  800

seq1  TTAGTTACTAATCCATTGCAATAATTCAGGCCCCAGTGATCTGATCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACTAATCCATTGCAATAATTCAGGCCCCAGTGATCTGATCTTCT  850

seq1  TGCTGTGAAACTGAGAGCAGTGTTGGCATTGTGCAGTGGATGCGAATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAAACTGAGAGCAGTGTTGGCATTGTGCAGTGGATGCGAATGGT  900

seq1  ACGTCACTAAGCTGCATCTTTAGACAGTATGCAGAACCTGCTCTGCATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCACTAAGCTGCATCTTTAGACAGTATGCAGAACCTGCTCTGCATCC  950

seq1  CC-TCCACTTTACTAATGCCTTTTAGAAAAACTGCTTTATCTTTACGGTC  999
      || |||||||||||||||||||||||||||||||||||||||||   |||
seq2  CCTTCCACTTTACTAATGCCTTTTAGAAAAACTGCTTTATCTTTTACGTC  1000

seq1  CAGTGAGAAGTGAGCACTCTCC-TAGTTC-TTTCCCTT-GAGTCAAGGTG  1046
      |||||||||||||||||||||| |||||| |||||||| |||||||||||
seq2  CAGTGAGAAGTGAGCACTCTCCTTAGTTCTTTTCCCTTGGAGTCAAGGTG  1050

seq1  GCTTACAGGGAAG-CTGCCCG-ATTCAGTGCAGTGGCTATCAGGAAGGGG  1094
      ||||||||||||| ||||||| |||||||||| ||  ||||| |||||||
seq2  GCTTACAGGGAAGCCTGCCCGAATTCAGTGCA-TGCTTATCA-GAAGGGG  1098

seq1  ATCTA-GCCTT-CACAAAAACTAGCCTGCCTCCAGCTGCTCAG--AGAGG  1140
      ||||| ||||| |||||||||||||||| ||||||||||||||  |||||
seq2  ATCTATGCCTTCCACAAAAACTAGCCTG-CTCCAGCTGCTCAGAAAGAGG  1147

seq1  AGTGAGGGTACGAGCCTTACCAT-CAGCTT  1169
      |||   | |  ||| |||||||| ||||||
seq2  AGTAGTGATCAGAG-CTTACCATACAGCTT  1176


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