BAC Information

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BAC

Clone NameB6Ng01-258B19
Chromosome13 (Build37)
Map Location 76,010,930 - 76,012,034
singlet/doubletsinglet
Overlap geneRhobtb3
Upstream genePcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx
Downstream geneLOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258B19.bB6Ng01-258B19.g
ACCGA063635GA063636
length1,1021,179
definitionB6Ng01-258B19.b B6Ng01-258B19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaaacagccaggactacagaataagaccctgcctcaaaccaac
aaacaaaaaacaacaaaggaaggaaggaaggaaagaaagaaggacggaag
ggagggagggagtctgaactccagaaaaagtgatagcagaaaaaaagtta
cttctggtggcagtaaaaacaggcactaaacagtcactctgtacaacata
accaaacacttagctaaattaaaccaactgtgagcaaaagaaatccacca
acagcaagaatcagcttttcctgtgtgttgctgtatgtcttcttaaaact
ctagtgtatgcaaatcaaagtgggggatgagctacttagccgggttggaa
ggcttgccatggcaggagatccttttccatcctagcttcctgatttctta
acaactttacacacaaaaaattctcaccagaaatttgggagacagaggca
ggaaggtaaggaattcaaaaccagccctggctatacagacaagtgtgagg
cagcccaagaaacacacaccctgttcctaagaagagaaaactagaaatga
aaacgagtgctgtgaagagaagcaattagtaggtttccagtaataactgg
ggtgcttctaaagctgaaaacgaacagtcccacccatgagggcacggcag
gaacttccaaatcccaagcagatggccagtgcaccaggtggaaggccgcc
gagaggaggatgccctttgtgggcagccactgcctggcaaccaggaaggt
agacccagactttcctctggagattttaaatggtagtgctacataaaaaa
gttgtctaaatggtgacttctctgatgccatagttcataattacagaatt
agcatatttcataattctgttatccagaggaccatttcctctgctaagaa
gaatcataccataggtactaaagatgtgacctttcagatttctttcagtt
cccacccaagtaaaggtactgacccctgccacagcatccagttcttccac
agctcctgagaggatgtcctgcactctgatttgcacattttatagcattc
cataagccaatagctattgacacaatacagaatgatgtaatgtactgtct
tt
gaattctcagtttagttctatatcccatttttttgattgggttgtttggt
tttttggtgattaacttctcttagccctctacggatgtggggttagggaa
gattttttttttcccaatctgtaggttgctgatttgtctttttgactatg
tcctttgccttacagtagctttccagtttcatgaggtcccatttatcaat
tcttgatcttagagcatgagccattagttctgtttaggaaatttctctct
gtgctactgagttcaaggcactttctcttctattagattcagtgtatctg
gttttatgttgaggtccttgatccacttggacttgaactttgtacaaggt
gacaaatatgggtctattttcattcttctacatacagacaacaagttaga
gaaacaccatttattaaagatgctttcttttttccattgtatatttttgg
tgtctttgtcaaagatcaagtgactgtaagtgtgtggttttatttccggg
tcttcaattctattccattgatcaacatgcctgtctctgtcagcacctaa
agaaatgttcaaagtccttagtgatcagagaaatgcaaatcaaaatgaac
ctgcgatttcaccttacaccaatcagaatggctaagatcaaaacctcagg
tgacaggacatgttggagagaatatggagaaaagggaacactcctccatt
gctggtgagatggcaaactggtacaaccaccctgaaaatcaacctggagg
ttcctcagaaaattggaaagaaatctaccttaagacccaggtataccact
cttgggaatatacccaaaagatgtcccaccatgccacaggggcatgtgtt
ccactgtgatcatagtggtctaatttgtgataaccagaagctggaaacaa
cctagatgtcccacgacagaagaatggattcagaaaatgtggtttcattt
attttacacaatgggatgtacttagctattaagatgagacatcccatttt
tgcagcaaatgatagactagaaaatatcatctgagtgaggtactcagacc
aaagacatgcatgattacaggataaaaattggagagggagctgaagaagg
atgttccagcgaccagatcaatggaatcagcttcaaggggaggttccagc
ctgtcaatttattacctgagagctatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76010930_76012034
seq2: B6Ng01-258B19.b_46_1147

seq1  GAATTCCAAAACAGCCAGGACTACAGAATAAGACCCTGCCTCAAACCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACAGCCAGGACTACAGAATAAGACCCTGCCTCAAACCAAC  50

seq1  AAACAAAAAACAACAAAGGAAGGAAGGAAGGAAAGAAAGAAGGACGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACAACAAAGGAAGGAAGGAAGGAAAGAAAGAAGGACGGAAG  100

seq1  GGAGGGAGGGAGTCTGAACTCCAGAAAAAGTGATAGCAGAAAAAAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGGAGTCTGAACTCCAGAAAAAGTGATAGCAGAAAAAAAGTTA  150

seq1  CTTCTGGTGGCAGTAAAAACAGGCACTAAACAGTCACTCTGTACAACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTGGCAGTAAAAACAGGCACTAAACAGTCACTCTGTACAACATA  200

seq1  ACCAAACACTTAGCTAAATTAAACCAACTGTGAGCAAAAGAAATCCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACACTTAGCTAAATTAAACCAACTGTGAGCAAAAGAAATCCACCA  250

seq1  ACAGCAAGAATCAGCTTTTCCTGTGTGTTGCTGTATGTCTTCTTAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGAATCAGCTTTTCCTGTGTGTTGCTGTATGTCTTCTTAAAACT  300

seq1  CTAGTGTATGCAAATCAAAGTGGGGGATGAGCTACTTAGCCGGGTTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTATGCAAATCAAAGTGGGGGATGAGCTACTTAGCCGGGTTGGAA  350

seq1  GGCTTGCCATGGCAGGAGATCCTTTTCCATCCTAGCTTCCTGATTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCCATGGCAGGAGATCCTTTTCCATCCTAGCTTCCTGATTTCTTA  400

seq1  ACAACTTTACACACAAAAAATTCTCACCAGAAATTTGGGAGACAGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTACACACAAAAAATTCTCACCAGAAATTTGGGAGACAGAGGCA  450

seq1  GGAAGGTAAGGAATTCAAAACCAGCCCTGGCTATACAGACAAGTGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAAGGAATTCAAAACCAGCCCTGGCTATACAGACAAGTGTGAGG  500

seq1  CAGCCCAAGAAACACACACCCTGTTCCTAAGAAGAGAAAACTAGAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAGAAACACACACCCTGTTCCTAAGAAGAGAAAACTAGAAATGA  550

seq1  AAACGAGTGCTGTGAAGAGAAGCAATTAGTAGGTTTCCAGTAATAACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGTGCTGTGAAGAGAAGCAATTAGTAGGTTTCCAGTAATAACTGG  600

seq1  GGTGCTTCTAAAGCTGAAAACGAACAGTCCCACCCATGAGGGCACGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCTAAAGCTGAAAACGAACAGTCCCACCCATGAGGGCACGGCAG  650

seq1  GAACTTCCAAATCCCAAGCAGATGGCCAGTGCACCAGGTGGAAGGCCGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCCAAATCCCAAGCAGATGGCCAGTGCACCAGGTGGAAGGCCGCC  700

seq1  GAGAGGAGGATGCCCTTTGTGGGCAGCCACTGCCTGGCAACCAGGAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGATGCCCTTTGTGGGCAGCCACTGCCTGGCAACCAGGAAGGT  750

seq1  AGACCCAGACTTTCCTCTGGAGATTTTAAATGGTAGTGCTACATAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGACTTTCCTCTGGAGATTTTAAATGGTAGTGCTACATAAAAAA  800

seq1  GTTGTCTAAATGGTGACTTCTCTGATGCCATAGTTCATAATTACAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAAATGGTGACTTCTCTGATGCCATAGTTCATAATTACAGAATT  850

seq1  AGCATATTTCATAATTCTGTTATCCAGAGGACCATTTCCTCTGCTAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTTCATAATTCTGTTATCCAGAGGACCATTTCCTCTGCTAAGAA  900

seq1  GAATCATACCATAGGTACTAAAGATGTGACCTTTCAGATTTCTTTCAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATACCATAGGTACTAAAGATGTGACCTTTCAGATTTCTTTCAGTT  950

seq1  CCCACCCAAGT-AAGGTACTGACCCCTGCCACAGCATCCAGGTCTTCCAC  999
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  CCCACCCAAGTAAAGGTACTGACCCCTGCCACAGCATCCAGTTCTTCCAC  1000

seq1  AGCTCCTGAGAGGATGTCCTGCACCTCTGATTTGCACATTTTATAGGCAA  1049
      ||||||||||||||||||||||| ||||||||||||||||||||||   |
seq2  AGCTCCTGAGAGGATGTCCTGCA-CTCTGATTTGCACATTTTATAG--CA  1047

seq1  TTCCATAAG-CAATAGCTATTGACACAAATAACAGAAATGATGT-ATGTA  1097
      ||||||||| ||||||||||||||||||   |||| |||||||| |||||
seq2  TTCCATAAGCCAATAGCTATTGACACAA--TACAG-AATGATGTAATGTA  1094

seq1  CTGTCTTT  1105
      ||||||||
seq2  CTGTCTTT  1102