BAC Information

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BAC

Clone NameB6Ng01-260B22
Chromosome13 (Build37)
Map Location 25,428,652 - 25,429,794
singlet/doubletsinglet
Overlap genenone
Upstream geneCmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
Downstream geneTpi-rs8, LOC214973, LOC666221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260B22.bB6Ng01-260B22.g
ACCGA065122GA065123
length1,165334
definitionB6Ng01-260B22.b B6Ng01-260B22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccctcaactcccctctgactcttacagtcagttgaggcaactc
taacgagctgataaagccagtcacctgaagatcagtggattggcactgtc
cacaatgtacatggtaagtgtgcagtccacacagacaggtgtcactcacc
tccaagcttaaccaaagtattaatgcttagtgttcctggagtgggaacct
caggcttgctaggtgaaggaggtagatgatgactcacttgtggattcaaa
aatgttgaagatttagatgaccttgtctgtggatagtttccaagctgcca
gctcatatttaaatattgtgaggttacagtgactactttccatggggctc
tttctactgcctggaaacaagggaaaataatccaaggggctctggccagg
acaacctggatctttatgtcccttcagaaccgtagagggcataactgtga
taacgatcttcagtcagggttagcccaacaggtaataagaccttagcagc
tgttgttccttatgccttttacatagaaacacagcacttatgtataagaa
cataaagtgttcaattcaaaatactatgctgagcgtacatttaaaataat
caagataatatttgtaagttctaaaaccagggatagtccttaaggttctt
caagaagggtaccaaggacagagcttggtcctgtctgcctctcgagtgag
cctgtcattctgaaagccgtgcatacacaggttgacccctaacacttatt
gacaggctaccatagttcttcccctggagaacatcagagcagagtgtctc
aaacatcatcctctaaggaaattataagagcagatagctcagtgcggcag
tgtaattaacactattaaatcactgttaggaaaattagcatgccttgagt
gtacaggtccacctccctctaaaggatttgcaaagggaaaaattctcagc
ctcacactgccttactcatcctcaatagcagaacagaacaatctgcttgg
ctctaataccttctcccttgaacaaagcatgcaacatttaattcagtatc
tgcagcctaagcccccaagggtccttttcttctctcccctccctaaggaa
tgttcaaaagaacaaaccccaatctgtaactcgtgagactgttaggtaaa
atgaaccctaatgct
ctgctcaagttggggactgtcataaagtgatgcctgatgggaagaaacag
aggggaagatggttggtacccattgagtgggagcaggatgaggcaaggct
gcggcaggcctttgctacagagctgggggtgcagagggggactgggttag
gaggagtagggagaggggtgaagatttgcagttatactgatgtttccctg
ccctgtgagactggagtgtttccaggggatgcctgctggtattggaggct
gggataatggggtgattgtgggcaaggaaggttgtcggataacctccaaa
tccactgcagacatgatagaggaacatgaggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25428652_25429794
seq2: B6Ng01-260B22.b_44_1208 (reverse)

seq1  AGCA-TAGGG-TCATTTTAACTACCAG-CTCACGAG-TACAGA-TGGGGT  45
      |||| ||||| |||||||| ||| ||| |||||||| |||||| ||||||
seq2  AGCATTAGGGTTCATTTTACCTAACAGTCTCACGAGTTACAGATTGGGGT  50

seq1  T--GTCTTTGGAACAT--CCTAGGGA-GGGAGAGAAG-AAAGGACCCTTG  89
      |   ||||| ||||||  | |||||| |||||||||| ||||||||||||
seq2  TTGTTCTTTTGAACATTCCTTAGGGAGGGGAGAGAAGAAAAGGACCCTTG  100

seq1  GGGGCTTA-GCTGCAGATACTGAATTAAATG-TGCATGCTTTGT--CAGG  135
      |||||||| |||||||||||||||||||||| ||||||||||||   |||
seq2  GGGGCTTAGGCTGCAGATACTGAATTAAATGTTGCATGCTTTGTTCAAGG  150

seq1  GAG-AGGTA-TAGAGCCAAGCAGATTG-TCTG-TCTGCTA-TGAGGATGA  180
      ||| ||||| ||||||||||||||||| |||| ||||||| |||||||||
seq2  GAGAAGGTATTAGAGCCAAGCAGATTGTTCTGTTCTGCTATTGAGGATGA  200

seq1  GTAAGGCAGTGTGAGGCTGAGAA-TTTTCCCTTTGCAAATCC-TTAGAGG  228
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  GTAAGGCAGTGTGAGGCTGAGAATTTTTCCCTTTGCAAATCCTTTAGAGG  250

seq1  GAGGT-GACCTGTACACTCAAGGCATGCTAATTTTCCTAACAGTGATTTA  277
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGACCTGTACACTCAAGGCATGCTAATTTTCCTAACAGTGATTTA  300

seq1  ATAGTGTTAATTACACTGCCGCACCTGAGCTATCTGCTCTTATAATTTCC  327
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATAGTGTTAATTACACTGCCGCA-CTGAGCTATCTGCTCTTATAATTTCC  349

seq1  TTAGAGGATGATGTTTGAGACACTCTGCTCTGATGTTCTCCAGGGGAAGA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGATGATGTTTGAGACACTCTGCTCTGATGTTCTCCAGGGGAAGA  399

seq1  ACTATGGTAGCCTGTCAATAAGTGTTAGGGGTCAACCTGTGTATGCACGG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGTAGCCTGTCAATAAGTGTTAGGGGTCAACCTGTGTATGCACGG  449

seq1  CTTTCAGAATGACAGGCTCACTCGAGAGGCAGACAGGACCAAGCTCTGTC  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAATGACAGGCTCACTCGAGAGGCAGACAGGACCAAGCTCTGTC  499

seq1  CTTGGTACCCTTCTTGAAGAACCTTAAGGACTATCCCTGGTTTTAGAACT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTACCCTTCTTGAAGAACCTTAAGGACTATCCCTGGTTTTAGAACT  549

seq1  TACAAATATTATCTTGATTATTTTAAATGTACGCTCAGCATAGTATTTTG  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATTATCTTGATTATTTTAAATGTACGCTCAGCATAGTATTTTG  599

seq1  AATTGAACACTTTATGTTCTTATACATAAGTGCTGTGTTTCTATGTAAAA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACACTTTATGTTCTTATACATAAGTGCTGTGTTTCTATGTAAAA  649

seq1  GGCATAAGGAACAACAGCTGCTAAGGTCTTATTACCTGTTGGGCTAACCC  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAGGAACAACAGCTGCTAAGGTCTTATTACCTGTTGGGCTAACCC  699

seq1  TGACTGAAGATCGTTATCACAGTTATGCCCTCTACGGTTCTGAAGGGACA  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAGATCGTTATCACAGTTATGCCCTCTACGGTTCTGAAGGGACA  749

seq1  TAAAGATCCAGGTTGTCCTGGCCAGAGCCCCTTGGATTATTTTCCCTTGT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCCAGGTTGTCCTGGCCAGAGCCCCTTGGATTATTTTCCCTTGT  799

seq1  TTCCAGGCAGTAGAAAGAGCCCCATGGAAAGTAGTCACTGTAACCTCACA  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCAGTAGAAAGAGCCCCATGGAAAGTAGTCACTGTAACCTCACA  849

seq1  ATATTTAAATATGAGCTGGCAGCTTGGAAACTATCCACAGACAAGGTCAT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAATATGAGCTGGCAGCTTGGAAACTATCCACAGACAAGGTCAT  899

seq1  CTAAATCTTCAACATTTTTGAATCCACAAGTGAGTCATCATCTACCTCCT  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTTCAACATTTTTGAATCCACAAGTGAGTCATCATCTACCTCCT  949

seq1  TCACCTAGCAAGCCTGAGGTTCCCACTCCAGGAACACTAAGCATTAATAC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAGCAAGCCTGAGGTTCCCACTCCAGGAACACTAAGCATTAATAC  999

seq1  TTTGGTTAAGCTTGGAGGTGAGTGACACCTGTCTGTGTGGACTGCACACT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAAGCTTGGAGGTGAGTGACACCTGTCTGTGTGGACTGCACACT  1049

seq1  TACCATGTACATTGTGGACAGTGCCAATCCACTGATCTTCAGGTGACTGG  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTACATTGTGGACAGTGCCAATCCACTGATCTTCAGGTGACTGG  1099

seq1  CTTTATCAGCTCGTTAGAGTTGCCTCAACTGACTGTAAGAGTCAGAGGGG  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAGCTCGTTAGAGTTGCCTCAACTGACTGTAAGAGTCAGAGGGG  1149

seq1  AGTTGAGGGAGAATTC  1143
      ||||||||||||||||
seq2  AGTTGAGGGAGAATTC  1165