BAC Information

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BAC

Clone NameB6Ng01-260I24
Chromosome13 (Build37)
Map Location 39,852,069 - 39,976,892
singlet/doubletdoublet
Overlap geneLOC382747, A230103O09Rik
Upstream geneSlc35b3, EG666867, LOC100041779
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260I24.bB6Ng01-260I24.g
ACCGA065452GA065453
length9161,136
definitionB6Ng01-260I24.b B6Ng01-260I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,852,069 - 39,852,984)(39,975,755 - 39,976,892)
sequence
gaattctgggactatcaattggggcttcctgaatcctaggcaagcattca
tccaactgagctgcatcccaagactgacttttaaaaagtcaaaaatctca
tgaaaaaaatattacctgtggattctgagatcaaacttgaatgctagtac
tttcttttaagtgtgtctgttcttcctctaaatcaacacatgtgtacaat
agaaacagtcctaagtacagggagaagattgccatggggggagaagtggc
aacaaagtgatttgacattagcttggctcaatgttaccagaccctttaaa
atgagaaagacattaagctagttagaaagacgtatattccttcctctaaa
atgaaccccttccttctgcaagatgacaacagagagccaggttgaaagga
cacatttctatattttcaaatgcagtctgtaatatgattaggcttaggat
cgcattgtatatatttaggagaatccttaagcacaagcccatgaactata
aacaaatgcttgttagcatttagaattggacctggagagggcagagttgg
ctgtggggagggacaatttggacaaggaaataggagcagagctgtggctg
gtgataccattgaagatgagaaacactatcattccaagccaagacctact
ggaagcagatcccacccatggtggacctcattcttgcgaggtataccaca
tctccaacatcggaactcaacagctcccggaagtttctgcagagattttt
aatggaagaactgaacaagatggggacttcttgtgctctggactgtgggc
actgccatgggaaggatcaccaagtgactgcttctgctgccattcagagt
ggtggacatggtggacatgacagaggactatctggccaaagccaatacct
acctgggggggggggg

gaattctttacaaacaagagattctaatatttcaaggtccagtggttgtt
ctgagaatgaggccagctttcttcttttatcttgtcctgtggctcttcat
tagccaggctccttctttgaaagtgaataaaacacggacatgcaaaagtt
aagattcacatcctcgcagttttgcaactgacagtatttagttcttgatt
cagggcggggaagaggaagccattaaagcagaacctgcccatcagaccag
tttggtttaatccaaattcggccactctcaaggccagttccaccttgcgt
aacactgaaaggttacgttttgcttttcgttggttggtttttcagctgta
gtcaatataagtgaccaaggccccaaaacaaaacacaacaaaacaacaac
aacaacaacaacaacaacaacaacaaacagaaagaaatagatgaaatgac
caaacaaaacaacaaacaaacaacaaaacaaaacaaaacaaaacggagaa
aaaaatcatttaattgtgatggattttattgtataagcaaaactttcagg
aattctaaatccttgtagtattaacagatgatttggagtatagattaatg
tctgtgtcccagtttgggcttaggcataagggaaatagtggattccaata
atttcaattataatattccttagagaataaagaaatatggtagctaccat
ctctctgtcttttagtaaaaacccatttacacacaaatagtgtggctgcc
tttcctaaaacctcacctaccctctttaaaatgaggaaataaaataagta
ggaaaaaatatttctaattcatagctcaattgaaactgggagaaaaaata
tctcacagtcaaagttagattttcttgaaaagattttaataaaatttttg
gaataagtttaacaaaactttgtttgcaaaaataaagatccccattgagt
ctttggtataatcagaagtgaagagaacagaaaagtcacagtgacagaaa
aatcagagcaaaaaaaggaaggggaggccgactagttcaagcgctaaact
cttgttttccttgctaacagcagctaatcagtgtaataagaagccaaagg
tagccagtctaataacggtcactggttaccagttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_39852069_39852984
seq2: B6Ng01-260I24.b_49_964

seq1  GAATTCTGGGACTATCAATTGGGGCTTCCTGAATCCTAGGCAAGCATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGACTATCAATTGGGGCTTCCTGAATCCTAGGCAAGCATTCA  50

seq1  TCCAACTGAGCTGCATCCCAAGACTGACTTTTAAAAAGTCAAAAATCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGAGCTGCATCCCAAGACTGACTTTTAAAAAGTCAAAAATCTCA  100

seq1  TGAAAAAAATATTACCTGTGGATTCTGAGATCAAACTTGAATGCTAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAATATTACCTGTGGATTCTGAGATCAAACTTGAATGCTAGTAC  150

seq1  TTTCTTTTAAGTGTGTCTGTTCTTCCTCTAAATCAACACATGTGTACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTAAGTGTGTCTGTTCTTCCTCTAAATCAACACATGTGTACAAT  200

seq1  AGAAACAGTCCTAAGTACAGGGAGAAGATTGCCATGGGGGGAGAAGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGTCCTAAGTACAGGGAGAAGATTGCCATGGGGGGAGAAGTGGC  250

seq1  AACAAAGTGATTTGACATTAGCTTGGCTCAATGTTACCAGACCCTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTGATTTGACATTAGCTTGGCTCAATGTTACCAGACCCTTTAAA  300

seq1  ATGAGAAAGACATTAAGCTAGTTAGAAAGACGTATATTCCTTCCTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAGACATTAAGCTAGTTAGAAAGACGTATATTCCTTCCTCTAAA  350

seq1  ATGAACCCCTTCCTTCTGCAAGATGACAACAGAGAGCCAGGTTGAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCCCTTCCTTCTGCAAGATGACAACAGAGAGCCAGGTTGAAAGGA  400

seq1  CACATTTCTATATTTTCAAATGCAGTCTGTAATATGATTAGGCTTAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCTATATTTTCAAATGCAGTCTGTAATATGATTAGGCTTAGGAT  450

seq1  CGCATTGTATATATTTAGGAGAATCCTTAAGCACAAGCCCATGAACTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTGTATATATTTAGGAGAATCCTTAAGCACAAGCCCATGAACTATA  500

seq1  AACAAATGCTTGTTAGCATTTAGAATTGGACCTGGAGAGGGCAGAGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGCTTGTTAGCATTTAGAATTGGACCTGGAGAGGGCAGAGTTGG  550

seq1  CTGTGGGGAGGGACAATTTGGACAAGGAAATAGGAGCAGAGCTGTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGAGGGACAATTTGGACAAGGAAATAGGAGCAGAGCTGTGGCTG  600

seq1  GTGATACCATTGAAGATGAGAAACACTATCATTCCAAGCCAAGACCTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACCATTGAAGATGAGAAACACTATCATTCCAAGCCAAGACCTACT  650

seq1  GGAAGCAGATCCCACCCATGGTGGACCTCATTCTTGCGAGGTATACCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGATCCCACCCATGGTGGACCTCATTCTTGCGAGGTATACCACA  700

seq1  TCTCCAACATCGGAACTCAACAGCTCCCGGAAGTTTCTGCAGAGATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAACATCGGAACTCAACAGCTCCCGGAAGTTTCTGCAGAGATTTTT  750

seq1  AATGGAAGAACTGAACAAGATGGGGACTTCTTGTGCTCTGGACTGTGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGAACTGAACAAGATGGGGACTTCTTGTGCTCTGGACTGTGGGC  800

seq1  ACTGCCATGGGAAGGATCACCAAGTGACTGCTTCTGCTGCCATTCAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATGGGAAGGATCACCAAGTGACTGCTTCTGCTGCCATTCAGAGT  850

seq1  GGTGGACATGGTGGACATGACAGAGGACTATCTGGCCAAAGCCAATACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACATGGTGGACATGACAGAGGACTATCTGGCCAAAGCCAATACCT  900

seq1  ACCTGGGGGGGGGGGG  916
      ||||||||||||||||
seq2  ACCTGGGGGGGGGGGG  916


seq1: chr13_39975755_39976892
seq2: B6Ng01-260I24.g_64_1199 (reverse)

seq1  ACAACTGGTGACAAGTGCTGTTTATTAGACT-GCTA-CTTTGCCTCTTAA  48
      ||||||||| || ||||    |||||||||| |||| ||||| ||  | |
seq2  ACAACTGGTAACCAGTGACCGTTATTAGACTGGCTACCTTTGGCTTCTTA  50

seq1  TTACAACTGATTAGCCTGCTGTTAGCAAAGGGAAACAAGAG-TTAGCGCT  97
      |||| ||||||||| ||||||||||| |||| ||||||||| ||||||||
seq2  TTAC-ACTGATTAG-CTGCTGTTAGC-AAGGAAAACAAGAGTTTAGCGCT  97

seq1  TGAACCTAGTCGGCCTCCCCTTCCTTTTTTTGCTCTGA-TTTTCTGTCCA  146
      |||| ||||||||||||||||||||||||||||||||| |||||||| ||
seq2  TGAA-CTAGTCGGCCTCCCCTTCCTTTTTTTGCTCTGATTTTTCTGT-CA  145

seq1  CTGTGACTTTTCTGTTCTCTTCACTTCTGATTATTACCAAAGACTCAATG  196
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGTGACTTTTCTGTTCTCTTCACTTCTGATTA-TACCAAAGACTCAATG  194

seq1  GGGATCTTTA-TTTTGCAAACAAAGTTTTGTTAAACTTTATTCCAAAAAT  245
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  GGGATCTTTATTTTTGCAAACAAAGTTTTGTTAAAC-TTATTCCAAAAAT  243

seq1  TTTATTAAAATCTTTTCAAGAAAATCTAACTTTGACTGTGAGATATTTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAAATCTTTTCAAGAAAATCTAACTTTGACTGTGAGATATTTTT  293

seq1  TCTCCCAGTTTCAATTGAGCTATGAATTAGAAATATTTTTTCCTACTTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGTTTCAATTGAGCTATGAATTAGAAATATTTTTTCCTACTTAT  343

seq1  TTTATTTCCTCATTTTAAAGAGGGTAGGTGAGGTTTTAGGAAAGGCAGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCTCATTTTAAAGAGGGTAGGTGAGGTTTTAGGAAAGGCAGCC  393

seq1  ACACTATTTGTGTGTAAATGGGTTTTTACTAAAAGACAGAGAGATGGTAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTTGTGTGTAAATGGGTTTTTACTAAAAGACAGAGAGATGGTAG  443

seq1  CTACCATATTTCTTTATTCTCTAAGGAATATTATAATTGAAATTATTGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATATTTCTTTATTCTCTAAGGAATATTATAATTGAAATTATTGGA  493

seq1  ATCCACTATTTCCCTTATGCCTAAGCCCAAACTGGGACACAGACATTAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTATTTCCCTTATGCCTAAGCCCAAACTGGGACACAGACATTAAT  543

seq1  CTATACTCCAAATCATCTGTTAATACTACAAGGATTTAGAATTCCTGAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTCCAAATCATCTGTTAATACTACAAGGATTTAGAATTCCTGAAA  593

seq1  GTTTTGCTTATACAATAAAATCCATCACAATTAAATGATTTTTTTCTCCG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTTATACAATAAAATCCATCACAATTAAATGATTTTTTTCTCCG  643

seq1  TTTTGTTTTGTTTTGTTTTGTTGTTTGTTTGTTGTTTTGTTTGGTCATTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTGTTGTTTGTTTGTTGTTTTGTTTGGTCATTT  693

seq1  CATCTATTTCTTTCTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTTCTTTCTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG  743

seq1  TTTTGTTGTGTTTTGTTTTGGGGCCTTGGTCACTTATATTGACTACAGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTGTTTTGTTTTGGGGCCTTGGTCACTTATATTGACTACAGCT  793

seq1  GAAAAACCAACCAACGAAAAGCAAAACGTAACCTTTCAGTGTTACGCAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCAACCAACGAAAAGCAAAACGTAACCTTTCAGTGTTACGCAAG  843

seq1  GTGGAACTGGCCTTGAGAGTGGCCGAATTTGGATTAAACCAAACTGGTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACTGGCCTTGAGAGTGGCCGAATTTGGATTAAACCAAACTGGTCT  893

seq1  GATGGGCAGGTTCTGCTTTAATGGCTTCCTCTTCCCCGCCCTGAATCAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCAGGTTCTGCTTTAATGGCTTCCTCTTCCCCGCCCTGAATCAAG  943

seq1  AACTAAATACTGTCAGTTGCAAAACTGCGAGGATGTGAATCTTAACTTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATACTGTCAGTTGCAAAACTGCGAGGATGTGAATCTTAACTTTT  993

seq1  GCATGTCCGTGTTTTATTCACTTTCAAAGAAGGAGCCTGGCTAATGAAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCCGTGTTTTATTCACTTTCAAAGAAGGAGCCTGGCTAATGAAGA  1043

seq1  GCCACAGGACAAGATAAAAGAAGAAAGCTGGCCTCATTCTCAGAACAACC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGACAAGATAAAAGAAGAAAGCTGGCCTCATTCTCAGAACAACC  1093

seq1  ACTGGACCTTGAAATATTAGAATCTCTTGTTTGTAAAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACCTTGAAATATTAGAATCTCTTGTTTGTAAAGAATTC  1136


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