BAC Information

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BAC

Clone NameB6Ng01-260J13
Chromosome13 (Build37)
Map Location 45,979,376 - 46,121,850
singlet/doubletdoublet
Overlap geneAtxn1, 5033430I15Rik
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260J13.bB6Ng01-260J13.g
ACCGA065478GA065479
length1,074359
definitionB6Ng01-260J13.b B6Ng01-260J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,979,376 - 45,980,452)(46,121,475 - 46,121,850)
sequence
gaattcagggaggctcagcttatactgattccccgcctctacacgccacc
ccccccaccctgctcaagccctaagcggattccagggaggccttttggaa
gacactgagcatgctaggggtttctgaagccacagatgagaacccgatgg
taaaagcctgcttcctccttttccggatgctgagagaacttaagacttcg
gtccaaagccacctggttgtagtcctgtgatttaccacagccctggggca
aaccagtagccttcttcacctgtttgctactgagaattgggagggtgggg
gtggcataatttaatctctgacaacacagagaatgtctccttaaggagtc
tgaaattaaatctttatgaatttattatattacctgcacatctcagatga
agcatcactgtccctaaatcactcatgggtatatttgtaaagaatctttt
aatatctttatctattcctctgatagtttaagagtgacaaagatatagca
gaaaataaactagaaacatcattgaataacatttgtcttaggaaaacaaa
ataaaagaaatagtcaatgaattatacatgtctaccatgtttacaaattt
catatgtacacacacacacacacacacacacacacacacacacacacaca
cgcttcaacctctggcccccaaattgctaatttttgtgtgaaaaagattg
taagttgcattccctgttagttaatcaatgaattacacatgcctagaatg
tctacaaattacacatgcatacacacacacacacacacacacacacttca
atttctggccccaagagtgctagttttcgtgtgggaaagattgtaatttg
cattccttgttagatcaggcaaatttgtgggtatgctgtaattttggggg
gtggggtgcagggtgggactagtcctccattcgaccatgactgtcactta
tacgctgtttcactatgcatactgataatacagtcatgttacctccatgc
cattgagatctaacatcaggtttctgctcacagctcactgatcacccagc
ccccacaccccagctcagcatgct
tcctgggaatggtgtggaactcagccccaaaaagggtcccatcccaagcc
aagcatggatgaagtgctgtctcttctcatcctcactgagtcccaaagcc
ctccccaccctcagtggctcagcattggtggagatatcagatgcatctgg
gtctcagaagcactttaattacagggagacctagagagccaagtgataca
gctccatccctgcatcatcagatccaacctccaggattttcttagtgcta
aaaataggcccagcagatgctacccgcactgcctggtcacttcctcggtg
gatttcctctctccctctccctctccctctccctctccctctccctctcc
ctctccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45979376_45980452
seq2: B6Ng01-260J13.b_45_1118

seq1  GAATTCAGGGAGGCTCAGCTTATACTGATTCCCCGCCTCTACACGCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAGGCTCAGCTTATACTGATTCCCCGCCTCTACACGCCACC  50

seq1  CCCCCCACCCTGCTCAAGCCCTAAGCGGATTCCAGGGAGGCCTTTTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACCCTGCTCAAGCCCTAAGCGGATTCCAGGGAGGCCTTTTGGAA  100

seq1  GACACTGAGCATGCTAGGGGTTTCTGAAGCCACAGATGAGAACCCGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAGCATGCTAGGGGTTTCTGAAGCCACAGATGAGAACCCGATGG  150

seq1  TAAAAGCCTGCTTCCTCCTTTTCCGGATGCTGAGAGAACTTAAGACTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCCTGCTTCCTCCTTTTCCGGATGCTGAGAGAACTTAAGACTTCG  200

seq1  GTCCAAAGCCACCTGGTTGTAGTCCTGTGATTTACCACAGCCCTGGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAGCCACCTGGTTGTAGTCCTGTGATTTACCACAGCCCTGGGGCA  250

seq1  AACCAGTAGCCTTCTTCACCTGTTTGCTACTGAGAATTGGGAGGGTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTAGCCTTCTTCACCTGTTTGCTACTGAGAATTGGGAGGGTGGGG  300

seq1  GTGGCATAATTTAATCTCTGACAACACAGAGAATGTCTCCTTAAGGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATAATTTAATCTCTGACAACACAGAGAATGTCTCCTTAAGGAGTC  350

seq1  TGAAATTAAATCTTTATGAATTTATTATATTACCTGCACATCTCAGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAAATCTTTATGAATTTATTATATTACCTGCACATCTCAGATGA  400

seq1  AGCATCACTGTCCCTAAATCACTCATGGGTATATTTGTAAAGAATCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACTGTCCCTAAATCACTCATGGGTATATTTGTAAAGAATCTTTT  450

seq1  AATATCTTTATCTATTCCTCTGATAGTTTAAGAGTGACAAAGATATAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTTATCTATTCCTCTGATAGTTTAAGAGTGACAAAGATATAGCA  500

seq1  GAAAATAAACTAGAAACATCATTGAATAACATTTGTCTTAGGAAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAACTAGAAACATCATTGAATAACATTTGTCTTAGGAAAACAAA  550

seq1  ATAAAAGAAATAGTCAATGAATTATACATGTCTACCATGTTTACAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAATAGTCAATGAATTATACATGTCTACCATGTTTACAAATTT  600

seq1  CATATGTACACACACACACACACACACACACACACACACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTACACACACACACACACACACACACACACACACACACACACACA  650

seq1  CGCTTCAACCTCTGGCCCCCAAATTGCTAATTTTTGTGTGAAAAAGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCAACCTCTGGCCCCCAAATTGCTAATTTTTGTGTGAAAAAGATTG  700

seq1  TAAGTTGCATTCCCTGTTAGTTAATCAATGAATTACACATGCCTAGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGCATTCCCTGTTAGTTAATCAATGAATTACACATGCCTAGAATG  750

seq1  TCTACAAATTACACATGCATACACACACACACACACACACACACACTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAATTACACATGCATACACACACACACACACACACACACACTTCA  800

seq1  ATTTCTGGCCCCAAGAGTGCTAGTTTTCGTGTGGGAAAGATTGTAATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGCCCCAAGAGTGCTAGTTTTCGTGTGGGAAAGATTGTAATTTG  850

seq1  CATTCCTTGTTAGATCAGGCAAATTTGTGGGTATGCTGTAATTTTGGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTGTTAGATCAGGCAAATTTGTGGGTATGCTGTAATTTTGGGGG  900

seq1  GTGGGGTGCAGGGTGGGACTAGTCCTCCATTCGACCATGACTGTCACTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGCAGGGTGGGACTAGTCCTCCATTCGACCATGACTGTCACTTA  950

seq1  TACGCTGTTTCACTATGCATACTGATAATACAGTCATG-TACCTCCATGC  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACGCTGTTTCACTATGCATACTGATAATACAGTCATGTTACCTCCATGC  1000

seq1  CATTGAGGATCTAACATCAAGGTTTCTGCTCACAGCTCACTGATCACCCC  1049
      |||||| ||||||||||| ||||||||||||||||||||||||||| |||
seq2  CATTGA-GATCTAACATC-AGGTTTCTGCTCACAGCTCACTGATCA-CCC  1047

seq1  AGCCCCCACACCCCAGCCTCAGCATGCT  1077
      |||||||||||||||| |||||||||||
seq2  AGCCCCCACACCCCAG-CTCAGCATGCT  1074

seq1: chr13_46121475_46121850
seq2: B6Ng01-260J13.g_67_431 (reverse)

seq1  GAGGGAGGGGGAGGGGGCAGGGGGAGGGAGAGGGAGAGGGAGAGGGAGAG  50
                ||||| | |||| |||||||||||||||||||||||||||
seq2  ----------GAGGGAG-AGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAG  39

seq1  GGAGAGGGAGAGAGGAAATCCACCGAGGAAGTGACCAGGCAGTGCGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAGAGAGGAAATCCACCGAGGAAGTGACCAGGCAGTGCGGGTA  89

seq1  GCATCTGCTGGGCCTATTTTTAGCACTAAGAAAATCCTGGAGGTTGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCTGGGCCTATTTTTAGCACTAAGAAAATCCTGGAGGTTGGATC  139

seq1  TGATGATGCAGGGATGGAGCTGTATCACTTGGCTCTCTAGGTCTCCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGCAGGGATGGAGCTGTATCACTTGGCTCTCTAGGTCTCCCTGT  189

seq1  AATTAAAGTGCTTCTGAGACCCAGATGCATCTGATATCTCCACCAATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGTGCTTCTGAGACCCAGATGCATCTGATATCTCCACCAATGCT  239

seq1  GAGCCACTGAGGGTGGGGAGGGCTTTGGGACTCAGTGAGGATGAGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTGAGGGTGGGGAGGGCTTTGGGACTCAGTGAGGATGAGAAGAG  289

seq1  ACAGCACTTCATCCATGCTTGGCTTGGGATGGGACCCTTTTTGGGGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTTCATCCATGCTTGGCTTGGGATGGGACCCTTTTTGGGGCTGA  339

seq1  GTTCCACACCATTCCCAGGAGAATTC  376
      ||||||||||||||||||||||||||
seq2  GTTCCACACCATTCCCAGGAGAATTC  365